Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:59 (790700): wrapper (7.7.26015): starting
00:01:59 (790700): wrapper: running run_atlas (--nthreads 12)
[2025-11-24 00:02:00] Arguments: --nthreads 12
[2025-11-24 00:02:00] Threads: 12
[2025-11-24 00:02:00] Checking for CVMFS
[2025-11-24 00:02:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 00:02:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 00:02:01] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 00:02:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 00:02:02] 2.13.2.0 10481 31077 311720 153233 0 407 35515919 40960001 21474 16776704 0 57377473 99.776 33946462 33862 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-24 00:02:02] CVMFS is ok
[2025-11-24 00:02:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 00:02:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 00:02:02] Further information can be found at the LHC@home message board.
[2025-11-24 00:02:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 00:02:02] Checking for apptainer binary...
[2025-11-24 00:02:02] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 00:02:02] Running /usr/bin/apptainer --version
[2025-11-24 00:02:02] apptainer version 1.4.4-1.el9
[2025-11-24 00:02:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 00:02:02] c-211-35-3.aglt2.org
[2025-11-24 00:02:02] apptainer works
[2025-11-24 00:02:02] Set ATHENA_PROC_NUMBER=12
[2025-11-24 00:02:02] Set ATHENA_CORE_NUMBER=12
[2025-11-24 00:02:02] Starting ATLAS job with PandaID=6895350024
[2025-11-24 00:02:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 06:14:40]  *** The last 200 lines of the pilot log: ***
[2025-11-25 06:14:40] 2025-11-25 11:13:50,568 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 06:14:40] 2025-11-25 11:13:51,011 | INFO     | time since job start (108643s) is within the limit (172800.0s)
[2025-11-25 06:14:40] 2025-11-25 11:13:53,238 | INFO     | monitor loop #6017: job 0:6895350024 is in state 'finished'
[2025-11-25 06:14:40] 2025-11-25 11:13:53,238 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 06:14:40] 2025-11-25 11:13:55,380 | INFO     | PID=799449 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-25 06:14:40] 2025-11-25 11:13:55,380 | INFO     | .. there are 19 such processes running
[2025-11-25 06:14:40] 2025-11-25 11:13:55,782 | INFO     | monitor loop #6018: job 0:6895350024 is in state 'finished'
[2025-11-25 06:14:40] 2025-11-25 11:13:55,782 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 06:14:40] 2025-11-25 11:13:56,382 | INFO     | time since job start (108648s) is within the limit (172800.0s)
[2025-11-25 06:14:40] 2025-11-25 11:13:58,293 | INFO     | monitor loop #6019: job 0:6895350024 is in state 'finished'
[2025-11-25 06:14:40] 2025-11-25 11:13:58,293 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 06:14:40] 2025-11-25 11:13:58,389 | INFO     | time since job start (108650s) is within the limit (172800.0s)
[2025-11-25 06:14:40] 2025-11-25 11:14:00,126 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-25 06:14:40] 2025-11-25 11:14:00,180 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2592.2469375
[2025-11-25 06:14:40] 2025-11-25 11:14:00,321 | INFO     | using path: /tmp/boinchome/slots/6/PanDA_Pilot-6895350024/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 06:14:40] 2025-11-25 11:14:00,337 | INFO     | extracted standard info from prmon json
