Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:00:59 (416159): wrapper (7.7.26015): starting
00:00:59 (416159): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 00:00:59] Arguments: --nthreads 8
[2025-11-24 00:00:59] Threads: 8
[2025-11-24 00:00:59] Checking for CVMFS
[2025-11-24 00:00:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 00:00:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 00:00:59] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 00:01:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 00:01:00] 2.13.3.0 7489 26722 372912 153233 0 404 22856618 32935937 19066 16776704 0 179310501 99.653 164659717 40932 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-24 00:01:00] CVMFS is ok
[2025-11-24 00:01:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 00:01:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 00:01:00] Further information can be found at the LHC@home message board.
[2025-11-24 00:01:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 00:01:00] Checking for apptainer binary...
[2025-11-24 00:01:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 00:01:00] Running /usr/bin/apptainer --version
[2025-11-24 00:01:00] apptainer version 1.4.4-1.el9
[2025-11-24 00:01:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 00:01:00] c7-13-32.aglt2.org
[2025-11-24 00:01:00] apptainer works
[2025-11-24 00:01:00] Set ATHENA_PROC_NUMBER=8
[2025-11-24 00:01:00] Set ATHENA_CORE_NUMBER=8
[2025-11-24 00:01:00] Starting ATLAS job with PandaID=6895350284
[2025-11-24 00:01:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 20:03:54]  *** The last 200 lines of the pilot log: ***
[2025-11-24 20:03:54] 2025-11-25 01:03:05,822 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 20:03:54] 2025-11-25 01:03:06,758 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-24 20:03:54] 2025-11-25 01:03:06,766 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3292.1530468749997
[2025-11-24 20:03:54] 2025-11-25 01:03:06,805 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6895350284/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 20:03:54] 2025-11-25 01:03:06,805 | INFO     | extracted standard info from prmon json
[2025-11-24 20:03:54] 2025-11-25 01:03:06,806 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 20:03:54] 2025-11-25 01:03:06,806 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 20:03:54] 2025-11-25 01:03:06,821 | INFO     | fitting pss+swap vs Time
[2025-11-24 20:03:54] 2025-11-25 01:03:06,823 | INFO     | sum of square deviations: 510723947354.888
[2025-11-24 20:03:54] 2025-11-25 01:03:06,849 | INFO     | sum of deviations: 4202922002547.516
[2025-11-24 20:03:54] 2025-11-25 01:03:06,850 | INFO     | mean x: 1763996543.6655376
[2025-11-24 20:03:54] 2025-11-25 01:03:06,850 | INFO     | mean y: 2915506.135478408
[2025-11-24 20:03:54] 2025-11-25 01:03:06,850 | INFO     | intersect: -14513615242.398064
[2025-11-24 20:03:54] 2025-11-25 01:03:06,851 | INFO     | chi2: 5.610617263451838
[2025-11-24 20:03:54] 2025-11-25 01:03:06,852 | INFO     | sum of square deviations: 504264953779.21063
[2025-11-24 20:03:54] 2025-11-25 01:03:06,875 | INFO     | sum of deviations: 4574018091054.677
[2025-11-24 20:03:54] 2025-11-25 01:03:06,875 | INFO     | mean x: 1763996391.1768708
[2025-11-24 20:03:54] 2025-11-25 01:03:06,876 | INFO     | mean y: 2924265.5544217685
