Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:51:35 (3518388): wrapper (7.7.26015): starting
20:51:35 (3518388): wrapper: running run_atlas (--nthreads 12)
[2025-11-23 20:51:35] Arguments: --nthreads 12
[2025-11-23 20:51:35] Threads: 12
[2025-11-23 20:51:35] Checking for CVMFS
[2025-11-23 20:51:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 20:51:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 20:51:36] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 20:51:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 20:51:36] 2.11.5.0 2129 93640 217668 153233 1 579 36289562 45568001 15326 130560 0 923442469 99.837 470700615 21625 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.163:3129 1
[2025-11-23 20:51:36] CVMFS is ok
[2025-11-23 20:51:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 20:51:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 20:51:36] Further information can be found at the LHC@home message board.
[2025-11-23 20:51:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 20:51:36] Checking for apptainer binary...
[2025-11-23 20:51:36] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 20:51:36] Running /usr/bin/apptainer --version
[2025-11-23 20:51:37] apptainer version 1.4.1-1.el9
[2025-11-23 20:51:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 20:51:37] wns0037.triumf.lcg
[2025-11-23 20:51:37] apptainer works
[2025-11-23 20:51:37] Set ATHENA_PROC_NUMBER=12
[2025-11-23 20:51:37] Set ATHENA_CORE_NUMBER=12
[2025-11-23 20:51:37] Starting ATLAS job with PandaID=6895366925
[2025-11-23 20:51:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 20:57:18]  *** The last 200 lines of the pilot log: ***
[2025-11-23 20:57:18] 2025-11-24 04:56:40,659 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-23 20:57:18] 2025-11-24 04:56:40,660 | WARNING  | wrong length of table data, x=[1763959987.0, 1763960048.0], y=[26817.0, 558867.0] (must be same and length>=4)
[2025-11-23 20:57:18] 2025-11-24 04:56:40,660 | INFO     | could have reported an average CPU frequency of 2509 MHz (4 samples)
[2025-11-23 20:57:18] 2025-11-24 04:56:40,661 | INFO     | ..............................
[2025-11-23 20:57:18] 2025-11-24 04:56:40,661 | INFO     | . Timing measurements:
[2025-11-23 20:57:18] 2025-11-24 04:56:40,661 | INFO     | . get job = 0 s
[2025-11-23 20:57:18] 2025-11-24 04:56:40,664 | INFO     | . initial setup = 4 s
[2025-11-23 20:57:18] 2025-11-24 04:56:40,664 | INFO     | . payload setup = 16 s
[2025-11-23 20:57:18] 2025-11-24 04:56:40,664 | INFO     | . stage-in = 0 s
[2025-11-23 20:57:18] 2025-11-24 04:56:40,664 | INFO     | . payload execution = 91 s
[2025-11-23 20:57:18] 2025-11-24 04:56:40,664 | INFO     | . stage-out = 1 s
[2025-11-23 20:57:18] 2025-11-24 04:56:40,664 | INFO     | . log creation = 0 s
[2025-11-23 20:57:18] 2025-11-24 04:56:40,664 | INFO     | ..............................
[2025-11-23 20:57:18] 2025-11-24 04:56:40,664 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-23 20:57:18] 2025-11-24 04:56:40,665 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895366925/pilotlog.txt
[2025-11-23 20:57:18] 2025-11-24 04:56:40,694 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-23 20:57:18] - Log from pilotlog.txt -
[2025-11-23 20:57:18] 2025-11-24 04:56:40,658 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6895366925/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 20:57:18] 2025-11-24 04:56:40,659 | INFO     | extracted standard info from prmon json
[2025-11-23 20:57:18] 2025-11-24 04:56:40,659 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 20:57:18] 2025-11-24 04:56:40,659 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 20:57:18] 2025-11-24 04:56:40,659 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-23 20:57:18] 2025-11-24 04:56:40,659 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-23 20:57:18] 2025-11-24 04:56:40,660 | WARNING  | wrong length of table data, x=[1763959987.0, 1763960048.0], y=[26817.0, 558867.0] (must be same and length>=4)
[2025-11-23 20:57:18] 2025-11-24 04:56:40,660 | INFO     | could have reported an average CPU frequency of 2509 MHz (4 samples)
[2025-11-23 20:57:18] 2025-11-24 04:56:40,661 | INFO     | ..............................
