Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:03:09 (815791): wrapper (7.7.26015): starting
00:03:09 (815791): wrapper: running run_atlas (--nthreads 9)
[2025-11-24 00:03:09] Arguments: --nthreads 9
[2025-11-24 00:03:09] Threads: 9
[2025-11-24 00:03:09] Checking for CVMFS
[2025-11-24 00:03:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 00:03:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 00:03:09] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 00:03:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 00:03:10] 2.13.3.0 9890 26591 342700 153233 1 547 32880482 32935936 22830 16776704 0 161181613 99.796 84907251 34757 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-24 00:03:10] CVMFS is ok
[2025-11-24 00:03:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 00:03:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 00:03:10] Further information can be found at the LHC@home message board.
[2025-11-24 00:03:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 00:03:10] Checking for apptainer binary...
[2025-11-24 00:03:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 00:03:10] Running /usr/bin/apptainer --version
[2025-11-24 00:03:10] apptainer version 1.4.4-1.el9
[2025-11-24 00:03:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 00:03:10] c-8-36.aglt2.org
[2025-11-24 00:03:10] apptainer works
[2025-11-24 00:03:10] Set ATHENA_PROC_NUMBER=9
[2025-11-24 00:03:10] Set ATHENA_CORE_NUMBER=9
[2025-11-24 00:03:10] Starting ATLAS job with PandaID=6895355963
[2025-11-24 00:03:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 02:25:32]  *** The last 200 lines of the pilot log: ***
[2025-11-25 02:25:32] 2025-11-25 07:24:41,879 | INFO     | time since job start (94865s) is within the limit (172800.0s)
[2025-11-25 02:25:32] 2025-11-25 07:24:42,981 | INFO     | monitor loop #6146: job 0:6895355963 is in state 'finished'
[2025-11-25 02:25:32] 2025-11-25 07:24:42,981 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 02:25:32] 2025-11-25 07:24:43,942 | INFO     | time since job start (94867s) is within the limit (172800.0s)
[2025-11-25 02:25:32] 2025-11-25 07:24:45,497 | INFO     | monitor loop #6147: job 0:6895355963 is in state 'finished'
[2025-11-25 02:25:32] 2025-11-25 07:24:45,497 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 02:25:32] 2025-11-25 07:24:47,984 | INFO     | PID=825985 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-25 02:25:32] 2025-11-25 07:24:47,984 | INFO     | .. there are 42 such processes running
[2025-11-25 02:25:32] 2025-11-25 07:24:48,122 | INFO     | monitor loop #6148: job 0:6895355963 is in state 'finished'
[2025-11-25 02:25:32] 2025-11-25 07:24:48,122 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 02:25:32] 2025-11-25 07:24:48,987 | INFO     | time since job start (94872s) is within the limit (172800.0s)
[2025-11-25 02:25:32] 2025-11-25 07:24:50,651 | INFO     | monitor loop #6149: job 0:6895355963 is in state 'finished'
[2025-11-25 02:25:32] 2025-11-25 07:24:50,652 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 02:25:32] 2025-11-25 07:24:50,719 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 02:25:32] 2025-11-25 07:24:50,732 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.1890999999996
[2025-11-25 02:25:32] 2025-11-25 07:24:50,743 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6895355963/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 02:25:32] 2025-11-25 07:24:50,744 | INFO     | extracted standard info from prmon json
