Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:00:32 (3539867): wrapper (7.7.26015): starting
00:00:32 (3539867): wrapper: running run_atlas (--nthreads 9)
[2025-11-25 00:00:32] Arguments: --nthreads 9
[2025-11-25 00:00:32] Threads: 9
[2025-11-25 00:00:32] Checking for CVMFS
[2025-11-25 00:00:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 00:00:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 00:00:34] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 00:00:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 00:00:35] 2.13.3.0 12161 28162 324156 153270 1 66 35434330 40960000 21095 16776704 0 72037133 99.541 86832593 38206 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 00:00:35] CVMFS is ok
[2025-11-25 00:00:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 00:00:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 00:00:35] Further information can be found at the LHC@home message board.
[2025-11-25 00:00:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 00:00:35] Checking for apptainer binary...
[2025-11-25 00:00:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 00:00:35] Running /usr/bin/apptainer --version
[2025-11-25 00:00:40] apptainer version 1.4.4-1.el9
[2025-11-25 00:00:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 00:00:43] c6-5-7-1.aglt2.org
[2025-11-25 00:00:43] apptainer works
[2025-11-25 00:00:43] Set ATHENA_PROC_NUMBER=9
[2025-11-25 00:00:43] Set ATHENA_CORE_NUMBER=9
[2025-11-25 00:00:44] Starting ATLAS job with PandaID=6895350755
[2025-11-25 00:00:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 09:10:06]  *** The last 200 lines of the pilot log: ***
[2025-11-26 09:10:06] 2025-11-26 14:08:58,715 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 09:10:06] 2025-11-26 14:08:58,857 | INFO     | time since job start (119231s) is within the limit (172800.0s)
[2025-11-26 09:10:06] 2025-11-26 14:09:00,866 | INFO     | time since job start (119233s) is within the limit (172800.0s)
[2025-11-26 09:10:06] 2025-11-26 14:09:01,221 | INFO     | monitor loop #7090: job 0:6895350755 is in state 'finished'
[2025-11-26 09:10:06] 2025-11-26 14:09:01,221 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 09:10:06] 2025-11-26 14:09:02,875 | INFO     | time since job start (119235s) is within the limit (172800.0s)
[2025-11-26 09:10:06] 2025-11-26 14:09:03,728 | INFO     | monitor loop #7091: job 0:6895350755 is in state 'finished'
[2025-11-26 09:10:06] 2025-11-26 14:09:03,728 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 09:10:06] 2025-11-26 14:09:04,882 | INFO     | time since job start (119237s) is within the limit (172800.0s)
[2025-11-26 09:10:06] 2025-11-26 14:09:06,284 | INFO     | monitor loop #7092: job 0:6895350755 is in state 'finished'
[2025-11-26 09:10:06] 2025-11-26 14:09:06,284 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 09:10:06] 2025-11-26 14:09:06,889 | INFO     | time since job start (119239s) is within the limit (172800.0s)
[2025-11-26 09:10:06] 2025-11-26 14:09:08,814 | INFO     | monitor loop #7093: job 0:6895350755 is in state 'finished'
[2025-11-26 09:10:06] 2025-11-26 14:09:08,814 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 09:10:06] 2025-11-26 14:09:09,131 | INFO     | PID=3549167 has CPU usage=14.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-26 09:10:06] 2025-11-26 14:09:09,131 | INFO     | .. there are 27 such processes running
[2025-11-26 09:10:06] 2025-11-26 14:09:10,134 | INFO     | time since job start (119243s) is within the limit (172800.0s)