[2025-11-23 20:57:18] 2025-11-24 04:56:40,661 | INFO     | . Timing measurements:
[2025-11-23 20:57:18] 2025-11-24 04:56:40,661 | INFO     | . get job = 0 s
[2025-11-23 20:57:18] 2025-11-24 04:56:40,664 | INFO     | . initial setup = 4 s
[2025-11-23 20:57:18] 2025-11-24 04:56:40,664 | INFO     | . payload setup = 16 s
[2025-11-23 20:57:18] 2025-11-24 04:56:40,664 | INFO     | . stage-in = 0 s
[2025-11-23 20:57:18] 2025-11-24 04:56:40,664 | INFO     | . payload execution = 91 s
[2025-11-23 20:57:18] 2025-11-24 04:56:40,664 | INFO     | . stage-out = 1 s
[2025-11-23 20:57:18] 2025-11-24 04:56:40,664 | INFO     | . log creation = 0 s
[2025-11-23 20:57:18] 2025-11-24 04:56:40,664 | INFO     | ..............................
[2025-11-23 20:57:18] 2025-11-24 04:56:40,664 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-23 20:57:18] 2025-11-24 04:56:40,665 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895366925/pilotlog.txt
[2025-11-23 20:57:18] 2025-11-24 04:56:40,695 | WARNING  | 
[2025-11-23 20:57:18] [begin log extracts]
[2025-11-23 20:57:18] - Log from pilotlog.txt -
[2025-11-23 20:57:18] 2025-11-24 04:56:40,658 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6895366925/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 20:57:18] 2025-11-24 04:56:40,659 | INFO     | extracted standard info from prmon json
[2025-11-23 20:57:18] 2025-11-24 04:56:40,659 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 20:57:18] 2025-11-24 04:56:40,659 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 20:57:18] 2025-11-24 04:56:40,659 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-23 20:57:18] 2025-11-24 04:56:40,659 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-23 20:57:18] 2025-11-24 04:56:40,660 | WARNING  | wrong length of table data, x=[1763959987.0, 1763960048.0], y=[26817.0, 558867.0] (must be same and length>=4)
[2025-11-23 20:57:18] 2025-11-24 04:56:40,660 | INFO     | could have reported an average CPU frequency of 2509 MHz (4 samples)
[2025-11-23 20:57:18] 2025-11-24 04:56:40,661 | INFO     | ..............................
[2025-11-23 20:57:18] 2025-11-24 04:56:40,661 | INFO     | . Timing measurements:
[2025-11-23 20:57:18] 2025-11-24 04:56:40,661 | INFO     | . get job = 0 s
[2025-11-23 20:57:18] 2025-11-24 04:56:40,664 | INFO     | . initial setup = 4 s
[2025-11-23 20:57:18] 2025-11-24 04:56:40,664 | INFO     | . payload setup = 16 s
[2025-11-23 20:57:18] 2025-11-24 04:56:40,664 | INFO     | . stage-in = 0 s
[2025-11-23 20:57:18] 2025-11-24 04:56:40,664 | INFO     | . payload execution = 91 s
[2025-11-23 20:57:18] 2025-11-24 04:56:40,664 | INFO     | . stage-out = 1 s
[2025-11-23 20:57:18] 2025-11-24 04:56:40,664 | INFO     | . log creation = 0 s
[2025-11-23 20:57:18] 2025-11-24 04:56:40,664 | INFO     | ..............................