[2025-11-24 20:03:54] 2025-11-25 01:03:06,876 | INFO     | intersect: -15997694745.004332
[2025-11-24 20:03:54] 2025-11-25 01:03:06,877 | INFO     | chi2: 2.749079599510736
[2025-11-24 20:03:54] 2025-11-25 01:03:06,877 | INFO     | current chi2=2.749079599510736 (change=51.002189769412084 %)
[2025-11-24 20:03:54] 2025-11-25 01:03:06,878 | INFO     | sum of square deviations: 497860587293.61035
[2025-11-24 20:03:54] 2025-11-25 01:03:06,901 | INFO     | sum of deviations: 4569458201640.304
[2025-11-24 20:03:54] 2025-11-25 01:03:06,902 | INFO     | mean x: 1763996238.6874466
[2025-11-24 20:03:54] 2025-11-25 01:03:06,902 | INFO     | mean y: 2924154.727583262
[2025-11-24 20:03:54] 2025-11-25 01:03:06,902 | INFO     | intersect: -16187365428.848877
[2025-11-24 20:03:54] 2025-11-25 01:03:06,903 | INFO     | chi2: 2.683660147627765
[2025-11-24 20:03:54] 2025-11-25 01:03:06,903 | INFO     | current chi2=2.683660147627765 (change=2.379685618947313 %)
[2025-11-24 20:03:54] 2025-11-25 01:03:06,903 | INFO     | right removable region: 1170
[2025-11-24 20:03:54] 2025-11-25 01:03:06,904 | INFO     | sum of square deviations: 504263105300.56433
[2025-11-24 20:03:54] 2025-11-25 01:03:06,929 | INFO     | sum of deviations: 3860103052114.7817
[2025-11-24 20:03:54] 2025-11-25 01:03:06,929 | INFO     | mean x: 1763996696.1760204
[2025-11-24 20:03:54] 2025-11-25 01:03:06,929 | INFO     | mean y: 2923590.595238095
[2025-11-24 20:03:54] 2025-11-25 01:03:06,929 | INFO     | intersect: -13500362609.117592
[2025-11-24 20:03:54] 2025-11-25 01:03:06,930 | INFO     | chi2: 3.281688631186915
[2025-11-24 20:03:54] 2025-11-25 01:03:06,930 | INFO     | current chi2=3.281688631186915 (change=41.509312129269865 %)
[2025-11-24 20:03:54] 2025-11-25 01:03:06,931 | INFO     | sum of square deviations: 497858398429.1021
[2025-11-24 20:03:54] 2025-11-25 01:03:06,965 | INFO     | sum of deviations: 3746718565333.0894
[2025-11-24 20:03:54] 2025-11-25 01:03:06,967 | INFO     | mean x: 1763996848.6695132
[2025-11-24 20:03:54] 2025-11-25 01:03:06,967 | INFO     | mean y: 2926289.9743808713
[2025-11-24 20:03:54] 2025-11-25 01:03:06,967 | INFO     | intersect: -13272333830.078245
[2025-11-24 20:03:54] 2025-11-25 01:03:06,968 | INFO     | chi2: 3.1958796153965556
[2025-11-24 20:03:54] 2025-11-25 01:03:06,968 | INFO     | current chi2=3.1958796153965556 (change=2.6147823707249227 %)
[2025-11-24 20:03:54] 2025-11-25 01:03:06,968 | INFO     | left removable region: 20
[2025-11-24 20:03:54] 2025-11-25 01:03:06,969 | INFO     | sum of square deviations: 471550698682.05316
[2025-11-24 20:03:54] 2025-11-25 01:03:06,995 | INFO     | sum of deviations: 3922085172375.8945
[2025-11-24 20:03:54] 2025-11-25 01:03:06,995 | INFO     | mean x: 1763996818.1886957
[2025-11-24 20:03:54] 2025-11-25 01:03:06,995 | INFO     | mean y: 2939404.6686956524
[2025-11-24 20:03:54] 2025-11-25 01:03:06,995 | INFO     | intersect: -14668962861.77461
[2025-11-24 20:03:54] 2025-11-25 01:03:06,996 | INFO     | chi2: 0.1782347848142287
[2025-11-24 20:03:54] 2025-11-25 01:03:06,997 | INFO     | current memory leak: 8.32 B/s (using 1150 data points, chi2=0.18)
[2025-11-24 20:03:54] 2025-11-25 01:03:06,997 | INFO     | could have reported an average CPU frequency of 3290 MHz (43 samples)
[2025-11-24 20:03:54] 2025-11-25 01:03:06,998 | INFO     | ..............................
[2025-11-24 20:03:54] 2025-11-25 01:03:06,998 | INFO     | . Timing measurements:
[2025-11-24 20:03:54] 2025-11-25 01:03:06,998 | INFO     | . get job = 0 s
[2025-11-24 20:03:54] 2025-11-25 01:03:06,998 | INFO     | . initial setup = 3 s
[2025-11-24 20:03:54] 2025-11-25 01:03:06,998 | INFO     | . payload setup = 13 s
[2025-11-24 20:03:54] 2025-11-25 01:03:06,998 | INFO     | . stage-in = 0 s
[2025-11-24 20:03:54] 2025-11-25 01:03:06,998 | INFO     | . payload execution = 72027 s
[2025-11-24 20:03:54] 2025-11-25 01:03:06,998 | INFO     | . stage-out = 3 s
[2025-11-24 20:03:54] 2025-11-25 01:03:06,998 | INFO     | . log creation = 0 s
[2025-11-24 20:03:54] 2025-11-25 01:03:06,998 | INFO     | ..............................
[2025-11-24 20:03:54] 2025-11-25 01:03:07,076 | INFO     | 
[2025-11-24 20:03:54] 2025-11-25 01:03:07,077 | INFO     | job summary report
[2025-11-24 20:03:54] 2025-11-25 01:03:07,077 | INFO     | --------------------------------------------------
[2025-11-24 20:03:54] 2025-11-25 01:03:07,077 | INFO     | PanDA job id: 6895350284
[2025-11-24 20:03:54] 2025-11-25 01:03:07,077 | INFO     | task id: 47556137
[2025-11-24 20:03:54] 2025-11-25 01:03:07,077 | INFO     | errors: (none)
[2025-11-24 20:03:54] 2025-11-25 01:03:07,077 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 20:03:54] 2025-11-25 01:03:07,077 | INFO     | pilot state: finished 
[2025-11-24 20:03:54] 2025-11-25 01:03:07,077 | INFO     | transexitcode: 0
[2025-11-24 20:03:54] 2025-11-25 01:03:07,077 | INFO     | exeerrorcode: 0
[2025-11-24 20:03:54] 2025-11-25 01:03:07,077 | INFO     | exeerrordiag: 
[2025-11-24 20:03:54] 2025-11-25 01:03:07,077 | INFO     | exitcode: 0
[2025-11-24 20:03:54] 2025-11-25 01:03:07,077 | INFO     | exitmsg: OK
[2025-11-24 20:03:54] 2025-11-25 01:03:07,077 | INFO     | cpuconsumptiontime: 194109 s
[2025-11-24 20:03:54] 2025-11-25 01:03:07,078 | INFO     | nevents: 1000
[2025-11-24 20:03:54] 2025-11-25 01:03:07,078 | INFO     | neventsw: 0
[2025-11-24 20:03:54] 2025-11-25 01:03:07,078 | INFO     | pid: 455481
[2025-11-24 20:03:54] 2025-11-25 01:03:07,078 | INFO     | pgrp: 455481
[2025-11-24 20:03:54] 2025-11-25 01:03:07,078 | INFO     | corecount: 8
[2025-11-24 20:03:54] 2025-11-25 01:03:07,078 | INFO     | event service: False
[2025-11-24 20:03:54] 2025-11-25 01:03:07,078 | INFO     | sizes: {0: 2298756, 11: 2298756, 14: 2299046, 22: 2299074, 72044: 2357660, 72048: 2367445, 72049: 2367629, 72058: 2367903}
[2025-11-24 20:03:54] 2025-11-25 01:03:07,078 | INFO     | --------------------------------------------------
[2025-11-24 20:03:54] 2025-11-25 01:03:07,078 | INFO     | 
[2025-11-24 20:03:54] 2025-11-25 01:03:07,078 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-11-24 20:03:54] 2025-11-25 01:03:07,110 | INFO     | time since job start (72090s) is within the limit (172800.0s)
[2025-11-24 20:03:54] 2025-11-25 01:03:07,142 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 20:03:54] 2025-11-25 01:03:07,143 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 20:03:54] 2025-11-25 01:03:07,143 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 20:03:54] 2025-11-25 01:03:07,143 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 20:03:54] 2025-11-25 01:03:07,143 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 20:03:54] 2025-11-25 01:03:07,143 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 