[2025-11-26 09:10:06] 2025-11-26 14:09:10,756 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 09:10:06] 2025-11-26 14:09:10,767 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 3030.4611964285714
[2025-11-26 09:10:06] 2025-11-26 14:09:10,777 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6895350755/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 09:10:06] 2025-11-26 14:09:10,777 | INFO     | extracted standard info from prmon json
[2025-11-26 09:10:06] 2025-11-26 14:09:10,778 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 09:10:06] 2025-11-26 14:09:10,778 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 09:10:06] 2025-11-26 14:09:10,806 | INFO     | fitting pss+swap vs Time
[2025-11-26 09:10:06] 2025-11-26 14:09:10,809 | INFO     | sum of square deviations: 2309695039354.144
[2025-11-26 09:10:06] 2025-11-26 14:09:10,875 | INFO     | sum of deviations: 8380562194347.688
[2025-11-26 09:10:06] 2025-11-26 14:09:10,875 | INFO     | mean x: 1764106560.5719407
[2025-11-26 09:10:06] 2025-11-26 14:09:10,875 | INFO     | mean y: 3138544.1694828467
[2025-11-26 09:10:06] 2025-11-26 14:09:10,875 | INFO     | intersect: -6397795127.344145
[2025-11-26 09:10:06] 2025-11-26 14:09:10,877 | INFO     | chi2: 14.858161608443408
[2025-11-26 09:10:06] 2025-11-26 14:09:10,879 | INFO     | sum of square deviations: 2292001709605.186
[2025-11-26 09:10:06] 2025-11-26 14:09:10,947 | INFO     | sum of deviations: 9089926038758.35
[2025-11-26 09:10:06] 2025-11-26 14:09:10,947 | INFO     | mean x: 1764106408.0811088
[2025-11-26 09:10:06] 2025-11-26 14:09:10,947 | INFO     | mean y: 3144657.162217659
[2025-11-26 09:10:06] 2025-11-26 14:09:10,947 | INFO     | intersect: -6993183795.279984
[2025-11-26 09:10:06] 2025-11-26 14:09:10,949 | INFO     | chi2: 11.697271518649588
[2025-11-26 09:10:06] 2025-11-26 14:09:10,949 | INFO     | current chi2=11.697271518649588 (change=21.27376302057174 %)
[2025-11-26 09:10:06] 2025-11-26 14:09:10,950 | INFO     | right removable region: 1947
[2025-11-26 09:10:06] 2025-11-26 14:09:10,952 | INFO     | sum of square deviations: 2291997454245.1836
[2025-11-26 09:10:06] 2025-11-26 14:09:11,017 | INFO     | sum of deviations: 7591119222129.599
[2025-11-26 09:10:06] 2025-11-26 14:09:11,017 | INFO     | mean x: 1764106713.0811088
[2025-11-26 09:10:06] 2025-11-26 14:09:11,017 | INFO     | mean y: 3145345.749486653
[2025-11-26 09:10:06] 2025-11-26 14:09:11,017 | INFO     | intersect: -5839594293.753326
[2025-11-26 09:10:06] 2025-11-26 14:09:11,019 | INFO     | chi2: 11.331316224749925
[2025-11-26 09:10:06] 2025-11-26 14:09:11,019 | INFO     | current chi2=11.331316224749925 (change=23.736754765739608 %)
[2025-11-26 09:10:06] 2025-11-26 14:09:11,019 | INFO     | left removable region: 10
[2025-11-26 09:10:06] 2025-11-26 14:09:11,021 | INFO     | sum of square deviations: 2253387545558.0996
[2025-11-26 09:10:06] 2025-11-26 14:09:11,086 | INFO     | sum of deviations: 8107689192724.582
[2025-11-26 09:10:06] 2025-11-26 14:09:11,086 | INFO     | mean x: 1764106682.5967991
[2025-11-26 09:10:06] 2025-11-26 14:09:11,086 | INFO     | mean y: 3155751.642230253
[2025-11-26 09:10:06] 2025-11-26 14:09:11,087 | INFO     | intersect: -6344100721.616072
[2025-11-26 09:10:06] 2025-11-26 14:09:11,088 | INFO     | chi2: 6.884377645939866
[2025-11-26 09:10:06] 2025-11-26 14:09:11,089 | INFO     | current memory leak: 3.60 B/s (using 1937 data points, chi2=6.88)
[2025-11-26 09:10:06] 2025-11-26 14:09:11,091 | INFO     | could have reported an average CPU frequency of 2924 MHz (68 samples)
[2025-11-26 09:10:06] 2025-11-26 14:09:11,091 | INFO     | ..............................