[2025-11-25 06:14:40] 2025-11-25 11:14:00,337 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 06:14:40] 2025-11-25 11:14:00,337 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 06:14:40] 2025-11-25 11:14:00,482 | INFO     | time since job start (108652s) is within the limit (172800.0s)
[2025-11-25 06:14:40] 2025-11-25 11:14:00,550 | INFO     | fitting pss+swap vs Time
[2025-11-25 06:14:40] 2025-11-25 11:14:00,553 | INFO     | sum of square deviations: 1743164915473.173
[2025-11-25 06:14:40] 2025-11-25 11:14:00,825 | INFO     | monitor loop #6020: job 0:6895350024 is in state 'finished'
[2025-11-25 06:14:40] 2025-11-25 11:14:00,825 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 06:14:40] 2025-11-25 11:14:00,983 | INFO     | sum of deviations: 6783949545677.71
[2025-11-25 06:14:40] 2025-11-25 11:14:00,983 | INFO     | mean x: 1764014937.6327333
[2025-11-25 06:14:40] 2025-11-25 11:14:00,983 | INFO     | mean y: 3405083.6580427447
[2025-11-25 06:14:40] 2025-11-25 11:14:00,983 | INFO     | intersect: -6861687386.077615
[2025-11-25 06:14:40] 2025-11-25 11:14:00,985 | INFO     | chi2: 49.758729258532156
[2025-11-25 06:14:40] 2025-11-25 11:14:01,036 | INFO     | sum of square deviations: 1728505522999.3933
[2025-11-25 06:14:40] 2025-11-25 11:14:01,233 | INFO     | sum of deviations: 7544465719466.284
[2025-11-25 06:14:40] 2025-11-25 11:14:01,234 | INFO     | mean x: 1764014785.1494641
[2025-11-25 06:14:40] 2025-11-25 11:14:01,234 | INFO     | mean y: 3412993.14608009
[2025-11-25 06:14:40] 2025-11-25 11:14:01,234 | INFO     | intersect: -7696041187.421492
[2025-11-25 06:14:40] 2025-11-25 11:14:01,244 | INFO     | chi2: 45.97410612113619
[2025-11-25 06:14:40] 2025-11-25 11:14:01,244 | INFO     | current chi2=45.97410612113619 (change=7.605948129688253 %)
[2025-11-25 06:14:40] 2025-11-25 11:14:01,244 | INFO     | right removable region: 1772
[2025-11-25 06:14:40] 2025-11-25 11:14:01,247 | INFO     | sum of square deviations: 1728493555745.6802
[2025-11-25 06:14:40] 2025-11-25 11:14:01,375 | INFO     | sum of deviations: 5942879018379.199
[2025-11-25 06:14:40] 2025-11-25 11:14:01,376 | INFO     | mean x: 1764015090.178229
[2025-11-25 06:14:40] 2025-11-25 11:14:01,376 | INFO     | mean y: 3413827.777777778
[2025-11-25 06:14:40] 2025-11-25 11:14:01,376 | INFO     | intersect: -6061594764.6331625
[2025-11-25 06:14:40] 2025-11-25 11:14:01,382 | INFO     | chi2: 45.48870602682214
[2025-11-25 06:14:40] 2025-11-25 11:14:01,383 | INFO     | current chi2=45.48870602682214 (change=8.581455546270467 %)
[2025-11-25 06:14:40] 2025-11-25 11:14:01,383 | INFO     | left removable region: 10
[2025-11-25 06:14:40] 2025-11-25 11:14:01,389 | INFO     | sum of square deviations: 1696520939029.0747
[2025-11-25 06:14:40] 2025-11-25 11:14:01,556 | INFO     | sum of deviations: 6046986186428.686
[2025-11-25 06:14:40] 2025-11-25 11:14:01,556 | INFO     | mean x: 1764015059.7446084
[2025-11-25 06:14:40] 2025-11-25 11:14:01,556 | INFO     | mean y: 3431568.150397276
[2025-11-25 06:14:40] 2025-11-25 11:14:01,556 | INFO     | intersect: -6284126960.3241
[2025-11-25 06:14:40] 2025-11-25 11:14:01,563 | INFO     | chi2: 37.30780779079753
[2025-11-25 06:14:40] 2025-11-25 11:14:01,563 | INFO     | current memory leak: 3.56 B/s (using 1762 data points, chi2=37.31)
[2025-11-25 06:14:40] 2025-11-25 11:14:01,565 | INFO     | could have reported an average CPU frequency of 2580 MHz (62 samples)
[2025-11-25 06:14:40] 2025-11-25 11:14:01,565 | INFO     | ..............................
