Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:56:03 (28259): wrapper (7.7.26015): starting
17:56:03 (28259): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 17:56:03] Arguments: --nthreads 8
[2025-11-26 17:56:03] Threads: 8
[2025-11-26 17:56:03] Checking for CVMFS
[2025-11-26 17:56:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 17:56:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 17:56:03] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 17:56:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 17:56:04] 2.11.2.0 4250 83145 91668 153328 1 271 21744483 25165824 1016 130560 19 22633746 99.891 13462976 1677 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-26 17:56:04] CVMFS is ok
[2025-11-26 17:56:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 17:56:04] Checking for apptainer binary...
[2025-11-26 17:56:04] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 17:56:04] Running /usr/bin/apptainer --version
[2025-11-26 17:56:04] apptainer version 1.3.2-1.el7
[2025-11-26 17:56:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 17:56:05] cg-vwn215.simple-grid.lan
[2025-11-26 17:56:05] apptainer works
[2025-11-26 17:56:05] Set ATHENA_PROC_NUMBER=8
[2025-11-26 17:56:05] Set ATHENA_CORE_NUMBER=8
[2025-11-26 17:56:05] Starting ATLAS job with PandaID=6895355786
[2025-11-26 17:56:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/15 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 17:09:02]  *** The last 200 lines of the pilot log: ***
[2025-11-27 17:09:02] 2025-11-27 16:07:56,838 | INFO     | time since job start (83489s) is within the limit (172800.0s)
[2025-11-27 17:09:02] 2025-11-27 16:07:58,061 | INFO     | PID=31996 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 17:09:02] 2025-11-27 16:07:58,061 | INFO     | .. there are 9 such processes running
[2025-11-27 17:09:02] 2025-11-27 16:07:58,671 | INFO     | monitor loop #5563: job 0:6895355786 is in state 'finished'
[2025-11-27 17:09:02] 2025-11-27 16:07:58,671 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 17:09:02] 2025-11-27 16:07:59,062 | INFO     | time since job start (83492s) is within the limit (172800.0s)
[2025-11-27 17:09:02] 2025-11-27 16:08:01,068 | INFO     | time since job start (83494s) is within the limit (172800.0s)
[2025-11-27 17:09:02] 2025-11-27 16:08:01,181 | INFO     | monitor loop #5564: job 0:6895355786 is in state 'finished'
[2025-11-27 17:09:02] 2025-11-27 16:08:01,181 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 17:09:02] 2025-11-27 16:08:03,075 | INFO     | time since job start (83496s) is within the limit (172800.0s)
[2025-11-27 17:09:02] 2025-11-27 16:08:03,686 | INFO     | monitor loop #5565: job 0:6895355786 is in state 'finished'
[2025-11-27 17:09:02] 2025-11-27 16:08:03,686 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 17:09:02] 2025-11-27 16:08:05,082 | INFO     | time since job start (83498s) is within the limit (172800.0s)
[2025-11-27 17:09:02] 2025-11-27 16:08:06,174 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 17:09:02] 2025-11-27 16:08:06,176 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-27 17:09:02] 2025-11-27 16:08:06,179 | INFO     | using path: /var/lib/boinc/slots/15/PanDA_Pilot-6895355786/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 17:09:02] 2025-11-27 16:08:06,179 | INFO     | extracted standard info from prmon json