[2025-11-26 09:10:06] 2025-11-26 14:09:11,091 | INFO     | . Timing measurements:
[2025-11-26 09:10:06] 2025-11-26 14:09:11,091 | INFO     | . get job = 0 s
[2025-11-26 09:10:06] 2025-11-26 14:09:11,091 | INFO     | . initial setup = 4 s
[2025-11-26 09:10:06] 2025-11-26 14:09:11,091 | INFO     | . payload setup = 33 s
[2025-11-26 09:10:06] 2025-11-26 14:09:11,091 | INFO     | . stage-in = 0 s
[2025-11-26 09:10:06] 2025-11-26 14:09:11,091 | INFO     | . payload execution = 119124 s
[2025-11-26 09:10:06] 2025-11-26 14:09:11,091 | INFO     | . stage-out = 7 s
[2025-11-26 09:10:06] 2025-11-26 14:09:11,091 | INFO     | . log creation = 1 s
[2025-11-26 09:10:06] 2025-11-26 14:09:11,091 | INFO     | ..............................
[2025-11-26 09:10:06] 2025-11-26 14:09:11,179 | INFO     | 
[2025-11-26 09:10:06] 2025-11-26 14:09:11,179 | INFO     | job summary report
[2025-11-26 09:10:06] 2025-11-26 14:09:11,179 | INFO     | --------------------------------------------------
[2025-11-26 09:10:06] 2025-11-26 14:09:11,180 | INFO     | PanDA job id: 6895350755
[2025-11-26 09:10:06] 2025-11-26 14:09:11,180 | INFO     | task id: 47556149
[2025-11-26 09:10:06] 2025-11-26 14:09:11,180 | INFO     | errors: (none)
[2025-11-26 09:10:06] 2025-11-26 14:09:11,180 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 09:10:06] 2025-11-26 14:09:11,180 | INFO     | pilot state: finished 
[2025-11-26 09:10:06] 2025-11-26 14:09:11,180 | INFO     | transexitcode: 0
[2025-11-26 09:10:06] 2025-11-26 14:09:11,180 | INFO     | exeerrorcode: 0
[2025-11-26 09:10:06] 2025-11-26 14:09:11,180 | INFO     | exeerrordiag: 
[2025-11-26 09:10:06] 2025-11-26 14:09:11,180 | INFO     | exitcode: 0
[2025-11-26 09:10:06] 2025-11-26 14:09:11,180 | INFO     | exitmsg: OK
[2025-11-26 09:10:06] 2025-11-26 14:09:11,180 | INFO     | cpuconsumptiontime: 245913 s
[2025-11-26 09:10:06] 2025-11-26 14:09:11,180 | INFO     | nevents: 1000
[2025-11-26 09:10:06] 2025-11-26 14:09:11,181 | INFO     | neventsw: 0
[2025-11-26 09:10:06] 2025-11-26 14:09:11,181 | INFO     | pid: 3564953
[2025-11-26 09:10:06] 2025-11-26 14:09:11,181 | INFO     | pgrp: 3564953
[2025-11-26 09:10:06] 2025-11-26 14:09:11,181 | INFO     | corecount: 9
[2025-11-26 09:10:06] 2025-11-26 14:09:11,181 | INFO     | event service: False
[2025-11-26 09:10:06] 2025-11-26 14:09:11,181 | INFO     | sizes: {0: 2284037, 1: 2284236, 12: 2284236, 23: 2284264, 25: 2284554, 34: 2284582, 119161: 2364655, 119170: 2373654, 119171: 2373710, 119184: 2373956}
[2025-11-26 09:10:06] 2025-11-26 14:09:11,181 | INFO     | --------------------------------------------------
[2025-11-26 09:10:06] 2025-11-26 14:09:11,181 | INFO     | 
[2025-11-26 09:10:06] 2025-11-26 14:09:11,181 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-26 09:10:06] 2025-11-26 14:09:11,228 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 09:10:06] 2025-11-26 14:09:11,228 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 09:10:06] 2025-11-26 14:09:11,228 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 09:10:06] 2025-11-26 14:09:11,228 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 09:10:06] 2025-11-26 14:09:11,228 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 09:10:06] 2025-11-26 14:09:11,228 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 09:10:06] 2025-11-26 14:09:11,228 