20:03:54] 2025-11-25 01:03:07,143 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 20:03:54] 2025-11-25 01:03:07,143 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 20:03:54] 2025-11-25 01:03:07,143 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 20:03:54] 2025-11-25 01:03:07,143 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 20:03:54] 2025-11-25 01:03:07,143 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 20:03:54] 2025-11-25 01:03:07,143 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 20:03:54] 2025-11-25 01:03:07,143 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 20:03:54] 2025-11-25 01:03:07,144 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 20:03:54] 2025-11-25 01:03:07,144 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 20:03:54] 2025-11-25 01:03:07,144 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 20:03:54] 2025-11-25 01:03:07,144 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 20:03:54] 2025-11-25 01:03:07,144 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 20:03:54] 2025-11-25 01:03:07,144 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 20:03:54] 2025-11-25 01:03:07,144 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 20:03:54] 2025-11-25 01:03:07,144 | INFO     | job 6895350284 has completed (purged errors)
[2025-11-24 20:03:54] 2025-11-25 01:03:07,144 | INFO     | overall cleanup function is called
[2025-11-24 20:03:54] 2025-11-25 01:03:08,163 | INFO     | --- collectZombieJob: --- 10, [455481]
[2025-11-24 20:03:54] 2025-11-25 01:03:08,163 | INFO     | zombie collector waiting for pid 455481
[2025-11-24 20:03:54] 2025-11-25 01:03:08,163 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 20:03:54] 2025-11-25 01:03:08,163 | INFO     | collected zombie processes
[2025-11-24 20:03:54] 2025-11-25 01:03:08,163 | INFO     | will attempt to kill all subprocesses of pid=455481
[2025-11-24 20:03:54] 2025-11-25 01:03:08,552 | INFO     | process IDs to be killed: [455481] (in reverse order)
[2025-11-24 20:03:54] 2025-11-25 01:03:08,706 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 20:03:54] 2025-11-25 01:03:08,707 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 20:03:54] 2025-11-25 01:03:08,724 | INFO     | did not find any defunct processes belonging to 455481
[2025-11-24 20:03:54] 2025-11-25 01:03:08,741 | INFO     | did not find any defunct processes belonging to 455481
[2025-11-24 20:03:54] 2025-11-25 01:03:08,742 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 20:03:54] 2025-11-25 01:03:08,743 | INFO     | ready for new job
[2025-11-24 20:03:54] 2025-11-25 01:03:08,743 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 20:03:54] 2025-11-25 01:03:08,749 | INFO     | ***************************************
[2025-11-24 20:03:54] 2025-11-25 01:03:08,751 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 20:03:54] 2025-11-25 01:03:08,751 | INFO     | ***************************************
[2025-11-24 20:03:54] 2025-11-25 01:03:08,751 | INFO     | 
[2025-11-24 20:03:54] 2025-11-25 01:03:08,755 | INFO     | architecture information:
[2025-11-24 20:03:54] 2025-11-25 01:03:08,755 | INFO     | executing command: cat /etc/os-release
[2025-11-24 20:03:54] 2025-11-25 01:03:08,774 | INFO     | cat /etc/os-release:
[2025-11-24 20:03:54] NAME="CentOS Linux"
[2025-11-24 20:03:54] VERSION="7 (Core)"