[2025-11-27 17:09:02] 2025-11-27 16:08:06,179 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 17:09:02] 2025-11-27 16:08:06,179 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 17:09:02] 2025-11-27 16:08:06,216 | INFO     | fitting pss+swap vs Time
[2025-11-27 17:09:02] 2025-11-27 16:08:06,218 | INFO     | sum of square deviations: 792104365405.5297
[2025-11-27 17:09:02] 2025-11-27 16:08:06,249 | INFO     | monitor loop #5566: job 0:6895355786 is in state 'finished'
[2025-11-27 17:09:02] 2025-11-27 16:08:06,249 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 17:09:02] 2025-11-27 16:08:06,290 | INFO     | sum of deviations: 2318633296383.1797
[2025-11-27 17:09:02] 2025-11-27 16:08:06,290 | INFO     | mean x: 1764217895.0687637
[2025-11-27 17:09:02] 2025-11-27 16:08:06,291 | INFO     | mean y: 2858781.6576444767
[2025-11-27 17:09:02] 2025-11-27 16:08:06,291 | INFO     | intersect: -5161327318.348574
[2025-11-27 17:09:02] 2025-11-27 16:08:06,292 | INFO     | chi2: 14.65917758838742
[2025-11-27 17:09:02] 2025-11-27 16:08:06,294 | INFO     | sum of square deviations: 783444825377.3042
[2025-11-27 17:09:02] 2025-11-27 16:08:06,362 | INFO     | sum of deviations: 2775883856651.4854
[2025-11-27 17:09:02] 2025-11-27 16:08:06,363 | INFO     | mean x: 1764217742.5726871
[2025-11-27 17:09:02] 2025-11-27 16:08:06,363 | INFO     | mean y: 2866832.4647577093
[2025-11-27 17:09:02] 2025-11-27 16:08:06,363 | INFO     | intersect: -6248069280.192753
[2025-11-27 17:09:02] 2025-11-27 16:08:06,365 | INFO     | chi2: 11.389925211178848
[2025-11-27 17:09:02] 2025-11-27 16:08:06,365 | INFO     | current chi2=11.389925211178848 (change=22.301744811375908 %)
[2025-11-27 17:09:02] 2025-11-27 16:08:06,365 | INFO     | right removable region: 1361
[2025-11-27 17:09:02] 2025-11-27 16:08:06,367 | INFO     | sum of square deviations: 783443934167.3041
[2025-11-27 17:09:02] 2025-11-27 16:08:06,427 | INFO     | sum of deviations: 1893790132307.461
[2025-11-27 17:09:02] 2025-11-27 16:08:06,427 | INFO     | mean x: 1764218047.5726871
[2025-11-27 17:09:02] 2025-11-27 16:08:06,428 | INFO     | mean y: 2866258.4801762113
[2025-11-27 17:09:02] 2025-11-27 16:08:06,428 | INFO     | intersect: -4261712971.791084
[2025-11-27 17:09:02] 2025-11-27 16:08:06,429 | INFO     | chi2: 12.057088992374984
[2025-11-27 17:09:02] 2025-11-27 16:08:06,430 | INFO     | current chi2=12.057088992374984 (change=17.75057693600585 %)
[2025-11-27 17:09:02] 2025-11-27 16:08:06,430 | INFO     | left removable region: 10
[2025-11-27 17:09:02] 2025-11-27 16:08:06,431 | INFO     | sum of square deviations: 764615298917.1473
[2025-11-27 17:09:02] 2025-11-27 16:08:06,490 | INFO     | sum of deviations: 2350311929431.1865
[2025-11-27 17:09:02] 2025-11-27 16:08:06,491 | INFO     | mean x: 1764218017.0762398
[2025-11-27 17:09:02] 2025-11-27 16:08:06,491 | INFO     | mean y: 2877980.2894152477
[2025-11-27 17:09:02] 2025-11-27 16:08:06,491 | INFO     | intersect: -5420061709.151751
[2025-11-27 17:09:02] 2025-11-27 16:08:06,496 | INFO     | chi2: 7.924497641526663
[2025-11-27 17:09:02] 2025-11-27 16:08:06,496 | INFO     | current memory leak: 3.07 B/s (using 1351 data points, chi2=7.92)
[2025-11-27 17:09:02] 2025-11-27 16:08:06,498 | INFO     | could have reported an average CPU frequency of 1999 MHz (46 samples)
[2025-11-27 17:09:02] 2025-11-27 16:08:06,498 | INFO     | ..............................