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 09:10:06] 2025-11-26 14:09:11,228 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 09:10:06] 2025-11-26 14:09:11,229 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 09:10:06] 2025-11-26 14:09:11,229 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 09:10:06] 2025-11-26 14:09:11,229 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 09:10:06] 2025-11-26 14:09:11,229 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 09:10:06] 2025-11-26 14:09:11,229 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 09:10:06] 2025-11-26 14:09:11,229 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 09:10:06] 2025-11-26 14:09:11,229 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 09:10:06] 2025-11-26 14:09:11,229 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 09:10:06] 2025-11-26 14:09:11,229 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 09:10:06] 2025-11-26 14:09:11,229 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 09:10:06] 2025-11-26 14:09:11,229 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 09:10:06] 2025-11-26 14:09:11,229 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 09:10:06] 2025-11-26 14:09:11,230 | INFO     | job 6895350755 has completed (purged errors)
[2025-11-26 09:10:06] 2025-11-26 14:09:11,230 | INFO     | overall cleanup function is called
[2025-11-26 09:10:06] 2025-11-26 14:09:12,267 | INFO     | --- collectZombieJob: --- 10, [3564953]
[2025-11-26 09:10:06] 2025-11-26 14:09:12,267 | INFO     | zombie collector waiting for pid 3564953
[2025-11-26 09:10:06] 2025-11-26 14:09:12,267 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 09:10:06] 2025-11-26 14:09:12,267 | INFO     | collected zombie processes
[2025-11-26 09:10:06] 2025-11-26 14:09:12,267 | INFO     | will attempt to kill all subprocesses of pid=3564953
[2025-11-26 09:10:06] 2025-11-26 14:09:13,637 | INFO     | process IDs to be killed: [3564953] (in reverse order)
[2025-11-26 09:10:06] 2025-11-26 14:09:13,881 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 09:10:06] 2025-11-26 14:09:13,881 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 09:10:06] 2025-11-26 14:09:13,903 | INFO     | did not find any defunct processes belonging to 3564953
[2025-11-26 09:10:06] 2025-11-26 14:09:13,931 | INFO     | did not find any defunct processes belonging to 3564953
[2025-11-26 09:10:06] 2025-11-26 14:09:13,937 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 09:10:06] 2025-11-26 14:09:13,937 | INFO     | ready for new job
[2025-11-26 09:10:06] 2025-11-26 14:09:13,937 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 09:10:06] 2025-11-26 14:09:13,953 | INFO     | ***************************************
[2025-11-26 09:10:06] 2025-11-26 14:09:13,953 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 09:10:06] 2025-11-26 14:09:13,953 | INFO     | ***************************************
[2025-11-26 09:10:06] 2025-11-26 14:09:13,953 | INFO     | 
[2025-11-26 09:10:06] 2025-11-26 14:09:13,960 | INFO     | architecture information:
[2025-11-26 09:10:06] 2025-11-26 14:09:13,961 | INFO     | executing command: cat /etc/os-release
[2025-11-26 09:10:06] 2025-11-26 14:09:14,007 | INFO     | cat /etc/os-release:
[2025-11-26 09:10:06] NAME="CentOS Linux"
[2025-11-26 09:10:06] VERSION="7 (Core)"
[2025-11-26 09:10:06] ID="centos"