[2025-11-25 02:25:32] 2025-11-25 07:24:50,744 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 02:25:32] 2025-11-25 07:24:50,744 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 02:25:32] 2025-11-25 07:24:50,784 | INFO     | fitting pss+swap vs Time
[2025-11-25 02:25:32] 2025-11-25 07:24:50,787 | INFO     | sum of square deviations: 1163691475516.4092
[2025-11-25 02:25:32] 2025-11-25 07:24:50,998 | INFO     | sum of deviations: 4862910308967.988
[2025-11-25 02:25:32] 2025-11-25 07:24:50,998 | INFO     | mean x: 1764008047.6795366
[2025-11-25 02:25:32] 2025-11-25 07:24:50,998 | INFO     | mean y: 3061035.301158301
[2025-11-25 02:25:32] 2025-11-25 07:24:50,998 | INFO     | intersect: -7368491563.171368
[2025-11-25 02:25:32] 2025-11-25 07:24:51,008 | INFO     | chi2: 18.7093541834687
[2025-11-25 02:25:32] 2025-11-25 07:24:51,011 | INFO     | sum of square deviations: 1152495759531.9297
[2025-11-25 02:25:32] 2025-11-25 07:24:51,092 | INFO     | time since job start (94875s) is within the limit (172800.0s)
[2025-11-25 02:25:32] 2025-11-25 07:24:51,183 | INFO     | sum of deviations: 5445188429520.533
[2025-11-25 02:25:32] 2025-11-25 07:24:51,183 | INFO     | mean x: 1764007895.1833441
[2025-11-25 02:25:32] 2025-11-25 07:24:51,184 | INFO     | mean y: 3068964.772756617
[2025-11-25 02:25:32] 2025-11-25 07:24:51,184 | INFO     | intersect: -8331326455.767705
[2025-11-25 02:25:32] 2025-11-25 07:24:51,186 | INFO     | chi2: 15.067201815411538
[2025-11-25 02:25:32] 2025-11-25 07:24:51,186 | INFO     | current chi2=15.067201815411538 (change=19.4670127698759 %)
[2025-11-25 02:25:32] 2025-11-25 07:24:51,186 | INFO     | right removable region: 1548
[2025-11-25 02:25:32] 2025-11-25 07:24:51,196 | INFO     | sum of square deviations: 1152494641401.9297
[2025-11-25 02:25:32] 2025-11-25 07:24:51,368 | INFO     | sum of deviations: 4302125379696.072
[2025-11-25 02:25:32] 2025-11-25 07:24:51,368 | INFO     | mean x: 1764008200.1833441
[2025-11-25 02:25:32] 2025-11-25 07:24:51,368 | INFO     | mean y: 3068670.5455132346
[2025-11-25 02:25:32] 2025-11-25 07:24:51,368 | INFO     | intersect: -6581764069.994852
[2025-11-25 02:25:32] 2025-11-25 07:24:51,379 | INFO     | chi2: 15.786026711552681
[2025-11-25 02:25:32] 2025-11-25 07:24:51,379 | INFO     | current chi2=15.786026711552681 (change=15.624951258333796 %)
[2025-11-25 02:25:32] 2025-11-25 07:24:51,379 | INFO     | left removable region: 10
[2025-11-25 02:25:32] 2025-11-25 07:24:51,384 | INFO     | sum of square deviations: 1128116605629.441
[2025-11-25 02:25:32] 2025-11-25 07:24:51,563 | INFO     | sum of deviations: 4794357772859.008
[2025-11-25 02:25:32] 2025-11-25 07:24:51,563 | INFO     | mean x: 1764008169.6892068
[2025-11-25 02:25:32] 2025-11-25 07:24:51,564 | INFO     | mean y: 3080738.3075422626
[2025-11-25 02:25:32] 2025-11-25 07:24:51,564 | INFO     | intersect: -7493738506.736223
[2025-11-25 02:25:32] 2025-11-25 07:24:51,566 | INFO     | chi2: 11.23202805519879
[2025-11-25 02:25:32] 2025-11-25 07:24:51,566 | INFO     | current memory leak: 4.25 B/s (using 1538 data points, chi2=11.23)
[2025-11-25 02:25:32] 2025-11-25 07:24:51,576 | INFO     | could have reported an average CPU frequency of 2600 MHz (55 samples)
[2025-11-25 02:25:32] 2025-11-25 07:24:51,576 | INFO     | ..............................