[2025-11-23 20:57:18] 2025-11-24 04:56:40,664 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-23 20:57:18] 2025-11-24 04:56:40,665 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895366925/pilotlog.txt
[2025-11-23 20:57:18] [end log extracts]
[2025-11-23 20:57:18] 2025-11-24 04:56:40,695 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-23 20:57:18] 2025-11-24 04:56:40,695 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-23 20:57:18] 2025-11-24 04:56:40,815 | INFO     | 
[2025-11-23 20:57:18] 2025-11-24 04:56:40,816 | INFO     | job summary report
[2025-11-23 20:57:18] 2025-11-24 04:56:40,816 | INFO     | --------------------------------------------------
[2025-11-23 20:57:18] 2025-11-24 04:56:40,816 | INFO     | PanDA job id: 6895366925
[2025-11-23 20:57:18] 2025-11-24 04:56:40,816 | INFO     | task id: 47556137
[2025-11-23 20:57:18] 2025-11-24 04:56:40,816 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-23 20:54:17,833 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-23 20:57:18] 2025-11-24 04:56:40,816 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-23 20:57:18] 2025-11-24 04:56:40,816 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 20:57:18] 2025-11-24 04:56:40,816 | INFO     | pilot state: failed 
[2025-11-23 20:57:18] 2025-11-24 04:56:40,816 | INFO     | transexitcode: 65
[2025-11-23 20:57:18] 2025-11-24 04:56:40,816 | INFO     | exeerrorcode: 65
[2025-11-23 20:57:18] 2025-11-24 04:56:40,816 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-23 20:57:18] 2025-11-24 04:56:40,816 | INFO     | exitcode: 65
[2025-11-23 20:57:18] 2025-11-24 04:56:40,816 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-23 20:57:18] 2025-11-24 04:56:40,816 | INFO     | cpuconsumptiontime: 42 s
[2025-11-23 20:57:18] 2025-11-24 04:56:40,816 | INFO     | nevents: 0
[2025-11-23 20:57:18] 2025-11-24 04:56:40,816 | INFO     | neventsw: 0
[2025-11-23 20:57:18] 2025-11-24 04:56:40,816 | INFO     | pid: 3528697
[2025-11-23 20:57:18] 2025-11-24 04:56:40,816 | INFO     | pgrp: 3528697
[2025-11-23 20:57:18] 2025-11-24 04:56:40,816 | INFO     | corecount: 12
[2025-11-23 20:57:18] 2025-11-24 04:56:40,816 | INFO     | event service: False
[2025-11-23 20:57:18] 2025-11-24 04:56:40,817 | INFO     | sizes: {0: 2298804, 1: 2298804, 11: 2299094, 12: 2299122, 112: 2324575, 114: 2329021, 246: 2329159}
[2025-11-23 20:57:18] 2025-11-24 04:56:40,817 | INFO     | --------------------------------------------------
[2025-11-23 20:57:18] 2025-11-24 04:56:40,817 | INFO     | 
[2025-11-23 20:57:18] 2025-11-24 04:56:40,817 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-23 20:57:18] 2025-11-24 04:56:41,087 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 20:57:18] 2025-11-24 04:56:41,087 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 20:57:18] 2025-11-24 04:56:41,088 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 20:57:18] 2025-11-24 04:56:41,088 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 20:57:18] 2025-11-24 04:56:41,088 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 20:57:18] 2025-11-24 04:56:41,088 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 20:57:18] 2025-11-24 04:56:41,088 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 20:57:18] 2025-11-24 04:56:41,088 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 20:57:18] 2025-11-24 04:56:41,088 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 20:57:18] 2025-11-24 04:56:41,088 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 20:57:18] 2025-11-24 04:56:41,088 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 20:57:18] 2025-11-24 04:56:41,088 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 20:57:18] 2025-11-24 04:56:41,088 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 20:57:18] 2025-11-24 04:56:41,088 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 20:57:18] 2025-11-24 04:56:41,088 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 20:57:18] 2025-11-24 04:56:41,088 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 20:57:18] 2025-11-24 04:56:41,088 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 20:57:18] 2025-11-24 04:56:41,088 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 20:57:18] 2025-11-24 04:56:41,088 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 20:57:18] 2025-11-24 04:56:41,088 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 20:57:18] 2025-11-24 04:56:41,089 | INFO     | job 6895366925 has completed (purged errors)