[2025-11-25 06:14:40] 2025-11-25 11:14:01,565 | INFO     | . Timing measurements:
[2025-11-25 06:14:40] 2025-11-25 11:14:01,565 | INFO     | . get job = 0 s
[2025-11-25 06:14:40] 2025-11-25 11:14:01,565 | INFO     | . initial setup = 5 s
[2025-11-25 06:14:40] 2025-11-25 11:14:01,565 | INFO     | . payload setup = 44 s
[2025-11-25 06:14:40] 2025-11-25 11:14:01,565 | INFO     | . stage-in = 0 s
[2025-11-25 06:14:40] 2025-11-25 11:14:01,566 | INFO     | . payload execution = 108491 s
[2025-11-25 06:14:40] 2025-11-25 11:14:01,566 | INFO     | . stage-out = 10 s
[2025-11-25 06:14:40] 2025-11-25 11:14:01,566 | INFO     | . log creation = 3 s
[2025-11-25 06:14:40] 2025-11-25 11:14:01,566 | INFO     | ..............................
[2025-11-25 06:14:40] 2025-11-25 11:14:01,807 | INFO     | 
[2025-11-25 06:14:40] 2025-11-25 11:14:01,807 | INFO     | job summary report
[2025-11-25 06:14:40] 2025-11-25 11:14:01,807 | INFO     | --------------------------------------------------
[2025-11-25 06:14:40] 2025-11-25 11:14:01,807 | INFO     | PanDA job id: 6895350024
[2025-11-25 06:14:40] 2025-11-25 11:14:01,807 | INFO     | task id: 47556137
[2025-11-25 06:14:40] 2025-11-25 11:14:01,807 | INFO     | errors: (none)
[2025-11-25 06:14:40] 2025-11-25 11:14:01,808 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 06:14:40] 2025-11-25 11:14:01,808 | INFO     | pilot state: finished 
[2025-11-25 06:14:40] 2025-11-25 11:14:01,808 | INFO     | transexitcode: 0
[2025-11-25 06:14:40] 2025-11-25 11:14:01,808 | INFO     | exeerrorcode: 0
[2025-11-25 06:14:40] 2025-11-25 11:14:01,808 | INFO     | exeerrordiag: 
[2025-11-25 06:14:40] 2025-11-25 11:14:01,808 | INFO     | exitcode: 0
[2025-11-25 06:14:40] 2025-11-25 11:14:01,808 | INFO     | exitmsg: OK
[2025-11-25 06:14:40] 2025-11-25 11:14:01,808 | INFO     | cpuconsumptiontime: 272503 s
[2025-11-25 06:14:40] 2025-11-25 11:14:01,808 | INFO     | nevents: 1000
[2025-11-25 06:14:40] 2025-11-25 11:14:01,808 | INFO     | neventsw: 0
[2025-11-25 06:14:40] 2025-11-25 11:14:01,808 | INFO     | pid: 824559
[2025-11-25 06:14:40] 2025-11-25 11:14:01,808 | INFO     | pgrp: 824559
[2025-11-25 06:14:40] 2025-11-25 11:14:01,808 | INFO     | corecount: 12
[2025-11-25 06:14:40] 2025-11-25 11:14:01,808 | INFO     | event service: False
[2025-11-25 06:14:40] 2025-11-25 11:14:01,809 | INFO     | sizes: {0: 2298529, 1: 2298784, 12: 2298784, 24: 2298812, 31: 2299102, 35: 2299130, 108541: 2373160, 108542: 2373159, 108553: 2383005, 108556: 2383061, 108590: 238
[2025-11-25 06:14:40] 2025-11-25 11:14:01,809 | INFO     | --------------------------------------------------
[2025-11-25 06:14:40] 2025-11-25 11:14:01,809 | INFO     | 
[2025-11-25 06:14:40] 2025-11-25 11:14:01,809 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2025-11-25 06:14:40] 2025-11-25 11:14:01,856 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 06:14:40] 2025-11-25 11:14:01,857 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 06:14:40] 2025-11-25 11:14:01,857 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 06:14:40] 2025-11-25 11:14:01,857 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 06:14:40] 2025-11-25 11:14:01,857 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 06:14:40] 2025-11-25 11:14:01,857 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 06:14:40] 2025-11-25 11:14:01,857 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 