[2025-11-25 02:25:32] 2025-11-25 07:24:51,576 | INFO     | . Timing measurements:
[2025-11-25 02:25:32] 2025-11-25 07:24:51,576 | INFO     | . get job = 0 s
[2025-11-25 02:25:32] 2025-11-25 07:24:51,576 | INFO     | . initial setup = 3 s
[2025-11-25 02:25:32] 2025-11-25 07:24:51,576 | INFO     | . payload setup = 15 s
[2025-11-25 02:25:32] 2025-11-25 07:24:51,576 | INFO     | . stage-in = 0 s
[2025-11-25 02:25:32] 2025-11-25 07:24:51,576 | INFO     | . payload execution = 94780 s
[2025-11-25 02:25:32] 2025-11-25 07:24:51,577 | INFO     | . stage-out = 8 s
[2025-11-25 02:25:32] 2025-11-25 07:24:51,577 | INFO     | . log creation = 2 s
[2025-11-25 02:25:32] 2025-11-25 07:24:51,577 | INFO     | ..............................
[2025-11-25 02:25:32] 2025-11-25 07:24:52,081 | INFO     | 
[2025-11-25 02:25:32] 2025-11-25 07:24:52,081 | INFO     | job summary report
[2025-11-25 02:25:32] 2025-11-25 07:24:52,081 | INFO     | --------------------------------------------------
[2025-11-25 02:25:32] 2025-11-25 07:24:52,081 | INFO     | PanDA job id: 6895355963
[2025-11-25 02:25:32] 2025-11-25 07:24:52,082 | INFO     | task id: 47556137
[2025-11-25 02:25:32] 2025-11-25 07:24:52,082 | INFO     | errors: (none)
[2025-11-25 02:25:32] 2025-11-25 07:24:52,082 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 02:25:32] 2025-11-25 07:24:52,082 | INFO     | pilot state: finished 
[2025-11-25 02:25:32] 2025-11-25 07:24:52,082 | INFO     | transexitcode: 0
[2025-11-25 02:25:32] 2025-11-25 07:24:52,082 | INFO     | exeerrorcode: 0
[2025-11-25 02:25:32] 2025-11-25 07:24:52,082 | INFO     | exeerrordiag: 
[2025-11-25 02:25:32] 2025-11-25 07:24:52,082 | INFO     | exitcode: 0
[2025-11-25 02:25:32] 2025-11-25 07:24:52,082 | INFO     | exitmsg: OK
[2025-11-25 02:25:32] 2025-11-25 07:24:52,083 | INFO     | cpuconsumptiontime: 304333 s
[2025-11-25 02:25:32] 2025-11-25 07:24:52,083 | INFO     | nevents: 1000
[2025-11-25 02:25:32] 2025-11-25 07:24:52,083 | INFO     | neventsw: 0
[2025-11-25 02:25:32] 2025-11-25 07:24:52,083 | INFO     | pid: 841331
[2025-11-25 02:25:32] 2025-11-25 07:24:52,083 | INFO     | pgrp: 841331
[2025-11-25 02:25:32] 2025-11-25 07:24:52,083 | INFO     | corecount: 9
[2025-11-25 02:25:32] 2025-11-25 07:24:52,083 | INFO     | event service: False
[2025-11-25 02:25:32] 2025-11-25 07:24:52,083 | INFO     | sizes: {0: 2298585, 1: 2298784, 12: 2298784, 15: 2299074, 23: 2299102, 94800: 2369381, 94808: 2379166, 94810: 2379222, 94843: 2379468}
[2025-11-25 02:25:32] 2025-11-25 07:24:52,083 | INFO     | --------------------------------------------------
[2025-11-25 02:25:32] 2025-11-25 07:24:52,083 | INFO     | 
[2025-11-25 02:25:32] 2025-11-25 07:24:52,083 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-25 02:25:32] 2025-11-25 07:24:52,205 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 02:25:32] 2025-11-25 07:24:52,206 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 02:25:32] 2025-11-25 07:24:52,206 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 02:25:32] 2025-11-25 07:24:52,206 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 02:25:32] 2025-11-25 07:24:52,206 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 02:25:32] 2025-11-25 07:24:52,206 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 02:25:32] 2025-11-25 07:24:52,206 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 02:25:32] 2025-11-25 07:24:52,206 