[2025-11-23 20:57:18] 2025-11-24 04:56:41,089 | INFO     | overall cleanup function is called
[2025-11-23 20:57:18] 2025-11-24 04:56:42,096 | INFO     | --- collectZombieJob: --- 10, [3528697]
[2025-11-23 20:57:18] 2025-11-24 04:56:42,096 | INFO     | zombie collector waiting for pid 3528697
[2025-11-23 20:57:18] 2025-11-24 04:56:42,096 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 20:57:18] 2025-11-24 04:56:42,096 | INFO     | collected zombie processes
[2025-11-23 20:57:18] 2025-11-24 04:56:42,096 | INFO     | will attempt to kill all subprocesses of pid=3528697
[2025-11-23 20:57:18] 2025-11-24 04:56:42,253 | INFO     | process IDs to be killed: [3528697] (in reverse order)
[2025-11-23 20:57:18] 2025-11-24 04:56:42,319 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 20:57:18] 2025-11-24 04:56:42,320 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 20:57:18] 2025-11-24 04:56:42,334 | INFO     | did not find any defunct processes belonging to 3528697
[2025-11-23 20:57:18] 2025-11-24 04:56:42,341 | INFO     | did not find any defunct processes belonging to 3528697
[2025-11-23 20:57:18] 2025-11-24 04:56:42,341 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 20:57:18] 2025-11-24 04:56:42,342 | INFO     | ready for new job
[2025-11-23 20:57:18] 2025-11-24 04:56:42,342 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 20:57:18] 2025-11-24 04:56:42,343 | INFO     | ***************************************
[2025-11-23 20:57:18] 2025-11-24 04:56:42,343 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 20:57:18] 2025-11-24 04:56:42,343 | INFO     | ***************************************
[2025-11-23 20:57:18] 2025-11-24 04:56:42,343 | INFO     | 
[2025-11-23 20:57:18] 2025-11-24 04:56:42,345 | INFO     | architecture information:
[2025-11-23 20:57:18] 2025-11-24 04:56:42,345 | INFO     | executing command: cat /etc/os-release
[2025-11-23 20:57:18] 2025-11-24 04:56:42,371 | INFO     | cat /etc/os-release:
[2025-11-23 20:57:18] NAME="CentOS Linux"
[2025-11-23 20:57:18] VERSION="7 (Core)"
[2025-11-23 20:57:18] ID="centos"
[2025-11-23 20:57:18] ID_LIKE="rhel fedora"
[2025-11-23 20:57:18] VERSION_ID="7"
[2025-11-23 20:57:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 20:57:18] ANSI_COLOR="0;31"
[2025-11-23 20:57:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 20:57:18] HOME_URL="https://www.centos.org/"
[2025-11-23 20:57:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 20:57:18] 
[2025-11-23 20:57:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 20:57:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 20:57:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 20:57:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 20:57:18] 
[2025-11-23 20:57:18] 2025-11-24 04:56:42,371 | INFO     | ***************************************
[2025-11-23 20:57:18] 2025-11-24 04:56:42,875 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-23 20:57:18] 2025-11-24 04:56:42,925 | INFO     | sufficient remaining disk space (1676346916864 B)
[2025-11-23 20:57:18] 2025-11-24 04:56:42,926 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 20:57:18] 2025-11-24 04:56:42,926 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 20:57:18] 2025-11-24 04:56:42,926 | INFO     | update_server=False
[2025-11-23 20:57:18] 2025-11-24 04:56:42,926 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 20:57:18] 2025-11-24 04:56:42,927 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 20:57:18] 2025-11-24 04:56:43,186 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 20:57:18] 2025-11-24 04:56:43,186 | INFO     | aborting loop