[2025-11-26 09:10:06] ID_LIKE="rhel fedora"
[2025-11-26 09:10:06] VERSION_ID="7"
[2025-11-26 09:10:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 09:10:06] ANSI_COLOR="0;31"
[2025-11-26 09:10:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 09:10:06] HOME_URL="https://www.centos.org/"
[2025-11-26 09:10:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 09:10:06] 
[2025-11-26 09:10:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 09:10:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 09:10:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 09:10:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 09:10:06] 
[2025-11-26 09:10:06] 2025-11-26 14:09:14,008 | INFO     | ***************************************
[2025-11-26 09:10:06] 2025-11-26 14:09:14,511 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-26 09:10:06] 2025-11-26 14:09:14,568 | INFO     | sufficient remaining disk space (67626860544 B)
[2025-11-26 09:10:06] 2025-11-26 14:09:14,568 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 09:10:06] 2025-11-26 14:09:14,568 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 09:10:06] 2025-11-26 14:09:14,568 | INFO     | update_server=False
[2025-11-26 09:10:06] 2025-11-26 14:09:14,568 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 09:10:06] 2025-11-26 14:09:14,891 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 09:10:06] 2025-11-26 14:09:14,891 | INFO     | aborting loop
[2025-11-26 09:10:06] 2025-11-26 14:09:15,254 | INFO     | all payload control threads have been joined
[2025-11-26 09:10:06] 2025-11-26 14:09:15,254 | INFO     | all data control threads have been joined
[2025-11-26 09:10:06] 2025-11-26 14:09:15,574 | INFO     | [job] retrieve thread has finished
[2025-11-26 09:10:06] 2025-11-26 14:09:15,642 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 09:10:06] 2025-11-26 14:09:15,683 | INFO     | [job] validate thread has finished
[2025-11-26 09:10:06] 2025-11-26 14:09:15,902 | INFO     | [job] job monitor thread has finished
[2025-11-26 09:10:06] 2025-11-26 14:09:16,202 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 09:10:06] 2025-11-26 14:09:16,260 | INFO     | [payload] control thread has finished
[2025-11-26 09:10:06] 2025-11-26 14:09:16,261 | INFO     | [data] control thread has finished
[2025-11-26 09:10:06] 2025-11-26 14:09:16,270 | INFO     | all job control threads have been joined
[2025-11-26 09:10:06] 2025-11-26 14:09:16,493 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 09:10:06] 2025-11-26 14:09:16,612 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 09:10:06] 2025-11-26 14:09:16,613 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 09:10:06] 2025-11-26 14:09:16,661 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 09:10:06] 2025-11-26 14:09:16,788 | INFO     | [data] copytool_in thread has finished
[2025-11-26 09:10:06] 2025-11-26 14:09:16,805 | INFO     | [payload] failed_post thread has finished
[2025-11-26 09:10:06] 2025-11-26 14:09:16,806 | INFO     | [payload] validate_post thread has finished
[2025-11-26 09:10:06] 2025-11-26 14:09:17,207 | INFO     | [job] queue monitor thread has finished
[2025-11-26 09:10:06] 2025-11-26 14:09:17,276 | INFO     | [job] control thread has finished