[2025-11-24 20:03:54] ID="centos"
[2025-11-24 20:03:54] ID_LIKE="rhel fedora"
[2025-11-24 20:03:54] VERSION_ID="7"
[2025-11-24 20:03:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 20:03:54] ANSI_COLOR="0;31"
[2025-11-24 20:03:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 20:03:54] HOME_URL="https://www.centos.org/"
[2025-11-24 20:03:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 20:03:54] 
[2025-11-24 20:03:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 20:03:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 20:03:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 20:03:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 20:03:54] 
[2025-11-24 20:03:54] 2025-11-25 01:03:08,774 | INFO     | ***************************************
[2025-11-24 20:03:54] 2025-11-25 01:03:09,276 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-11-24 20:03:54] 2025-11-25 01:03:09,301 | INFO     | sufficient remaining disk space (91459944448 B)
[2025-11-24 20:03:54] 2025-11-25 01:03:09,301 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 20:03:54] 2025-11-25 01:03:09,301 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 20:03:54] 2025-11-25 01:03:09,301 | INFO     | update_server=False
[2025-11-24 20:03:54] 2025-11-25 01:03:09,302 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 20:03:54] 2025-11-25 01:03:09,302 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 20:03:54] 2025-11-25 01:03:09,341 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 20:03:54] 2025-11-25 01:03:09,341 | INFO     | aborting loop
[2025-11-24 20:03:54] 2025-11-25 01:03:09,588 | INFO     | all payload control threads have been joined
[2025-11-24 20:03:54] 2025-11-25 01:03:10,023 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 20:03:54] 2025-11-25 01:03:10,307 | INFO     | [job] retrieve thread has finished
[2025-11-24 20:03:54] 2025-11-25 01:03:10,312 | INFO     | all data control threads have been joined
[2025-11-24 20:03:54] 2025-11-25 01:03:10,343 | INFO     | [payload] validate_post thread has finished
[2025-11-24 20:03:54] 2025-11-25 01:03:10,346 | INFO     | [job] job monitor thread has finished
[2025-11-24 20:03:54] 2025-11-25 01:03:10,374 | INFO     | all job control threads have been joined
[2025-11-24 20:03:54] 2025-11-25 01:03:10,494 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 20:03:54] 2025-11-25 01:03:10,593 | INFO     | [payload] control thread has finished
[2025-11-24 20:03:54] 2025-11-25 01:03:11,023 | INFO     | [job] validate thread has finished
[2025-11-24 20:03:54] 2025-11-25 01:03:11,123 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 20:03:54] 2025-11-25 01:03:11,319 | INFO     | [data] control thread has finished
[2025-11-24 20:03:54] 2025-11-25 01:03:11,380 | INFO     | [job] control thread has finished
[2025-11-24 20:03:54] 2025-11-25 01:03:11,449 | INFO     | [data] copytool_in thread has finished
[2025-11-24 20:03:54] 2025-11-25 01:03:11,473 | INFO     | [payload] failed_post thread has finished
[2025-11-24 20:03:54] 2025-11-25 01:03:11,486 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 20:03:54] 2025-11-25 01:03:12,029 | INFO     | [data] copytool_out thread has finished
[2025-11-24 20:03:54] 2025-11-25 01:03:12,093 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 20:03:54] 2025-11-25 01:03:13,099 | INFO     | [job] queue monitor thread has finished