[2025-11-23 20:57:18] 2025-11-24 04:56:43,188 | INFO     | all data control threads have been joined
[2025-11-23 20:57:18] 2025-11-24 04:56:43,295 | INFO     | all job control threads have been joined
[2025-11-23 20:57:18] 2025-11-24 04:56:43,798 | INFO     | all payload control threads have been joined
[2025-11-23 20:57:18] 2025-11-24 04:56:43,932 | INFO     | [job] retrieve thread has finished
[2025-11-23 20:57:18] 2025-11-24 04:56:44,128 | INFO     | [payload] validate_post thread has finished
[2025-11-23 20:57:18] 2025-11-24 04:56:44,154 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 20:57:18] 2025-11-24 04:56:44,192 | INFO     | [job] job monitor thread has finished
[2025-11-23 20:57:18] 2025-11-24 04:56:44,194 | INFO     | [data] control thread has finished
[2025-11-23 20:57:18] 2025-11-24 04:56:44,302 | INFO     | [job] control thread has finished
[2025-11-23 20:57:18] 2025-11-24 04:56:44,314 | INFO     | [job] validate thread has finished
[2025-11-23 20:57:18] 2025-11-24 04:56:44,657 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 20:57:18] 2025-11-24 04:56:44,657 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 20:57:18] 2025-11-24 04:56:44,804 | INFO     | [payload] control thread has finished
[2025-11-23 20:57:18] 2025-11-24 04:56:44,822 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 20:57:18] 2025-11-24 04:56:44,903 | INFO     | [data] copytool_in thread has finished
[2025-11-23 20:57:18] 2025-11-24 04:56:44,934 | INFO     | [data] copytool_out thread has finished
[2025-11-23 20:57:18] 2025-11-24 04:56:45,101 | INFO     | [payload] failed_post thread has finished
[2025-11-23 20:57:18] 2025-11-24 04:56:45,830 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 20:57:18] 2025-11-24 04:56:46,152 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 20:57:18] 2025-11-24 04:56:46,836 | INFO     | [job] queue monitor thread has finished
[2025-11-23 20:57:18] 2025-11-24 04:56:50,161 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 20:57:18] 2025-11-24 04:57:11,481 | INFO     | [monitor] cgroup control has ended
[2025-11-23 20:57:18] 2025-11-24 04:57:12,205 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140056527075136)>', '<ExcThread(monitor, started 140055821657856)>']
[2025-11-23 20:57:18] 2025-11-24 04:57:13,644 | INFO     | PID=3522094 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-23 20:57:18] 2025-11-24 04:57:13,644 | INFO     | .. there are 21 such processes running
[2025-11-23 20:57:18] 2025-11-24 04:57:13,644 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 20:57:18] 2025-11-24 04:57:13,645 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 20:57:18] 2025-11-24 04:57:13,645 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 20:57:18] 2025-11-24 04:57:13,645 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 20:57:18] 2025-11-24 04:57:13,645 | INFO     | [monitor] control thread has ended
[2025-11-23 20:57:18] 2025-11-24 04:57:17,231 | INFO     | all workflow threads have been joined
[2025-11-23 20:57:18] 2025-11-24 04:57:17,231 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 20:57:18] 2025-11-24 04:57:17,231 | INFO     | traces error code: 0
[2025-11-23 20:57:18] 2025-11-24 04:57:17,231 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 20:57:18] 2025-11-24 04:57:17,793 [wrapper] ==== pilot stdout END ====
[2025-11-23 20:57:18] 2025-11-24 04:57:17,823 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 20:57:18] 2025-11-24 04:57:17,873 [wrapper] pilotpid: 3522094
[2025-11-23 20:57:18] 2025-11-24 04:57:17,914 [wrapper] Pilot exit status: 0
[2025-11-23 20:57:18] 2025-11-24 04:57:18,224 [wrapper] pandaids: 6895366925
[2025-11-23 20:57:18] 2025-11-24 04:57:18,535 [wrapper] cleanup supervisor_pilot 3522100 3522095
[2025-11-23 20:57:18] 2025-11-24 04:57:18,538 [wrapper] Test setup, not cleaning
[2025-11-23 20:57:18] 2025-11-24 04:57:18,540 [wrapper] apfmon messages muted