[2025-11-26 09:10:06] 2025-11-26 14:09:17,643 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 09:10:06] 2025-11-26 14:09:17,674 | INFO     | [data] copytool_out thread has finished
[2025-11-26 09:10:06] 2025-11-26 14:09:21,652 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 09:10:06] 2025-11-26 14:09:26,543 | INFO     | [monitor] cgroup control has ended
[2025-11-26 09:10:06] 2025-11-26 14:09:27,523 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139867520259904)>', '<ExcThread(monitor, started 139866784380672)>']
[2025-11-26 09:10:06] 2025-11-26 14:09:32,571 | INFO     | all workflow threads have been joined
[2025-11-26 09:10:06] 2025-11-26 14:09:32,571 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 09:10:06] 2025-11-26 14:09:32,572 | INFO     | traces error code: 0
[2025-11-26 09:10:06] 2025-11-26 14:09:32,572 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 09:10:06] 2025-11-26 14:09:44,309 | INFO     | PID=3549167 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 09:10:06] 2025-11-26 14:09:44,310 | INFO     | .. there are 27 such processes running
[2025-11-26 09:10:06] 2025-11-26 14:09:44,310 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 09:10:06] 2025-11-26 14:09:44,310 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 09:10:06] 2025-11-26 14:09:44,310 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 09:10:06] 2025-11-26 14:09:44,310 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 09:10:06] 2025-11-26 14:09:44,310 | INFO     | [monitor] control thread has ended
[2025-11-26 09:10:06] 2025-11-26 14:09:45,087 [wrapper] ==== pilot stdout END ====
[2025-11-26 09:10:06] 2025-11-26 14:09:45,111 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 09:10:06] 2025-11-26 14:09:45,128 [wrapper] pilotpid: 3549167
[2025-11-26 09:10:06] 2025-11-26 14:09:45,152 [wrapper] Pilot exit status: 0
[2025-11-26 09:10:06] 2025-11-26 14:09:45,261 [wrapper] pandaids: 6895350755
[2025-11-26 09:10:06] 2025-11-26 14:09:45,525 [wrapper] cleanup supervisor_pilot 1068844 3549168
[2025-11-26 09:10:06] 2025-11-26 14:09:45,537 [wrapper] Test setup, not cleaning
[2025-11-26 09:10:06] 2025-11-26 14:09:45,559 [wrapper] apfmon messages muted
[2025-11-26 09:10:06] 2025-11-26 14:09:45,574 [wrapper] ==== wrapper stdout END ====
[2025-11-26 09:10:06] 2025-11-26 14:09:45,602 [wrapper] ==== wrapper stderr END ====
[2025-11-26 09:10:06]  *** Error codes and diagnostics ***
[2025-11-26 09:10:06]     "exeErrorCode": 0,
[2025-11-26 09:10:06]     "exeErrorDiag": "",
[2025-11-26 09:10:06]     "pilotErrorCode": 0,
[2025-11-26 09:10:06]     "pilotErrorDiag": "",
[2025-11-26 09:10:06]  *** Listing of results directory ***
[2025-11-26 09:10:06] total 1316816
[2025-11-26 09:10:06] -rw-r--r--. 1 boincer umatlas    576529 Nov 22 16:52 pilot3.tar.gz
[2025-11-26 09:10:06] -rwx------. 1 boincer umatlas     36292 Nov 22 16:57 runpilot2-wrapper.sh
[2025-11-26 09:10:06] -rw-r--r--. 1 boincer umatlas      5112 Nov 22 16:57 queuedata.json
[2025-11-26 09:10:06] -rw-r--r--. 1 boincer umatlas       100 Nov 25 00:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 09:10:06] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 00:00 run_atlas
[2025-11-26 09:10:06] -rw-r--r--. 1 boincer umatlas       105 Nov 25 00:00 job.xml
[2025-11-26 09:10:06] -rw-r--r--. 2 boincer umatlas 409101552 Nov 25 00:00 EVNT.47483658._001119.pool.root.1
[2025-11-26 09:10:06] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 00:00 shared
[2025-11-26 09:10:06] -rw-r--r--. 2 boincer umatlas    590098 Nov 25 00:00 input.tar.gz
[2025-11-26 09:10:06] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:00 start_atlas.sh
[2025-11-26 09:10:06] -rw-r--r--. 1 boincer umatlas         0 Nov 25 00:00 boinc_lockfile
[2025-11-26 09:10:06] -rw-r--r--. 1 boincer umatlas      2784 Nov 25 00:00 pandaJob.out
[2025-11-26 09:10:06] -rw-------. 1 boincer umatlas        57 Nov 25 00:00 setup.sh.local
[2025-11-26 09:10:06] -rw-------. 1 boincer umatlas    991801 Nov 25 00:01 agis_schedconf.cvmfs.json
[2025-11-26 09:10:06] drwx------. 5 boincer umatlas      4096 Nov 25 00:01 pilot3
[2025-11-26 09:10:06] -rw-r--r--. 1 boincer umatlas       533 Nov 26 08:47 boinc_task_state.xml
[2025-11-26 09:10:06] -rw-r--r--. 1 boincer umatlas      6842 Nov 26 09:03 init_data.xml
[2025-11-26 09:10:06] -rw-------. 1 boincer umatlas 899719707 Nov 26 09:07 HITS.47556149._001057.pool.root.1
[2025-11-26 09:10:06] -rw-------. 1 boincer umatlas      1064 Nov 26 09:08 memory_monitor_summary.json
[2025-11-26 09:10:06] -rw-------. 1 boincer umatlas        95 Nov 26 09:08 pilot_heartbeat.json
[2025-11-26 09:10:06] -rw-------. 1 boincer umatlas   1516240 Nov 26 09:08 agis_ddmendpoints.agis.ALL.json
[2025-11-26 09:10:06] -rw-------. 1 boincer umatlas   2927020 Nov 26 09:08 log.47556149._001057.job.log.tgz.1
[2025-11-26 09:10:06] -rw-------. 1 boincer umatlas      8623 Nov 26 09:09 heartbeat.json
[2025-11-26 09:10:06] -rw-------. 1 boincer umatlas       823 Nov 26 09:09 pilotlog.txt
[2025-11-26 09:10:06] -rw-------. 1 boincer umatlas  14916498 Nov 26 09:09 log.47556149._001057.job.log.1
[2025-11-26 09:10:06] -rw-------. 1 boincer umatlas       353 Nov 26 09:09 output.list
[2025-11-26 09:10:06] -rw-r--r--. 1 boincer umatlas       620 Nov 26 09:09 runtime_log
[2025-11-26 09:10:06] -rw-------. 1 boincer umatlas  17858560 Nov 26 09:09 result.tar.gz
[2025-11-26 09:10:06] -rw-r--r--. 1 boincer umatlas      9344 Nov 26 09:09 runtime_log.err
[2025-11-26 09:10:06] -rw-------. 1 boincer umatlas       663 Nov 26 09:09 7e9NDmEnAh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmbQKKDmhLIdin.diag
[2025-11-26 09:10:06] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 09:10 boinc_mmap_file
[2025-11-26 09:10:06] -rw-r--r--. 1 boincer umatlas        29 Nov 26 09:10 wrapper_checkpoint.txt
[2025-11-26 09:10:06] -rw-r--r--. 1 boincer umatlas     21890 Nov 26 09:10 stderr.txt
[2025-11-26 09:10:06] HITS file was successfully produced:
[2025-11-26 09:10:06] -rw-------. 1 boincer umatlas 899719707 Nov 26 09:07 shared/HITS.pool.root.1
[2025-11-26 09:10:06]  *** Contents of shared directory: ***
[2025-11-26 09:10:06] total 1296192
[2025-11-26 09:10:06] -rw-r--r--. 2 boincer umatlas 409101552 Nov 25 00:00 ATLAS.root_0
[2025-11-26 09:10:06] -rw-r--r--. 2 boincer umatlas    590098 Nov 25 00:00 input.tar.gz
[2025-11-26 09:10:06] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:00 start_atlas.sh
[2025-11-26 09:10:06] -rw-------. 1 boincer umatlas 899719707 Nov 26 09:07 HITS.pool.root.1
[2025-11-26 09:10:06] -rw-------. 1 boincer umatlas  17858560 Nov 26 09:09 result.tar.gz
09:10:08 (3539867): run_atlas exited; CPU time 248323.880364
09:10:08 (3539867): called boinc_finish(0)

</stderr_txt>
]]>

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