[2025-11-27 17:09:02] 2025-11-27 16:08:06,498 | INFO     | . Timing measurements:
[2025-11-27 17:09:02] 2025-11-27 16:08:06,498 | INFO     | . get job = 0 s
[2025-11-27 17:09:02] 2025-11-27 16:08:06,498 | INFO     | . initial setup = 2 s
[2025-11-27 17:09:02] 2025-11-27 16:08:06,498 | INFO     | . payload setup = 10 s
[2025-11-27 17:09:02] 2025-11-27 16:08:06,498 | INFO     | . stage-in = 0 s
[2025-11-27 17:09:02] 2025-11-27 16:08:06,498 | INFO     | . payload execution = 83356 s
[2025-11-27 17:09:02] 2025-11-27 16:08:06,498 | INFO     | . stage-out = 4 s
[2025-11-27 17:09:02] 2025-11-27 16:08:06,499 | INFO     | . log creation = 1 s
[2025-11-27 17:09:02] 2025-11-27 16:08:06,499 | INFO     | ..............................
[2025-11-27 17:09:02] 2025-11-27 16:08:06,900 | INFO     | 
[2025-11-27 17:09:02] 2025-11-27 16:08:06,900 | INFO     | job summary report
[2025-11-27 17:09:02] 2025-11-27 16:08:06,900 | INFO     | --------------------------------------------------
[2025-11-27 17:09:02] 2025-11-27 16:08:06,900 | INFO     | PanDA job id: 6895355786
[2025-11-27 17:09:02] 2025-11-27 16:08:06,900 | INFO     | task id: 47556137
[2025-11-27 17:09:02] 2025-11-27 16:08:06,900 | INFO     | errors: (none)
[2025-11-27 17:09:02] 2025-11-27 16:08:06,900 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 17:09:02] 2025-11-27 16:08:06,900 | INFO     | pilot state: finished 
[2025-11-27 17:09:02] 2025-11-27 16:08:06,901 | INFO     | transexitcode: 0
[2025-11-27 17:09:02] 2025-11-27 16:08:06,901 | INFO     | exeerrorcode: 0
[2025-11-27 17:09:02] 2025-11-27 16:08:06,901 | INFO     | exeerrordiag: 
[2025-11-27 17:09:02] 2025-11-27 16:08:06,901 | INFO     | exitcode: 0
[2025-11-27 17:09:02] 2025-11-27 16:08:06,901 | INFO     | exitmsg: OK
[2025-11-27 17:09:02] 2025-11-27 16:08:06,901 | INFO     | cpuconsumptiontime: 317733 s
[2025-11-27 17:09:02] 2025-11-27 16:08:06,901 | INFO     | nevents: 1000
[2025-11-27 17:09:02] 2025-11-27 16:08:06,901 | INFO     | neventsw: 0
[2025-11-27 17:09:02] 2025-11-27 16:08:06,901 | INFO     | pid: 6124
[2025-11-27 17:09:02] 2025-11-27 16:08:06,901 | INFO     | pgrp: 6124
[2025-11-27 17:09:02] 2025-11-27 16:08:06,901 | INFO     | corecount: 8
[2025-11-27 17:09:02] 2025-11-27 16:08:06,902 | INFO     | event service: False
[2025-11-27 17:09:02] 2025-11-27 16:08:06,902 | INFO     | sizes: {0: 2284145, 1: 2284344, 9: 2284606, 11: 2284634, 83371: 2341163, 83375: 2350159, 83379: 2350343, 83480: 2350589}
[2025-11-27 17:09:02] 2025-11-27 16:08:06,902 | INFO     | --------------------------------------------------
[2025-11-27 17:09:02] 2025-11-27 16:08:06,902 | INFO     | 
[2025-11-27 17:09:02] 2025-11-27 16:08:06,902 | INFO     | executing command: ls -lF /var/lib/boinc/slots/15
[2025-11-27 17:09:02] 2025-11-27 16:08:07,096 | INFO     | time since job start (83500s) is within the limit (172800.0s)
[2025-11-27 17:09:02] 2025-11-27 16:08:07,487 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 17:09:02] 2025-11-27 16:08:07,488 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 17:09:02] 2025-11-27 16:08:07,488 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 17:09:02] 2025-11-27 16:08:07,488 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 17:09:02] 2025-11-27 16:08:07,488 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 17:09:02] 2025-11-27 16:08:07,488 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 17:09:02] 2025-11-27 16:08:07,488 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 17:09:02] 2025-11-27 16:08:07,488 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 17:09:02] 2025-11-27 16:08:07,488 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 17:09:02] 2025-11-27 16:08:07,488 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 17:09:02] 2025-11-27 16:08:07,488 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 17:09:02] 2025-11-27 16:08:07,488 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 17:09:02] 2025-11-27 16:08:07,489 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 17:09:02] 2025-11-27 16:08:07,489 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 17:09:02] 2025-11-27 16:08:07,489 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 17:09:02] 2025-11-27 16:08:07,489 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 17:09:02] 2025-11-27 16:08:07,489 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 17:09:02] 2025-11-27 16:08:07,489 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 17:09:02] 2025-11-27 16:08:07,489 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 17:09:02] 2025-11-27 16:08:07,489 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 17:09:02] 2025-11-27 16:08:07,489 | INFO     | job 6895355786 has completed (purged errors)
[2025-11-27 17:09:02] 2025-11-27 16:08:07,489 | INFO     | overall cleanup function is called
[2025-11-27 17:09:02] 2025-11-27 16:08:08,507 | INFO     | --- collectZombieJob: --- 10, [6124]
[2025-11-27 17:09:02] 2025-11-27 16:08:08,507 | INFO     | zombie collector waiting for pid 6124
[2025-11-27 17:09:02] 2025-11-27 16:08:08,507 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 17:09:02] 2025-11-27 16:08:08,507 | INFO     | collected zombie processes
[2025-11-27 17:09:02] 2025-11-27 16:08:08,507 | INFO     | will attempt to kill all subprocesses of pid=6124
[2025-11-27 17:09:02] 2025-11-27 16:08:08,605 | INFO     | process IDs to be killed: [6124] (in reverse order)
[2025-11-27 17:09:02] 2025-11-27 16:08:08,753 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 17:09:02] 2025-11-27 16:08:08,753 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 17:09:02] 2025-11-27 16:08:08,756 | INFO     | did not find any defunct processes belonging to 6124
[2025-11-27 17:09:02] 2025-11-27 16:08:08,759 | INFO     | did not find any defunct processes belonging to 6124
[2025-11-27 17:09:02] 2025-11-27 16:08:08,807 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 17:09:02] 2025-11-27 16:08:08,807 | INFO     | ready for new job
[2025-11-27 17:09:02] 2025-11-27 16:08:08,807 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 17:09:02] 2025-11-27 16:08:08,812 | INFO     | ***************************************
[2025-11-27 17:09:02] 2025-11-27 16:08:08,812 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 17:09:02] 2025-11-27 16:08:08,813 | INFO     | ***************************************
[2025-11-27 17:09:02] 2025-11-27 16:08:08,813 | INFO     | 
[2025-11-27 17:09:02] 2025-11-27 16:08:08,813 | INFO     | pilot is running in a VM
[2025-11-27 17:09:02] 2025-11-27 16:08:08,813 | INFO     | architecture information:
[2025-11-27 17:09:02] 2025-11-27 16:08:08,815 | INFO     | executing command: cat /etc/os-release