[2025-11-23 20:57:18] 2025-11-24 04:57:18,542 [wrapper] ==== wrapper stdout END ====
[2025-11-23 20:57:18] 2025-11-24 04:57:18,544 [wrapper] ==== wrapper stderr END ====
[2025-11-23 20:57:18]  *** Error codes and diagnostics ***
[2025-11-23 20:57:18]     "exeErrorCode": 65,
[2025-11-23 20:57:18]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-23 20:57:18]     "pilotErrorCode": 1305,
[2025-11-23 20:57:18]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-23 20:57:18]  *** Listing of results directory ***
[2025-11-23 20:57:18] total 405000
[2025-11-23 20:57:18] -rw-r--r--. 1 boinc boinc    576529 Nov 23 10:33 pilot3.tar.gz
[2025-11-23 20:57:18] -rw-r--r--. 1 boinc boinc      5112 Nov 23 10:49 queuedata.json
[2025-11-23 20:57:18] -rwx------. 1 boinc boinc     36292 Nov 23 10:49 runpilot2-wrapper.sh
[2025-11-23 20:57:18] -rw-r--r--. 1 boinc boinc       100 Nov 23 20:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 20:57:18] -rwxr-xr-x. 1 boinc boinc      7986 Nov 23 20:51 run_atlas
[2025-11-23 20:57:18] -rw-r--r--. 1 boinc boinc       105 Nov 23 20:51 job.xml
[2025-11-23 20:57:18] -rw-r--r--. 1 boinc boinc      6595 Nov 23 20:51 init_data.xml
[2025-11-23 20:57:18] -rw-r--r--. 2 boinc boinc 410496090 Nov 23 20:51 EVNT.47483658._000850.pool.root.1
[2025-11-23 20:57:18] -rw-r--r--. 2 boinc boinc     15847 Nov 23 20:51 start_atlas.sh
[2025-11-23 20:57:18] drwxrwx--x. 2 boinc boinc      4096 Nov 23 20:51 shared
[2025-11-23 20:57:18] -rw-r--r--. 2 boinc boinc    590109 Nov 23 20:51 input.tar.gz
[2025-11-23 20:57:18] -rw-r--r--. 1 boinc boinc         0 Nov 23 20:51 boinc_lockfile
[2025-11-23 20:57:18] -rw-r--r--. 1 boinc boinc      2786 Nov 23 20:51 pandaJob.out
[2025-11-23 20:57:18] -rw-------. 1 boinc boinc    989786 Nov 23 20:52 agis_schedconf.cvmfs.json
[2025-11-23 20:57:18] -rw-------. 1 boinc boinc   1526164 Nov 23 20:52 agis_ddmendpoints.agis.ALL.json
[2025-11-23 20:57:18] drwx------. 5 boinc boinc      4096 Nov 23 20:52 pilot3
[2025-11-23 20:57:18] -rw-r--r--. 1 boinc boinc       525 Nov 23 20:54 boinc_task_state.xml
[2025-11-23 20:57:18] -rw-------. 1 boinc boinc       993 Nov 23 20:54 memory_monitor_summary.json
[2025-11-23 20:57:18] -rw-------. 1 boinc boinc     49537 Nov 23 20:54 log.47556137._008368.job.log.tgz.1
[2025-11-23 20:57:18] -rw-------. 1 boinc boinc        95 Nov 23 20:56 pilot_heartbeat.json
[2025-11-23 20:57:18] -rw-------. 1 boinc boinc     10341 Nov 23 20:56 heartbeat.json
[2025-11-23 20:57:18] -rw-r--r--. 1 boinc boinc      8192 Nov 23 20:57 boinc_mmap_file
[2025-11-23 20:57:18] -rw-r--r--. 1 boinc boinc        23 Nov 23 20:57 wrapper_checkpoint.txt
[2025-11-23 20:57:18] -rw-------. 1 boinc boinc      4823 Nov 23 20:57 pilotlog.txt
[2025-11-23 20:57:18] -rw-------. 1 boinc boinc    100362 Nov 23 20:57 log.47556137._008368.job.log.1
[2025-11-23 20:57:18] -rw-------. 1 boinc boinc       186 Nov 23 20:57 output.list
[2025-11-23 20:57:18] -rw-r--r--. 1 boinc boinc       620 Nov 23 20:57 runtime_log
[2025-11-23 20:57:18] -rw-------. 1 boinc boinc    174080 Nov 23 20:57 result.tar.gz
[2025-11-23 20:57:18] -rw-r--r--. 1 boinc boinc      8636 Nov 23 20:57 runtime_log.err
[2025-11-23 20:57:18] -rw-------. 1 boinc boinc       645 Nov 23 20:57 kwsMDmpKUh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmugIKDmVNlNSo.diag
[2025-11-23 20:57:18] -rw-r--r--. 1 boinc boinc     22471 Nov 23 20:57 stderr.txt
[2025-11-23 20:57:18] No HITS result produced
[2025-11-23 20:57:18]  *** Contents of shared directory: ***
[2025-11-23 20:57:18] total 401648
[2025-11-23 20:57:18] -rw-r--r--. 2 boinc boinc 410496090 Nov 23 20:51 ATLAS.root_0
[2025-11-23 20:57:18] -rw-r--r--. 2 boinc boinc     15847 Nov 23 20:51 start_atlas.sh
[2025-11-23 20:57:18] -rw-r--r--. 2 boinc boinc    590109 Nov 23 20:51 input.tar.gz
[2025-11-23 20:57:18] -rw-------. 1 boinc boinc    174080 Nov 23 20:57 result.tar.gz
20:57:20 (3518388): run_atlas exited; CPU time 45.318145
20:57:20 (3518388): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN