Stderr output

<core_client_version>7.16.11</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-25 06:53:55 (9628): vboxwrapper version 26210
2025-11-25 06:53:55 (9628): BOINC client version: 7.16.11
2025-11-25 06:53:56 (9628): Detected: VirtualBox VboxManage Interface (Version: 6.1.12)
2025-11-25 06:53:56 (9628): Successfully copied 'init_data.xml' to the shared directory.
2025-11-25 06:53:56 (9628): Create VM. (boinc_c3b4a679baf13a22, slot#2)
2025-11-25 06:53:57 (9628): Setting Memory Size for VM. (4400MB)
2025-11-25 06:53:57 (9628): Setting CPU Count for VM. (4)
2025-11-25 06:53:57 (9628): Setting Chipset Options for VM.
2025-11-25 06:53:58 (9628): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-25 06:53:58 (9628): Setting Boot Options for VM.
2025-11-25 06:53:58 (9628): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-25 06:53:59 (9628): Enabling VM Network Access.
2025-11-25 06:53:59 (9628): Disabling USB Support for VM.
2025-11-25 06:53:59 (9628): Disabling COM Port Support for VM.
2025-11-25 06:53:59 (9628): Disabling LPT Port Support for VM.
2025-11-25 06:54:00 (9628): Disabling Audio Support for VM.
2025-11-25 06:54:00 (9628): Disabling Clipboard Support for VM.
2025-11-25 06:54:00 (9628): Disabling Drag and Drop Support for VM.
2025-11-25 06:54:01 (9628): Adding storage controller(s) to VM.
2025-11-25 06:54:01 (9628): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-25 06:54:01 (9628): Adding VirtualBox Guest Additions to VM.
2025-11-25 06:54:02 (9628): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-25 06:54:02 (9628): forwarding host port 55989 to guest port 80
2025-11-25 06:54:02 (9628): Enabling remote desktop for VM.
2025-11-25 06:54:02 (9628): Required extension pack not installed, remote desktop not enabled.
2025-11-25 06:54:02 (9628): Enabling shared directory for VM.
2025-11-25 06:54:03 (9628): Starting VM using VBoxManage interface. (boinc_c3b4a679baf13a22, slot#2)
2025-11-25 06:54:07 (9628): Successfully started VM. (PID = '29860')
2025-11-25 06:54:07 (9628): Reporting VM Process ID to BOINC.
2025-11-25 06:54:07 (9628): Guest Log: BIOS: VirtualBox 6.1.12
2025-11-25 06:54:07 (9628): Guest Log: CPUID EDX: 0x178bfbff
2025-11-25 06:54:07 (9628): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-25 06:54:07 (9628): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-25 06:54:07 (9628): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-25 06:54:07 (9628): Detected: Web Application Enabled (http://localhost:55989)
2025-11-25 06:54:07 (9628): Preference change detected
2025-11-25 06:54:07 (9628): Setting CPU throttle for VM. (100%)
2025-11-25 06:54:07 (9628): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-25 06:54:09 (9628): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-25 06:54:09 (9628): Guest Log: BIOS: Booting from Hard Disk...
2025-11-25 06:54:12 (9628): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-25 06:54:12 (9628): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-25 06:54:12 (9628): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-25 06:54:12 (9628): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-25 06:54:12 (9628): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-25 06:54:12 (9628): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-25 06:54:12 (9628): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-25 06:54:12 (9628): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-25 06:54:12 (9628): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-25 06:54:12 (9628): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-25 06:54:12 (9628): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-25 06:54:12 (9628): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-25 06:54:12 (9628): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-25 06:54:12 (9628): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-25 06:54:12 (9628): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-25 06:54:12 (9628): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-25 06:54:12 (9628): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-25 06:54:12 (9628): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-25 06:54:12 (9628): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-25 06:54:12 (9628): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-25 06:54:12 (9628): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-25 06:54:12 (9628): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-25 06:54:12 (9628): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-25 06:54:12 (9628): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-25 06:54:12 (9628): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-25 06:54:12 (9628): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-25 06:54:12 (9628): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-25 06:54:12 (9628): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-25 06:54:12 (9628): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-25 06:54:12 (9628): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-25 06:54:12 (9628): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-25 06:54:12 (9628): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-25 06:54:21 (9628): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-25 06:54:21 (9628): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0000000 (size 0x400000)
2025-11-25 06:54:32 (9628): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-25 06:54:32 (9628): Guest Log: 00:00:00.000138 main     Log opened 2025-11-25T06:54:30.525841000Z
2025-11-25 06:54:32 (9628): Guest Log: 00:00:00.000223 main     OS Product: Linux
2025-11-25 06:54:32 (9628): Guest Log: 00:00:00.000274 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-25 06:54:32 (9628): Guest Log: 00:00:00.000303 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-25 06:54:32 (9628): Guest Log: 00:00:00.000331 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-25 06:54:32 (9628): Guest Log: 00:00:00.000332 main     Process ID: 1304
2025-11-25 06:54:32 (9628): Guest Log: 00:00:00.000332 main     Package type: LINUX_64BITS_GENERIC
2025-11-25 06:54:32 (9628): Guest Log: 00:00:00.001376 main     5.2.32 r132073 started. Verbose level = 0
2025-11-25 06:54:32 (9628): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-25 06:54:32 (9628): Guest Log: [INFO] Mounting shared directory
2025-11-25 06:54:32 (9628): Guest Log: [INFO] Checking for init_data.xml
2025-11-25 06:54:40 (9628): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-25 06:54:40 (9628): Guest Log: [INFO] Detected branch: prod
2025-11-25 06:54:40 (9628): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-25 06:54:40 (9628): Guest Log: Copying input files
2025-11-25 06:54:42 (9628): Guest Log: 00:00:10.011528 timesync vgsvcTimeSyncWorker: Radical guest time change: 25 211 130 403 000ns (GuestNow=1 764 078 881 659 301 000 ns GuestLast=1 764 053 670 528 898 000 ns fSetTimeLastLoop=true )
2025-11-25 06:54:47 (9628): Guest Log: Copied input files into RunAtlas.
2025-11-25 06:54:47 (9628): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-11-25 06:54:47 (9628): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-11-25 06:54:47 (9628): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-11-25 06:54:47 (9628): Guest Log: Further information can be found at the LHC@home message board.
2025-11-25 06:54:58 (9628): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-25 06:54:58 (9628): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-25 06:54:58 (9628): Guest Log: 2.6.3.0 1583 0 32188 153284 3 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1ihep-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-11-25 06:54:59 (9628): Guest Log: copied the webapp to /var/www
2025-11-25 06:54:59 (9628): Guest Log: ATHENA_PROC_NUMBER=4
2025-11-25 06:54:59 (9628): Guest Log: ATHENA_CORE_NUMBER=4
2025-11-25 06:55:00 (9628): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-25 06:55:00 (9628): Guest Log:  *** Starting ATLAS job. (PandaID=6895350632 taskID=47556137) ***
2025-11-25 08:40:54 (9628): Status Report: Elapsed Time: '6000.045298'
2025-11-25 08:40:54 (9628): Status Report: CPU Time: '17719.875000'
2025-11-25 10:27:07 (9628): Status Report: Elapsed Time: '12000.948145'
2025-11-25 10:27:07 (9628): Status Report: CPU Time: '42785.906250'
2025-11-25 12:10:45 (9628): Status Report: Elapsed Time: '18001.696043'
2025-11-25 12:10:45 (9628): Status Report: CPU Time: '67218.531250'
2025-11-25 13:54:36 (9628): Status Report: Elapsed Time: '24002.642391'
2025-11-25 13:54:36 (9628): Status Report: CPU Time: '91776.375000'
2025-11-25 15:37:44 (9628): Status Report: Elapsed Time: '30003.508120'
2025-11-25 15:37:52 (9628): Status Report: CPU Time: '116177.781250'
2025-11-25 17:20:54 (9628): Status Report: Elapsed Time: '36003.909071'
2025-11-25 17:20:54 (9628): Status Report: CPU Time: '140570.484375'
2025-11-25 19:04:08 (9628): Status Report: Elapsed Time: '42003.999296'
2025-11-25 19:04:08 (9628): Status Report: CPU Time: '164969.484375'
2025-11-25 20:47:50 (9628): Status Report: Elapsed Time: '48004.067663'
2025-11-25 20:47:50 (9628): Status Report: CPU Time: '189523.546875'
2025-11-25 22:31:20 (9628): Status Report: Elapsed Time: '54004.267555'
2025-11-25 22:31:20 (9628): Status Report: CPU Time: '213903.515625'
2025-11-26 00:15:03 (9628): Status Report: Elapsed Time: '60004.713657'
2025-11-26 00:15:03 (9628): Status Report: CPU Time: '238379.000000'
2025-11-26 01:58:42 (9628): Status Report: Elapsed Time: '66005.562771'
2025-11-26 01:58:42 (9628): Status Report: CPU Time: '262920.593750'
2025-11-26 02:59:45 (9628): Guest Log:  *** Job finished ***
2025-11-26 02:59:45 (9628): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-26 02:59:45 (9628): Guest Log: 2025-11-26 09:59:08,056 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-11-26 02:59:45 (9628): Guest Log: 2025-11-26 09:59:17,930 [wrapper] supervise_pilot (15 min periods counter: 81)
2025-11-26 02:59:45 (9628): Guest Log: 2025-11-26 09:59:37,784 | INFO     | [monitor] cgroup control has ended
2025-11-26 02:59:45 (9628): Guest Log: 2025-11-26 09:59:38,495 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140694086166336)>', '<ExcThread(monitor, started 140693498476288)>']
2025-11-26 02:59:45 (9628): Guest Log: 2025-11-26 09:59:39,415 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-26 02:59:45 (9628): Guest Log: 2025-11-26 09:59:39,416 | INFO     | [monitor] control thread has ended
2025-11-26 02:59:45 (9628): Guest Log: 2025-11-26 09:59:43,500 | INFO     | all workflow threads have been joined
2025-11-26 02:59:45 (9628): Guest Log: 2025-11-26 09:59:43,501 | INFO     | end of generic workflow (traces error code: 0)
2025-11-26 02:59:45 (9628): Guest Log: 2025-11-26 09:59:43,501 | INFO     | traces error code: 0
2025-11-26 02:59:45 (9628): Guest Log: 2025-11-26 09:59:43,502 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-26 02:59:45 (9628): Guest Log: 2025-11-26 09:59:43,609 [wrapper] ==== pilot stdout END ====
2025-11-26 02:59:45 (9628): Guest Log: 2025-11-26 09:59:43,615 [wrapper] ==== wrapper stdout RESUME ====
2025-11-26 02:59:45 (9628): Guest Log: 2025-11-26 09:59:43,621 [wrapper] pilotpid: 6019
2025-11-26 02:59:45 (9628): Guest Log: 2025-11-26 09:59:43,625 [wrapper] Pilot exit status: 0
2025-11-26 02:59:45 (9628): Guest Log: 2025-11-26 09:59:43,646 [wrapper] pandaids: 6895350632
2025-11-26 02:59:45 (9628): Guest Log: 2025-11-26 09:59:43,680 [wrapper] cleanup supervisor_pilot 11296 6020
2025-11-26 02:59:45 (9628): Guest Log: 2025-11-26 09:59:43,688 [wrapper] Test setup, not cleaning
2025-11-26 02:59:45 (9628): Guest Log: 2025-11-26 09:59:43,696 [wrapper] apfmon messages muted
2025-11-26 02:59:45 (9628): Guest Log: 2025-11-26 09:59:43,703 [wrapper] ==== wrapper stdout END ====
2025-11-26 02:59:45 (9628): Guest Log: 2025-11-26 09:59:43,709 [wrapper] ==== wrapper stderr END ====
2025-11-26 02:59:45 (9628): Guest Log:  *** Error codes and diagnostics ***
2025-11-26 02:59:45 (9628): Guest Log:     "exeErrorCode": 0,
2025-11-26 02:59:45 (9628): Guest Log:     "exeErrorDiag": "",
2025-11-26 02:59:45 (9628): Guest Log:     "pilotErrorCode": 0,
2025-11-26 02:59:45 (9628): Guest Log:     "pilotErrorDiag": "",
2025-11-26 02:59:45 (9628): Guest Log:  *** Listing of results directory ***
2025-11-26 02:59:45 (9628): Guest Log: total 932692
2025-11-26 02:59:45 (9628): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 22 21:27 pilot3.tar.gz
2025-11-26 02:59:45 (9628): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 22 21:46 runpilot2-wrapper.sh
2025-11-26 02:59:45 (9628): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 22 21:46 queuedata.json
2025-11-26 02:59:45 (9628): Guest Log: -rwxr-xr-x. 1 atlas atlas     12101 Nov 25 13:54 init_data.xml
2025-11-26 02:59:45 (9628): Guest Log: -rwxr-xr-x. 1 atlas atlas    590097 Nov 25 13:54 input.tar.gz
2025-11-26 02:59:45 (9628): Guest Log: -rwxr-xr-x. 1 atlas atlas     15847 Nov 25 13:54 start_atlas.sh
2025-11-26 02:59:45 (9628): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Nov 25 13:54 EVNT.47483658._000518.pool.root.1 -> /data/./ATLAS.root_0
2025-11-26 02:59:45 (9628): Guest Log: -rw-r--r--. 1 atlas atlas      2784 Nov 25 13:55 pandaJob.out
2025-11-26 02:59:45 (9628): Guest Log: -rw-------. 1 atlas atlas    991909 Nov 25 13:59 agis_schedconf.cvmfs.json
2025-11-26 02:59:45 (9628): Guest Log: drwx------. 5 atlas atlas      4096 Nov 25 14:00 pilot3
2025-11-26 02:59:45 (9628): Guest Log: -rw-------. 1 atlas atlas 928534204 Nov 26 09:57 HITS.47556137._005137.pool.root.1
2025-11-26 02:59:45 (9628): Guest Log: -rw-------. 1 atlas atlas      1039 Nov 26 09:58 memory_monitor_summary.json
2025-11-26 02:59:45 (9628): Guest Log: -rw-------. 1 atlas atlas   1516240 Nov 26 09:58 agis_ddmendpoints.agis.ALL.json
2025-11-26 02:59:45 (9628): Guest Log: -rw-------. 1 atlas atlas   1842805 Nov 26 09:58 log.47556137._005137.job.log.tgz.1
2025-11-26 02:59:45 (9628): Guest Log: -rw-------. 1 atlas atlas      8657 Nov 26 09:58 heartbeat.json
2025-11-26 02:59:45 (9628): Guest Log: -rw-------. 1 atlas atlas        95 Nov 26 09:59 pilot_heartbeat.json
2025-11-26 02:59:45 (9628): Guest Log: -rw-------. 1 atlas atlas      4805 Nov 26 09:59 pilotlog.txt
2025-11-26 02:59:45 (9628): Guest Log: -rw-------. 1 atlas atlas   9506016 Nov 26 09:59 log.47556137._005137.job.log.1
2025-11-26 02:59:45 (9628): Guest Log: -rw-------. 1 atlas atlas       353 Nov 26 09:59 output.list
2025-11-26 02:59:45 (9628): Guest Log: -rw-r--r--. 1 atlas atlas       620 Nov 26 09:59 runtime_log
2025-11-26 02:59:45 (9628): Guest Log: -rw-------. 1 atlas atlas  11366400 Nov 26 09:59 result.tar.gz
2025-11-26 02:59:45 (9628): Guest Log: -rw-r--r--. 1 atlas atlas      8789 Nov 26 09:59 runtime_log.err
2025-11-26 02:59:45 (9628): Guest Log: -rw-------. 1 atlas atlas       677 Nov 26 09:59 qV5MDmAcAh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmQJIKDm6JRHqn.diag
2025-11-26 02:59:45 (9628): Guest Log: Looking for outputfile HITS.47556137._005137.pool.root.1
2025-11-26 02:59:45 (9628): Guest Log: HITS file was successfully produced
2025-11-26 02:59:45 (9628): Guest Log: -rw-------. 1 atlas atlas 928534204 Nov 26 09:57 /home/atlas/RunAtlas/HITS.47556137._005137.pool.root.1
2025-11-26 02:59:50 (9628): Guest Log: Successfully finished the ATLAS job!
2025-11-26 02:59:50 (9628): Guest Log: Copying the results back to the shared directory!
2025-11-26 02:59:50 (9628): Guest Log:  *** Contents of shared directory: ***
2025-11-26 02:59:50 (9628): Guest Log: total 1319108
2025-11-26 02:59:50 (9628): Guest Log: -rwxrwxrwx. 1 root root 410243058 Nov 25 13:53 ATLAS.root_0
2025-11-26 02:59:50 (9628): Guest Log: -rwxrwxrwx. 1 root root 928534204 Nov 26 09:59 HITS.pool.root.1
2025-11-26 02:59:50 (9628): Guest Log: -rwxrwxrwx. 1 root root     12101 Nov 25 13:53 init_data.xml
2025-11-26 02:59:50 (9628): Guest Log: -rwxrwxrwx. 1 root root    590097 Nov 24 04:30 input.tar.gz
2025-11-26 02:59:50 (9628): Guest Log: -rwxrwxrwx. 1 root root  11366400 Nov 26 09:59 result.tar.gz
2025-11-26 02:59:50 (9628): Guest Log: -rwxrwxrwx. 1 root root     15847 Nov 24 04:30 start_atlas.sh
2025-11-26 02:59:50 (9628): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-26 02:59:50 (9628): VM Completion File Detected.
2025-11-26 02:59:50 (9628): Powering off VM.
2025-11-26 02:59:51 (9628): Successfully stopped VM.
2025-11-26 02:59:51 (9628): Deregistering VM. (boinc_c3b4a679baf13a22, slot#2)
2025-11-26 02:59:51 (9628): Removing network bandwidth throttle group from VM.
2025-11-26 02:59:51 (9628): Removing VM from VirtualBox.
2025-11-26 02:59:57 (9628): called boinc_finish(0)

</stderr_txt>
]]>

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