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 02:25:32] 2025-11-25 07:24:52,206 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 02:25:32] 2025-11-25 07:24:52,206 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 02:25:32] 2025-11-25 07:24:52,206 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 02:25:32] 2025-11-25 07:24:52,206 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 02:25:32] 2025-11-25 07:24:52,207 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 02:25:32] 2025-11-25 07:24:52,207 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 02:25:32] 2025-11-25 07:24:52,207 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 02:25:32] 2025-11-25 07:24:52,207 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 02:25:32] 2025-11-25 07:24:52,207 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 02:25:32] 2025-11-25 07:24:52,207 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 02:25:32] 2025-11-25 07:24:52,207 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 02:25:32] 2025-11-25 07:24:52,207 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 02:25:32] 2025-11-25 07:24:52,207 | INFO     | job 6895355963 has completed (purged errors)
[2025-11-25 02:25:32] 2025-11-25 07:24:52,208 | INFO     | overall cleanup function is called
[2025-11-25 02:25:32] 2025-11-25 07:24:53,257 | INFO     | --- collectZombieJob: --- 10, [841331]
[2025-11-25 02:25:32] 2025-11-25 07:24:53,263 | INFO     | zombie collector waiting for pid 841331
[2025-11-25 02:25:32] 2025-11-25 07:24:53,263 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 02:25:32] 2025-11-25 07:24:53,263 | INFO     | collected zombie processes
[2025-11-25 02:25:32] 2025-11-25 07:24:53,264 | INFO     | will attempt to kill all subprocesses of pid=841331
[2025-11-25 02:25:32] 2025-11-25 07:24:56,221 | INFO     | process IDs to be killed: [841331] (in reverse order)
[2025-11-25 02:25:32] 2025-11-25 07:24:56,815 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 02:25:32] 2025-11-25 07:24:56,816 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 02:25:32] 2025-11-25 07:24:56,887 | INFO     | did not find any defunct processes belonging to 841331
[2025-11-25 02:25:32] 2025-11-25 07:24:56,967 | INFO     | did not find any defunct processes belonging to 841331
[2025-11-25 02:25:32] 2025-11-25 07:24:56,975 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 02:25:32] 2025-11-25 07:24:56,975 | INFO     | ready for new job
[2025-11-25 02:25:32] 2025-11-25 07:24:56,981 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 02:25:32] 2025-11-25 07:24:57,009 | INFO     | ***************************************
[2025-11-25 02:25:32] 2025-11-25 07:24:57,009 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 02:25:32] 2025-11-25 07:24:57,009 | INFO     | ***************************************
[2025-11-25 02:25:32] 2025-11-25 07:24:57,009 | INFO     | 
[2025-11-25 02:25:32] 2025-11-25 07:24:57,023 | INFO     | architecture information:
[2025-11-25 02:25:32] 2025-11-25 07:24:57,033 | INFO     | executing command: cat /etc/os-release
[2025-11-25 02:25:32] 2025-11-25 07:24:57,234 | INFO     | cat /etc/os-release:
[2025-11-25 02:25:32] NAME="CentOS Linux"
[2025-11-25 02:25:32] VERSION="7 (Core)"
[2025-11-25 02:25:32] ID="centos"
[2025-11-25 02:25:32] ID_LIKE="rhel fedora"
[2025-11-25 02:25:32] VERSION_ID="7"
[2025-11-25 02:25:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 02:25:32] ANSI_COLOR="0;31"
[2025-11-25 02:25:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 02:25:32] HOME_URL="https://www.centos.org/"
[2025-11-25 02:25:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 02:25:32] 
[2025-11-25 02:25:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 02:25:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 02:25:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 02:25:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 02:25:32] 
[2025-11-25 02:25:32] 2025-11-25 07:24:57,235 | INFO     | ***************************************
[2025-11-25 02:25:32] 2025-11-25 07:24:57,738 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-25 02:25:32] 2025-11-25 07:24:57,799 | INFO     | sufficient remaining disk space (70961332224 B)
[2025-11-25 02:25:32] 2025-11-25 07:24:57,799 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 02:25:32] 2025-11-25 07:24:57,799 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 02:25:32] 2025-11-25 07:24:57,799 | INFO     | update_server=False
[2025-11-25 02:25:32] 2025-11-25 07:24:57,799 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 02:25:32] 2025-11-25 07:24:57,800 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 02:25:32] 2025-11-25 07:24:57,803 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 02:25:32] 2025-11-25 07:24:57,943 | INFO     | all job control threads have been joined
[2025-11-25 02:25:32] 2025-11-25 07:24:58,042 | INFO     | all data control threads have been joined
[2025-11-25 02:25:32] 2025-11-25 07:24:58,240 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-25 02:25:32] 2025-11-25 07:24:58,240 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-25 02:25:32] 2025-11-25 07:24:58,240 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 02:25:32] 2025-11-25 07:24:58,240 | INFO     | will abort loop
[2025-11-25 02:25:32] 2025-11-25 07:24:58,469 | INFO     | all payload control threads have been joined
[2025-11-25 02:25:32] 2025-11-25 07:24:58,637 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 02:25:32] 2025-11-25 07:24:58,805 | INFO     | [job] retrieve thread has finished
[2025-11-25 02:25:32] 2025-11-25 07:24:58,818 | INFO     | [job] queue monitor thread has finished
[2025-11-25 02:25:32] 2025-11-25 07:24:58,951 | INFO     | [job] control thread has finished
[2025-11-25 02:25:32] 2025-11-25 07:24:59,048 | INFO     | [data] control thread has finished
[2025-11-25 02:25:32] 2025-11-25 07:24:59,222 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 02:25:32] 2025-11-25 07:24:59,226 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 02:25:32] 2025-11-25 07:24:59,261 | INFO     | [job] job monitor thread has finished
[2025-11-25 02:25:32] 2025-11-25 07:24:59,480 | INFO     | [payload] control thread has finished
[2025-11-25 02:25:32] 2025-11-25 07:25:00,075 | INFO     | [data] copytool_in thread has finished
[2025-11-25 02:25:32] 2025-11-25 07:25:00,135 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 02:25:32] 2025-11-25 07:25:00,231 | INFO     | [payload] failed_post thread has finished
[2025-11-25 02:25:32] 2025-11-25 07:25:00,270 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 02:25:32] 2025-11-25 07:25:00,270 | INFO     | [job] validate thread has finished
[2025-11-25 02:25:32] 2025-11-25 07:25:00,292 | INFO     | [payload] validate_post thread has finished