[2025-11-27 17:09:02] 2025-11-27 16:08:08,896 | INFO     | cat /etc/os-release:
[2025-11-27 17:09:02] NAME="CentOS Linux"
[2025-11-27 17:09:02] VERSION="7 (Core)"
[2025-11-27 17:09:02] ID="centos"
[2025-11-27 17:09:02] ID_LIKE="rhel fedora"
[2025-11-27 17:09:02] VERSION_ID="7"
[2025-11-27 17:09:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 17:09:02] ANSI_COLOR="0;31"
[2025-11-27 17:09:02] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 17:09:02] HOME_URL="https://www.centos.org/"
[2025-11-27 17:09:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 17:09:02] 
[2025-11-27 17:09:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 17:09:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 17:09:02] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 17:09:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 17:09:02] 
[2025-11-27 17:09:02] 2025-11-27 16:08:08,896 | INFO     | ***************************************
[2025-11-27 17:09:02] 2025-11-27 16:08:09,400 | INFO     | executing command: df -mP /var/lib/boinc/slots/15
[2025-11-27 17:09:02] 2025-11-27 16:08:09,550 | INFO     | sufficient remaining disk space (495656632320 B)
[2025-11-27 17:09:02] 2025-11-27 16:08:09,551 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 17:09:02] 2025-11-27 16:08:09,551 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 17:09:02] 2025-11-27 16:08:09,551 | INFO     | update_server=False
[2025-11-27 17:09:02] 2025-11-27 16:08:09,551 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 17:09:02] 2025-11-27 16:08:09,766 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 17:09:02] 2025-11-27 16:08:09,766 | INFO     | aborting loop
[2025-11-27 17:09:02] 2025-11-27 16:08:10,102 | INFO     | all data control threads have been joined
[2025-11-27 17:09:02] 2025-11-27 16:08:10,268 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 17:09:02] 2025-11-27 16:08:10,326 | INFO     | all job control threads have been joined
[2025-11-27 17:09:02] 2025-11-27 16:08:10,557 | INFO     | [job] retrieve thread has finished
[2025-11-27 17:09:02] 2025-11-27 16:08:10,741 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 17:09:02] 2025-11-27 16:08:10,772 | INFO     | [job] job monitor thread has finished
[2025-11-27 17:09:02] 2025-11-27 16:08:10,928 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 17:09:02] 2025-11-27 16:08:10,985 | INFO     | all payload control threads have been joined
[2025-11-27 17:09:02] 2025-11-27 16:08:11,015 | INFO     | [payload] validate_post thread has finished
[2025-11-27 17:09:02] 2025-11-27 16:08:11,108 | INFO     | [data] control thread has finished
[2025-11-27 17:09:02] 2025-11-27 16:08:11,120 | INFO     | [job] validate thread has finished
[2025-11-27 17:09:02] 2025-11-27 16:08:11,327 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 17:09:02] 2025-11-27 16:08:11,332 | INFO     | [job] control thread has finished
[2025-11-27 17:09:02] 2025-11-27 16:08:11,531 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 17:09:02] 2025-11-27 16:08:11,622 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 17:09:02] 2025-11-27 16:08:11,666 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 17:09:02] 2025-11-27 16:08:11,912 | INFO     | [payload] failed_post thread has finished
[2025-11-27 17:09:02] 2025-11-27 16:08:11,990 | INFO     | [data] copytool_in thread has finished
[2025-11-27 17:09:02] 2025-11-27 16:08:11,991 | INFO     | [payload] control thread has finished
[2025-11-27 17:09:02] 2025-11-27 16:08:12,275 | INFO     | [data] copytool_out thread has finished
[2025-11-27 17:09:02] 2025-11-27 16:08:12,628 | INFO     | [job] queue monitor thread has finished
[2025-11-27 17:09:02] 2025-11-27 16:08:14,750 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 17:09:02] 2025-11-27 16:08:40,243 | INFO     | PID=31996 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 17:09:02] 2025-11-27 16:08:40,243 | INFO     | .. there are 9 such processes running
[2025-11-27 17:09:02] 2025-11-27 16:08:40,244 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 17:09:02] 2025-11-27 16:08:40,244 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 17:09:02] 2025-11-27 16:08:40,244 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 17:09:02] 2025-11-27 16:08:53,182 | INFO     | [monitor] cgroup control has ended
[2025-11-27 17:09:02] 2025-11-27 16:08:53,495 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140367589058368)>', '<ExcThread(monitor, started 140367148070656)>']
[2025-11-27 17:09:02] 2025-11-27 16:08:54,328 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 17:09:02] 2025-11-27 16:08:54,328 | INFO     | [monitor] control thread has ended
[2025-11-27 17:09:02] 2025-11-27 16:08:58,521 | INFO     | all workflow threads have been joined
[2025-11-27 17:09:02] 2025-11-27 16:08:58,521 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 17:09:02] 2025-11-27 16:08:58,521 | INFO     | traces error code: 0
[2025-11-27 17:09:02] 2025-11-27 16:08:58,521 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 17:09:02] 2025-11-27 16:08:58,931 [wrapper] ==== pilot stdout END ====
[2025-11-27 17:09:02] 2025-11-27 16:08:59,030 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 17:09:02] 2025-11-27 16:08:59,104 [wrapper] pilotpid: 31996
[2025-11-27 17:09:02] 2025-11-27 16:08:59,195 [wrapper] Pilot exit status: 0
[2025-11-27 17:09:02] 2025-11-27 16:08:59,599 [wrapper] pandaids: 6895355786
[2025-11-27 17:09:02] 2025-11-27 16:09:00,165 [wrapper] cleanup supervisor_pilot  6113 31997
[2025-11-27 17:09:02] 2025-11-27 16:09:00,176 [wrapper] Test setup, not cleaning
[2025-11-27 17:09:02] 2025-11-27 16:09:00,284 [wrapper] apfmon messages muted
[2025-11-27 17:09:02] 2025-11-27 16:09:00,389 [wrapper] ==== wrapper stdout END ====
[2025-11-27 17:09:02] 2025-11-27 16:09:00,499 [wrapper] ==== wrapper stderr END ====
[2025-11-27 17:09:02]  *** Error codes and diagnostics ***
[2025-11-27 17:09:02]     "exeErrorCode": 0,
[2025-11-27 17:09:02]     "exeErrorDiag": "",
[2025-11-27 17:09:02]     "pilotErrorCode": 0,
[2025-11-27 17:09:02]     "pilotErrorDiag": "",
[2025-11-27 17:09:02]  *** Listing of results directory ***
[2025-11-27 17:09:02] total 1323040
[2025-11-27 17:09:02] -rw-r--r--. 1 boinc boinc    576529 Nov 23 09:37 pilot3.tar.gz
[2025-11-27 17:09:02] -rwx------. 1 boinc boinc     36292 Nov 23 09:58 runpilot2-wrapper.sh
[2025-11-27 17:09:02] -rw-r--r--. 1 boinc boinc      5112 Nov 23 09:58 queuedata.json
[2025-11-27 17:09:02] -rw-r--r--. 1 boinc boinc       100 Nov 26 17:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 17:09:02] -rwxr-xr-x. 1 boinc boinc      7986 Nov 26 17:56 run_atlas