[2025-11-24 20:03:54] 2025-11-25 01:03:13,310 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 20:03:54] 2025-11-25 01:03:19,769 | INFO     | job.realtimelogging is not enabled
[2025-11-24 20:03:54] 2025-11-25 01:03:20,775 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 20:03:54] 2025-11-25 01:03:40,890 | INFO     | PID=423937 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-24 20:03:54] 2025-11-25 01:03:40,890 | INFO     | .. there are 26 such processes running
[2025-11-24 20:03:54] 2025-11-25 01:03:40,891 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 20:03:54] 2025-11-25 01:03:40,891 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 20:03:54] 2025-11-25 01:03:40,891 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 20:03:54] 2025-11-25 01:03:47,688 | INFO     | [monitor] cgroup control has ended
[2025-11-24 20:03:54] 2025-11-25 01:03:49,030 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140272690685760)>', '<ExcThread(monitor, started 140272197420800)>']
[2025-11-24 20:03:54] 2025-11-25 01:03:49,953 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 20:03:54] 2025-11-25 01:03:49,953 | INFO     | [monitor] control thread has ended
[2025-11-24 20:03:54] 2025-11-25 01:03:54,056 | INFO     | all workflow threads have been joined
[2025-11-24 20:03:54] 2025-11-25 01:03:54,056 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 20:03:54] 2025-11-25 01:03:54,057 | INFO     | traces error code: 0
[2025-11-24 20:03:54] 2025-11-25 01:03:54,057 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 20:03:54] 2025-11-25 01:03:54,386 [wrapper] ==== pilot stdout END ====
[2025-11-24 20:03:54] 2025-11-25 01:03:54,389 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 20:03:54] 2025-11-25 01:03:54,396 [wrapper] pilotpid: 423937
[2025-11-24 20:03:54] 2025-11-25 01:03:54,403 [wrapper] Pilot exit status: 0
[2025-11-24 20:03:54] 2025-11-25 01:03:54,460 [wrapper] pandaids: 6895350284
[2025-11-24 20:03:54] 2025-11-25 01:03:54,551 [wrapper] cleanup supervisor_pilot 4160005 423938
[2025-11-24 20:03:54] 2025-11-25 01:03:54,554 [wrapper] Test setup, not cleaning
[2025-11-24 20:03:54] 2025-11-25 01:03:54,556 [wrapper] apfmon messages muted
[2025-11-24 20:03:54] 2025-11-25 01:03:54,559 [wrapper] ==== wrapper stdout END ====
[2025-11-24 20:03:54] 2025-11-25 01:03:54,563 [wrapper] ==== wrapper stderr END ====
[2025-11-24 20:03:54]  *** Error codes and diagnostics ***
[2025-11-24 20:03:54]     "exeErrorCode": 0,
[2025-11-24 20:03:54]     "exeErrorDiag": "",
[2025-11-24 20:03:54]     "pilotErrorCode": 0,
[2025-11-24 20:03:54]     "pilotErrorDiag": "",
[2025-11-24 20:03:54]  *** Listing of results directory ***
[2025-11-24 20:03:54] total 1322360
[2025-11-24 20:03:54] -rw-r--r--. 1 boincer umatlas    576529 Nov 22 15:41 pilot3.tar.gz
[2025-11-24 20:03:54] -rw-r--r--. 1 boincer umatlas      5112 Nov 22 15:55 queuedata.json
[2025-11-24 20:03:54] -rwx------. 1 boincer umatlas     36292 Nov 22 15:55 runpilot2-wrapper.sh
[2025-11-24 20:03:54] -rw-r--r--. 1 boincer umatlas       100 Nov 24 00:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 20:03:54] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 00:00 run_atlas
[2025-11-24 20:03:54] -rw-r--r--. 1 boincer umatlas       105 Nov 24 00:00 job.xml
[2025-11-24 20:03:54] -rw-r--r--. 2 boincer umatlas 410810967 Nov 24 00:00 EVNT.47483658._000504.pool.root.1
[2025-11-24 20:03:54] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 00:00 start_atlas.sh
[2025-11-24 20:03:54] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 00:00 shared
[2025-11-24 20:03:54] -rw-r--r--. 2 boincer umatlas    590100 Nov 24 00:00 input.tar.gz
[2025-11-24 20:03:54] -rw-r--r--. 1 boincer umatlas         0 Nov 24 00:00 boinc_lockfile
[2025-11-24 20:03:54] -rw-r--r--. 1 boincer umatlas      2785 Nov 24 00:01 pandaJob.out
[2025-11-24 20:03:54] -rw-------. 1 boincer umatlas        57 Nov 24 00:01 setup.sh.local
[2025-11-24 20:03:54] -rw-------. 1 boincer umatlas    989786 Nov 24 00:01 agis_schedconf.cvmfs.json
[2025-11-24 20:03:54] drwx------. 5 boincer umatlas      4096 Nov 24 00:01 pilot3
[2025-11-24 20:03:54] -rw-r--r--. 1 boincer umatlas       533 Nov 24 19:54 boinc_task_state.xml
[2025-11-24 20:03:54] -rw-r--r--. 1 boincer umatlas      6903 Nov 24 20:00 init_data.xml
[2025-11-24 20:03:54] -rw-------. 1 boincer umatlas 916629886 Nov 24 20:02 HITS.47556137._004997.pool.root.1
[2025-11-24 20:03:54] -rw-------. 1 boincer umatlas      1049 Nov 24 20:02 memory_monitor_summary.json
[2025-11-24 20:03:54] -rw-------. 1 boincer umatlas   1516227 Nov 24 20:02 agis_ddmendpoints.agis.ALL.json
[2025-11-24 20:03:54] -rw-------. 1 boincer umatlas   2266288 Nov 24 20:02 log.47556137._004997.job.log.tgz.1
[2025-11-24 20:03:54] -rw-------. 1 boincer umatlas      8580 Nov 24 20:03 heartbeat.json
[2025-11-24 20:03:54] -rw-------. 1 boincer umatlas        95 Nov 24 20:03 pilot_heartbeat.json
[2025-11-24 20:03:54] -rw-r--r--. 1 boincer umatlas      8192 Nov 24 20:03 boinc_mmap_file
[2025-11-24 20:03:54] -rw-------. 1 boincer umatlas      4895 Nov 24 20:03 pilotlog.txt
[2025-11-24 20:03:54] -rw-------. 1 boincer umatlas   9104920 Nov 24 20:03 log.47556137._004997.job.log.1
[2025-11-24 20:03:54] -rw-------. 1 boincer umatlas       353 Nov 24 20:03 output.list
[2025-11-24 20:03:54] -rw-r--r--. 1 boincer umatlas       620 Nov 24 20:03 runtime_log
[2025-11-24 20:03:54] -rw-------. 1 boincer umatlas  11386880 Nov 24 20:03 result.tar.gz
[2025-11-24 20:03:54] -rw-r--r--. 1 boincer umatlas        29 Nov 24 20:03 wrapper_checkpoint.txt
[2025-11-24 20:03:54] -rw-r--r--. 1 boincer umatlas      9343 Nov 24 20:03 runtime_log.err
[2025-11-24 20:03:54] -rw-------. 1 boincer umatlas       661 Nov 24 20:03 kzsLDm0o9g8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm8OKKDm6gLWEm.diag
[2025-11-24 20:03:54] -rw-r--r--. 1 boincer umatlas     21314 Nov 24 20:03 stderr.txt
[2025-11-24 20:03:54] HITS file was successfully produced:
[2025-11-24 20:03:54] -rw-------. 1 boincer umatlas 916629886 Nov 24 20:02 shared/HITS.pool.root.1
[2025-11-24 20:03:54]  *** Contents of shared directory: ***
[2025-11-24 20:03:54] total 1308056
[2025-11-24 20:03:54] -rw-r--r--. 2 boincer umatlas 410810967 Nov 24 00:00 ATLAS.root_0
[2025-11-24 20:03:54] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 00:00 start_atlas.sh
[2025-11-24 20:03:54] -rw-r--r--. 2 boincer umatlas    590100 Nov 24 00:00 input.tar.gz
[2025-11-24 20:03:54] -rw-------. 1 boincer umatlas 916629886 Nov 24 20:02 HITS.pool.root.1
[2025-11-24 20:03:54] -rw-------. 1 boincer umatlas  11386880 Nov 24 20:03 result.tar.gz
20:03:56 (416159): run_atlas exited; CPU time 194338.097150
20:03:56 (416159): called boinc_finish(0)

</stderr_txt>
]]>

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