06:14:40] 2025-11-25 11:14:01,857 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 06:14:40] 2025-11-25 11:14:01,857 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 06:14:40] 2025-11-25 11:14:01,857 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 06:14:40] 2025-11-25 11:14:01,857 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 06:14:40] 2025-11-25 11:14:01,858 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 06:14:40] 2025-11-25 11:14:01,858 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 06:14:40] 2025-11-25 11:14:01,858 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 06:14:40] 2025-11-25 11:14:01,858 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 06:14:40] 2025-11-25 11:14:01,858 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 06:14:40] 2025-11-25 11:14:01,858 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 06:14:40] 2025-11-25 11:14:01,858 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 06:14:40] 2025-11-25 11:14:01,858 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 06:14:40] 2025-11-25 11:14:01,858 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 06:14:40] 2025-11-25 11:14:01,858 | INFO     | job 6895350024 has completed (purged errors)
[2025-11-25 06:14:40] 2025-11-25 11:14:01,859 | INFO     | overall cleanup function is called
[2025-11-25 06:14:40] 2025-11-25 11:14:02,896 | INFO     | --- collectZombieJob: --- 10, [824559]
[2025-11-25 06:14:40] 2025-11-25 11:14:02,896 | INFO     | zombie collector waiting for pid 824559
[2025-11-25 06:14:40] 2025-11-25 11:14:02,896 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 06:14:40] 2025-11-25 11:14:02,896 | INFO     | collected zombie processes
[2025-11-25 06:14:40] 2025-11-25 11:14:02,897 | INFO     | will attempt to kill all subprocesses of pid=824559
[2025-11-25 06:14:40] 2025-11-25 11:14:04,393 | INFO     | process IDs to be killed: [824559] (in reverse order)
[2025-11-25 06:14:40] 2025-11-25 11:14:05,288 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 06:14:40] 2025-11-25 11:14:05,288 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 06:14:40] 2025-11-25 11:14:05,322 | INFO     | did not find any defunct processes belonging to 824559
[2025-11-25 06:14:40] 2025-11-25 11:14:05,440 | INFO     | did not find any defunct processes belonging to 824559
[2025-11-25 06:14:40] 2025-11-25 11:14:05,831 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 06:14:40] 2025-11-25 11:14:05,832 | INFO     | ready for new job
[2025-11-25 06:14:40] 2025-11-25 11:14:05,832 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 06:14:40] 2025-11-25 11:14:05,843 | INFO     | ***************************************
[2025-11-25 06:14:40] 2025-11-25 11:14:05,843 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 06:14:40] 2025-11-25 11:14:05,844 | INFO     | ***************************************
[2025-11-25 06:14:40] 2025-11-25 11:14:05,844 | INFO     | 
[2025-11-25 06:14:40] 2025-11-25 11:14:05,850 | INFO     | architecture information:
[2025-11-25 06:14:40] 2025-11-25 11:14:05,870 | INFO     | executing command: cat /etc/os-release
[2025-11-25 06:14:40] 2025-11-25 11:14:06,525 | INFO     | cat /etc/os-release:
[2025-11-25 06:14:40] NAME="CentOS Linux"
[2025-11-25 06:14:40] VERSION="7 (Core)"
[2025-11-25 06:14:40] ID="centos"
[2025-11-25 06:14:40] ID_LIKE="rhel fedora"
[2025-11-25 06:14:40] VERSION_ID="7"
[2025-11-25 06:14:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 06:14:40] ANSI_COLOR="0;31"
[2025-11-25 06:14:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 06:14:40] HOME_URL="https://www.centos.org/"
[2025-11-25 06:14:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 06:14:40] 
[2025-11-25 06:14:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 06:14:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 06:14:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 06:14:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 06:14:40] 
[2025-11-25 06:14:40] 2025-11-25 11:14:06,532 | INFO     | ***************************************
[2025-11-25 06:14:40] 2025-11-25 11:14:07,035 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2025-11-25 06:14:40] 2025-11-25 11:14:08,277 | INFO     | sufficient remaining disk space (119478943744 B)
[2025-11-25 06:14:40] 2025-11-25 11:14:08,277 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 06:14:40] 2025-11-25 11:14:08,277 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 06:14:40] 2025-11-25 11:14:08,277 | INFO     | update_server=False
[2025-11-25 06:14:40] 2025-11-25 11:14:08,277 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 06:14:40] 2025-11-25 11:14:08,460 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-25 06:14:40] 2025-11-25 11:14:08,461 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-25 06:14:40] 2025-11-25 11:14:08,461 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 06:14:40] 2025-11-25 11:14:08,461 | INFO     | will abort loop
[2025-11-25 06:14:40] 2025-11-25 11:14:08,589 | INFO     | all payload control threads have been joined
[2025-11-25 06:14:40] 2025-11-25 11:14:08,777 | INFO     | all data control threads have been joined
[2025-11-25 06:14:40] 2025-11-25 11:14:08,961 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 06:14:40] 2025-11-25 11:14:09,000 | INFO     | all job control threads have been joined
[2025-11-25 06:14:40] 2025-11-25 11:14:09,283 | INFO     | [job] retrieve thread has finished
[2025-11-25 06:14:40] 2025-11-25 11:14:09,472 | INFO     | [job] job monitor thread has finished
[2025-11-25 06:14:40] 2025-11-25 11:14:09,595 | INFO     | [payload] control thread has finished
[2025-11-25 06:14:40] 2025-11-25 11:14:09,643 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 06:14:40] 2025-11-25 11:14:09,699 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 06:14:40] 2025-11-25 11:14:09,710 | INFO     | [payload] failed_post thread has finished
[2025-11-25 06:14:40] 2025-11-25 11:14:09,742 | INFO     | [data] copytool_in thread has finished
[2025-11-25 06:14:40] 2025-11-25 11:14:09,805 | INFO     | [data] control thread has finished
[2025-11-25 06:14:40] 2025-11-25 11:14:10,018 | INFO     | [job] control thread has finished
[2025-11-25 06:14:40] 2025-11-25 11:14:10,268 | INFO     | [job] validate thread has finished
[2025-11-25 06:14:40] 2025-11-25 11:14:10,269 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 06:14:40] 2025-11-25 11:14:10,382 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 06:14:40] 2025-11-25 11:14:10,666 | INFO     | [payload] validate_post thread has finished
[2025-11-25 06:14:40] 2025-11-25 11:14:10,822 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 06:14:40] 2025-11-25 11:14:10,966 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 06:14:40] 2025-11-25 11:14:10,991 | INFO     | [data] copytool_out thread has finished
[2025-11-25 06:14:40] 2025-11-25 11:14:11,990 | INFO     | [job] queue monitor thread has finished
[2025-11-25 06:14:40] 2025-11-25 11:14:14,831 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 06:14:40] 2025-11-25 11:14:30,701 | INFO     | [monitor] cgroup control has ended
[2025-11-25 06:14:40] 2025-11-25 11:14:31,784 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140089982994240)>', '<ExcThread(monitor, started 140089701140224)>']
[2025-11-25 06:14:40] 2025-11-25 11:14:36,869 | INFO     | all workflow threads have been joined
[2025-11-25 06:14:40] 2025-11-25 11:14:36,869 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 06:14:40] 2025-11-25 11:14:36,870 | INFO     | traces error code: 0
[2025-11-25 06:14:40] 2025-11-25 11:14:36,870 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 06:14:40] 2025-11-25 11:14:38,597 | INFO     | PID=799449 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-25 06:14:40] 2025-11-25 11:14:38,597 | INFO     | .. there are 19 such processes running
[2025-11-25 06:14:40] 2025-11-25 11:14:38,598 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 06:14:40] 2025-11-25 11:14:38,598 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 06:14:40] 2025-11-25 11:14:38,599 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 06:14:40] 2025-11-25 11:14:38,599 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 06:14:40] 2025-11-25 11:14:38,599 | INFO     | [monitor] control thread has ended
[2025-11-25 06:14:40] 2025-11-25 11:14:39,877 [wrapper] ==== pilot stdout END ====
[2025-11-25 06:14:40] 2025-11-25 11:14:39,897 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 06:14:40] 2025-11-25 11:14:39,925 [wrapper] pilotpid: 799449
[2025-11-25 06:14:40] 2025-11-25 11:14:39,941 [wrapper] Pilot exit status: 0
[2025-11-25 06:14:40] 2025-11-25 11:14:40,031 [wrapper] pandaids: 6895350024
[2025-11-25 06:14:40] 2025-11-25 11:14:40,153 [wrapper] cleanup supervisor_pilot 4188267 799450
[2025-11-25 06:14:40] 2025-11-25 11:14:40,188 [wrapper] Test setup, not cleaning
[2025-11-25 06:14:40] 2025-11-25 11:14:40,203 [wrapper] apfmon messages muted
[2025-11-25 06:14:40] 2025-11-25 11:14:40,218 [wrapper] ==== wrapper stdout END ====
[2025-11-25 06:14:40] 2025-11-25 11:14:40,251 [wrapper] ==== wrapper stderr END ====
[2025-11-25 06:14:40]  *** Error codes and diagnostics ***
[2025-11-25 06:14:40]     "exeErrorCode": 0,
[2025-11-25 06:14:40]     "exeErrorDiag": "",
[2025-11-25 06:14:40]     "pilotErrorCode": 0,
[2025-11-25 06:14:40]     "pilotErrorDiag": "",
[2025-11-25 06:14:40]  *** Listing of results directory ***
[2025-11-25 06:14:40] total 1320288
[2025-11-25 06:14:40] -rw-r--r--. 1 boincer umatlas    576529 Nov 22 15:26 pilot3.tar.gz
[2025-11-25 06:14:40] -rwx------. 1 boincer umatlas     36292 Nov 22 15:33 runpilot2-wrapper.sh
[2025-11-25 06:14:40] -rw-r--r--. 1 boincer umatlas      5112 Nov 22 15:33 queuedata.json
[2025-11-25 06:14:40] -rw-r--r--. 1 boincer umatlas       100 Nov 24 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 06:14:40] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 00:01 run_atlas
[2025-11-25 06:14:40] -rw-r--r--. 1 boincer umatlas       105 Nov 24 00:01 job.xml
[2025-11-25 06:14:40] -rw-r--r--. 2 boincer umatlas 409979529 Nov 24 00:01 EVNT.47483658._000491.pool.root.1