[2025-11-27 17:09:02] -rw-r--r--. 1 boinc boinc       105 Nov 26 17:56 job.xml
[2025-11-27 17:09:02] -rw-r--r--. 1 boinc boinc      6394 Nov 26 17:56 init_data.xml
[2025-11-27 17:09:02] -rw-r--r--. 2 boinc boinc 408113374 Nov 26 17:56 EVNT.47483658._000675.pool.root.1
[2025-11-27 17:09:02] -rw-r--r--. 2 boinc boinc     15847 Nov 26 17:56 start_atlas.sh
[2025-11-27 17:09:02] drwxrwx--x. 2 boinc boinc        68 Nov 26 17:56 shared
[2025-11-27 17:09:02] -rw-r--r--. 2 boinc boinc    590098 Nov 26 17:56 input.tar.gz
[2025-11-27 17:09:02] -rw-r--r--. 1 boinc boinc         0 Nov 26 17:56 boinc_lockfile
[2025-11-27 17:09:02] -rw-r--r--. 1 boinc boinc      2786 Nov 26 17:56 pandaJob.out
[2025-11-27 17:09:02] -rw-------. 1 boinc boinc    991545 Nov 26 17:56 agis_schedconf.cvmfs.json
[2025-11-27 17:09:02] drwx------. 5 boinc boinc      4096 Nov 26 17:56 pilot3
[2025-11-27 17:09:02] -rw-r--r--. 1 boinc boinc       533 Nov 27 16:43 boinc_task_state.xml
[2025-11-27 17:09:02] -rw-------. 1 boinc boinc 915699778 Nov 27 17:04 HITS.47556137._006704.pool.root.1
[2025-11-27 17:09:02] -rw-------. 1 boinc boinc      1029 Nov 27 17:06 memory_monitor_summary.json
[2025-11-27 17:09:02] -rw-------. 1 boinc boinc   1516240 Nov 27 17:06 agis_ddmendpoints.agis.ALL.json
[2025-11-27 17:09:02] -rw-------. 1 boinc boinc   2439289 Nov 27 17:06 log.47556137._006704.job.log.tgz.1
[2025-11-27 17:09:02] -rw-------. 1 boinc boinc        95 Nov 27 17:07 pilot_heartbeat.json
[2025-11-27 17:09:02] -rw-------. 1 boinc boinc      7259 Nov 27 17:08 heartbeat.json
[2025-11-27 17:09:02] -rw-r--r--. 1 boinc boinc      8192 Nov 27 17:08 boinc_mmap_file
[2025-11-27 17:09:02] -rw-r--r--. 1 boinc boinc        29 Nov 27 17:08 wrapper_checkpoint.txt
[2025-11-27 17:09:02] -rw-------. 1 boinc boinc      4885 Nov 27 17:08 pilotlog.txt
[2025-11-27 17:09:02] -rw-------. 1 boinc boinc  11097410 Nov 27 17:09 log.47556137._006704.job.log.1
[2025-11-27 17:09:02] -rw-------. 1 boinc boinc       353 Nov 27 17:09 output.list
[2025-11-27 17:09:02] -rw-r--r--. 1 boinc boinc       620 Nov 27 17:09 runtime_log
[2025-11-27 17:09:02] -rw-------. 1 boinc boinc  13557760 Nov 27 17:09 result.tar.gz
[2025-11-27 17:09:02] -rw-------. 1 boinc boinc       662 Nov 27 17:09 UmkMDmc6Kh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmElKKDmK0372n.diag
[2025-11-27 17:09:02] -rw-r--r--. 1 boinc boinc      8833 Nov 27 17:09 runtime_log.err
[2025-11-27 17:09:02] -rw-r--r--. 1 boinc boinc     21456 Nov 27 17:09 stderr.txt
[2025-11-27 17:09:02] HITS file was successfully produced:
[2025-11-27 17:09:02] -rw-------. 1 boinc boinc 915699778 Nov 27 17:04 shared/HITS.pool.root.1
[2025-11-27 17:09:02]  *** Contents of shared directory: ***
[2025-11-27 17:09:02] total 1306628
[2025-11-27 17:09:02] -rw-r--r--. 2 boinc boinc 408113374 Nov 26 17:56 ATLAS.root_0
[2025-11-27 17:09:02] -rw-r--r--. 2 boinc boinc     15847 Nov 26 17:56 start_atlas.sh
[2025-11-27 17:09:02] -rw-r--r--. 2 boinc boinc    590098 Nov 26 17:56 input.tar.gz
[2025-11-27 17:09:02] -rw-------. 1 boinc boinc 915699778 Nov 27 17:04 HITS.pool.root.1
[2025-11-27 17:09:02] -rw-------. 1 boinc boinc  13557760 Nov 27 17:09 result.tar.gz
17:09:04 (28259): run_atlas exited; CPU time 318278.894875
17:09:04 (28259): called boinc_finish(0)

</stderr_txt>
]]>

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