[2025-11-25 02:25:32] 2025-11-25 07:25:00,644 | INFO     | [data] copytool_out thread has finished
[2025-11-25 02:25:32] 2025-11-25 07:25:01,817 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 02:25:32] 2025-11-25 07:25:23,151 | INFO     | 94880s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-25 02:25:32] 2025-11-25 07:25:24,169 | INFO     | [monitor] cgroup control has ended
[2025-11-25 02:25:32] 2025-11-25 07:25:25,694 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140122224105280)>', '<ExcThread(monitor, started 140121730955008)>']
[2025-11-25 02:25:32] 2025-11-25 07:25:26,709 | INFO     | PID=825985 has CPU usage=4.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-25 02:25:32] 2025-11-25 07:25:26,709 | INFO     | .. there are 42 such processes running
[2025-11-25 02:25:32] 2025-11-25 07:25:26,710 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 02:25:32] 2025-11-25 07:25:26,710 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 02:25:32] 2025-11-25 07:25:26,713 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 02:25:32] 2025-11-25 07:25:26,713 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 02:25:32] 2025-11-25 07:25:26,713 | INFO     | [monitor] control thread has ended
[2025-11-25 02:25:32] 2025-11-25 07:25:30,720 | INFO     | all workflow threads have been joined
[2025-11-25 02:25:32] 2025-11-25 07:25:30,720 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 02:25:32] 2025-11-25 07:25:30,721 | INFO     | traces error code: 0
[2025-11-25 02:25:32] 2025-11-25 07:25:30,721 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 02:25:32] 2025-11-25 07:25:31,099 [wrapper] ==== pilot stdout END ====
[2025-11-25 02:25:32] 2025-11-25 07:25:31,108 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 02:25:32] 2025-11-25 07:25:31,123 [wrapper] pilotpid: 825985
[2025-11-25 02:25:32] 2025-11-25 07:25:31,135 [wrapper] Pilot exit status: 0
[2025-11-25 02:25:32] 2025-11-25 07:25:31,194 [wrapper] pandaids: 6895355963
[2025-11-25 02:25:32] 2025-11-25 07:25:31,373 [wrapper] cleanup supervisor_pilot 2606908 825986
[2025-11-25 02:25:32] 2025-11-25 07:25:31,396 [wrapper] Test setup, not cleaning
[2025-11-25 02:25:32] 2025-11-25 07:25:31,415 [wrapper] apfmon messages muted
[2025-11-25 02:25:32] 2025-11-25 07:25:31,442 [wrapper] ==== wrapper stdout END ====
[2025-11-25 02:25:32] 2025-11-25 07:25:31,458 [wrapper] ==== wrapper stderr END ====
[2025-11-25 02:25:32]  *** Error codes and diagnostics ***
[2025-11-25 02:25:32]     "exeErrorCode": 0,
[2025-11-25 02:25:32]     "exeErrorDiag": "",
[2025-11-25 02:25:32]     "pilotErrorCode": 0,
[2025-11-25 02:25:32]     "pilotErrorDiag": "",
[2025-11-25 02:25:32]  *** Listing of results directory ***
[2025-11-25 02:25:32] total 1331220
[2025-11-25 02:25:32] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 04:19 pilot3.tar.gz
[2025-11-25 02:25:32] -rwx------. 1 boincer umatlas     36292 Nov 23 04:33 runpilot2-wrapper.sh
[2025-11-25 02:25:32] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 04:33 queuedata.json
[2025-11-25 02:25:32] -rw-r--r--. 1 boincer umatlas       100 Nov 24 00:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 02:25:32] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 00:03 run_atlas
[2025-11-25 02:25:32] -rw-r--r--. 1 boincer umatlas       105 Nov 24 00:03 job.xml
[2025-11-25 02:25:32] -rw-r--r--. 2 boincer umatlas 410696965 Nov 24 00:03 EVNT.47483658._000680.pool.root.1
[2025-11-25 02:25:32] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 00:03 start_atlas.sh
[2025-11-25 02:25:32] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 00:03 shared
[2025-11-25 02:25:32] -rw-r--r--. 2 boincer umatlas    590099 Nov 24 00:03 input.tar.gz
[2025-11-25 02:25:32] -rw-r--r--. 1 boincer umatlas         0 Nov 24 00:03 boinc_lockfile
[2025-11-25 02:25:32] -rw-r--r--. 1 boincer umatlas      2785 Nov 24 00:03 pandaJob.out
[2025-11-25 02:25:32] -rw-------. 1 boincer umatlas        57 Nov 24 00:03 setup.sh.local
[2025-11-25 02:25:32] -rw-------. 1 boincer umatlas    989786 Nov 24 00:03 agis_schedconf.cvmfs.json
[2025-11-25 02:25:32] drwx------. 5 boincer umatlas      4096 Nov 24 00:03 pilot3
[2025-11-25 02:25:32] -rw-r--r--. 1 boincer umatlas       533 Nov 25 01:55 boinc_task_state.xml
[2025-11-25 02:25:32] -rw-r--r--. 1 boincer umatlas      6660 Nov 25 02:19 init_data.xml
[2025-11-25 02:25:32] -rw-------. 1 boincer umatlas 918074601 Nov 25 02:22 HITS.47556137._006758.pool.root.1
[2025-11-25 02:25:32] -rw-------. 1 boincer umatlas      1070 Nov 25 02:24 memory_monitor_summary.json
[2025-11-25 02:25:32] -rw-------. 1 boincer umatlas   1516227 Nov 25 02:24 agis_ddmendpoints.agis.ALL.json
[2025-11-25 02:25:32] -rw-------. 1 boincer umatlas   2714883 Nov 25 02:24 log.47556137._006758.job.log.tgz.1
[2025-11-25 02:25:32] -rw-------. 1 boincer umatlas        95 Nov 25 02:24 pilot_heartbeat.json
[2025-11-25 02:25:32] -rw-------. 1 boincer umatlas      8639 Nov 25 02:24 heartbeat.json
[2025-11-25 02:25:32] -rw-------. 1 boincer umatlas      5125 Nov 25 02:25 pilotlog.txt
[2025-11-25 02:25:32] -rw-------. 1 boincer umatlas  12526952 Nov 25 02:25 log.47556137._006758.job.log.1
[2025-11-25 02:25:32] -rw-------. 1 boincer umatlas       353 Nov 25 02:25 output.list
[2025-11-25 02:25:32] -rw-r--r--. 1 boincer umatlas       620 Nov 25 02:25 runtime_log
[2025-11-25 02:25:32] -rw-------. 1 boincer umatlas  15257600 Nov 25 02:25 result.tar.gz
[2025-11-25 02:25:32] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 02:25 boinc_mmap_file
[2025-11-25 02:25:32] -rw-r--r--. 1 boincer umatlas        29 Nov 25 02:25 wrapper_checkpoint.txt
[2025-11-25 02:25:32] -rw-r--r--. 1 boincer umatlas      9333 Nov 25 02:25 runtime_log.err
[2025-11-25 02:25:32] -rw-------. 1 boincer umatlas       662 Nov 25 02:25 NHpLDmCeLh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmAmKKDmdpx6Nm.diag
[2025-11-25 02:25:32] -rw-r--r--. 1 boincer umatlas     21841 Nov 25 02:25 stderr.txt
[2025-11-25 02:25:32] HITS file was successfully produced:
[2025-11-25 02:25:32] -rw-------. 1 boincer umatlas 918074601 Nov 25 02:22 shared/HITS.pool.root.1
[2025-11-25 02:25:32]  *** Contents of shared directory: ***
[2025-11-25 02:25:32] total 1313136
[2025-11-25 02:25:32] -rw-r--r--. 2 boincer umatlas 410696965 Nov 24 00:03 ATLAS.root_0
[2025-11-25 02:25:32] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 00:03 start_atlas.sh
[2025-11-25 02:25:32] -rw-r--r--. 2 boincer umatlas    590099 Nov 24 00:03 input.tar.gz
[2025-11-25 02:25:32] -rw-------. 1 boincer umatlas 918074601 Nov 25 02:22 HITS.pool.root.1
[2025-11-25 02:25:32] -rw-------. 1 boincer umatlas  15257600 Nov 25 02:25 result.tar.gz
02:25:34 (815791): run_atlas exited; CPU time 306671.072681
02:25:34 (815791): called boinc_finish(0)

</stderr_txt>
]]>

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