[2025-11-25 06:14:40] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 00:01 start_atlas.sh
[2025-11-25 06:14:40] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 00:01 shared
[2025-11-25 06:14:40] -rw-r--r--. 2 boincer umatlas    590097 Nov 24 00:01 input.tar.gz
[2025-11-25 06:14:40] -rw-r--r--. 1 boincer umatlas         0 Nov 24 00:01 boinc_lockfile
[2025-11-25 06:14:40] -rw-r--r--. 1 boincer umatlas      2785 Nov 24 00:02 pandaJob.out
[2025-11-25 06:14:40] -rw-------. 1 boincer umatlas        57 Nov 24 00:02 setup.sh.local
[2025-11-25 06:14:40] -rw-------. 1 boincer umatlas    989786 Nov 24 00:03 agis_schedconf.cvmfs.json
[2025-11-25 06:14:40] drwx------. 5 boincer umatlas      4096 Nov 24 00:03 pilot3
[2025-11-25 06:14:40] -rw-r--r--. 1 boincer umatlas       533 Nov 25 05:13 boinc_task_state.xml
[2025-11-25 06:14:40] -rw-r--r--. 1 boincer umatlas      6880 Nov 25 06:09 init_data.xml
[2025-11-25 06:14:40] -rw-------. 1 boincer umatlas 906081620 Nov 25 06:10 HITS.47556137._004863.pool.root.1
[2025-11-25 06:14:40] -rw-------. 1 boincer umatlas      1061 Nov 25 06:13 memory_monitor_summary.json
[2025-11-25 06:14:40] -rw-------. 1 boincer umatlas   1516240 Nov 25 06:13 agis_ddmendpoints.agis.ALL.json
[2025-11-25 06:14:40] -rw-------. 1 boincer umatlas   3100852 Nov 25 06:13 log.47556137._004863.job.log.tgz.1
[2025-11-25 06:14:40] -rw-------. 1 boincer umatlas      8631 Nov 25 06:14 heartbeat.json
[2025-11-25 06:14:40] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 06:14 boinc_mmap_file
[2025-11-25 06:14:40] -rw-r--r--. 1 boincer umatlas        29 Nov 25 06:14 wrapper_checkpoint.txt
[2025-11-25 06:14:40] -rw-------. 1 boincer umatlas       822 Nov 25 06:14 pilotlog.txt
[2025-11-25 06:14:40] -rw-------. 1 boincer umatlas        95 Nov 25 06:14 pilot_heartbeat.json
[2025-11-25 06:14:40] -rw-------. 1 boincer umatlas  12899624 Nov 25 06:14 log.47556137._004863.job.log.1
[2025-11-25 06:14:40] -rw-------. 1 boincer umatlas       353 Nov 25 06:14 output.list
[2025-11-25 06:14:40] -rw-r--r--. 1 boincer umatlas       620 Nov 25 06:14 runtime_log
[2025-11-25 06:14:40] -rw-------. 1 boincer umatlas  16015360 Nov 25 06:14 result.tar.gz
[2025-11-25 06:14:40] -rw-r--r--. 1 boincer umatlas      9356 Nov 25 06:14 runtime_log.err
[2025-11-25 06:14:40] -rw-------. 1 boincer umatlas       665 Nov 25 06:14 lEOMDmxT9g8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmRNKKDmFIDsom.diag
[2025-11-25 06:14:40] -rw-r--r--. 1 boincer umatlas     21875 Nov 25 06:14 stderr.txt
[2025-11-25 06:14:40] HITS file was successfully produced:
[2025-11-25 06:14:40] -rw-------. 1 boincer umatlas 906081620 Nov 25 06:10 shared/HITS.pool.root.1
[2025-11-25 06:14:40]  *** Contents of shared directory: ***
[2025-11-25 06:14:41] total 1301464
[2025-11-25 06:14:41] -rw-r--r--. 2 boincer umatlas 409979529 Nov 24 00:01 ATLAS.root_0
[2025-11-25 06:14:41] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 00:01 start_atlas.sh
[2025-11-25 06:14:41] -rw-r--r--. 2 boincer umatlas    590097 Nov 24 00:01 input.tar.gz
[2025-11-25 06:14:41] -rw-------. 1 boincer umatlas 906081620 Nov 25 06:10 HITS.pool.root.1
[2025-11-25 06:14:41] -rw-------. 1 boincer umatlas  16015360 Nov 25 06:14 result.tar.gz
06:14:42 (790700): run_atlas exited; CPU time 274924.669481
06:14:42 (790700): called boinc_finish(0)

</stderr_txt>
]]>

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