Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:03:16 (577539): wrapper (7.7.26015): starting
00:03:16 (577539): wrapper: running run_atlas (--nthreads 9)
[2025-11-24 00:03:16] Arguments: --nthreads 9
[2025-11-24 00:03:16] Threads: 9
[2025-11-24 00:03:16] Checking for CVMFS
[2025-11-24 00:03:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 00:03:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 00:03:17] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 00:03:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 00:03:17] 2.13.2.0 3240580 25548 175972 153233 0 320 25746791 40960001 10302 16776704 0 30460234 99.737 17724328 37853 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-24 00:03:17] CVMFS is ok
[2025-11-24 00:03:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 00:03:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 00:03:17] Further information can be found at the LHC@home message board.
[2025-11-24 00:03:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 00:03:17] Checking for apptainer binary...
[2025-11-24 00:03:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 00:03:17] Running /usr/bin/apptainer --version
[2025-11-24 00:03:17] apptainer version 1.4.4-1.el9
[2025-11-24 00:03:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 00:03:17] c-210-37-4.aglt2.org
[2025-11-24 00:03:17] apptainer works
[2025-11-24 00:03:17] Set ATHENA_PROC_NUMBER=9
[2025-11-24 00:03:17] Set ATHENA_CORE_NUMBER=9
[2025-11-24 00:03:17] Starting ATLAS job with PandaID=6894259506
[2025-11-24 00:03:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 23:01:06]  *** The last 200 lines of the pilot log: ***
[2025-11-25 23:01:06] 2025-11-26 03:59:58,842 | INFO     | time since job start (168973s) is within the limit (172800.0s)
[2025-11-25 23:01:06] 2025-11-26 04:00:00,882 | INFO     | time since job start (168975s) is within the limit (172800.0s)
[2025-11-25 23:01:06] 2025-11-26 04:00:01,130 | INFO     | monitor loop #10252: job 0:6894259506 is in state 'finished'
[2025-11-25 23:01:06] 2025-11-26 04:00:01,130 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 23:01:06] 2025-11-26 04:00:02,902 | INFO     | time since job start (168977s) is within the limit (172800.0s)
[2025-11-25 23:01:06] 2025-11-26 04:00:03,635 | INFO     | monitor loop #10253: job 0:6894259506 is in state 'finished'
[2025-11-25 23:01:06] 2025-11-26 04:00:03,635 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 23:01:06] 2025-11-26 04:00:04,911 | INFO     | time since job start (168979s) is within the limit (172800.0s)
[2025-11-25 23:01:06] 2025-11-26 04:00:06,141 | INFO     | monitor loop #10254: job 0:6894259506 is in state 'finished'
[2025-11-25 23:01:06] 2025-11-26 04:00:06,141 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 23:01:06] 2025-11-26 04:00:06,936 | INFO     | time since job start (168981s) is within the limit (172800.0s)
[2025-11-25 23:01:06] 2025-11-26 04:00:07,961 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-25 23:01:06] 2025-11-26 04:00:07,964 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2976.3469642857153
[2025-11-25 23:01:06] 2025-11-26 04:00:08,065 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6894259506/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 23:01:06] 2025-11-26 04:00:08,065 | INFO     | extracted standard info from prmon json
[2025-11-25 23:01:06] 2025-11-26 04:00:08,066 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 23:01:06] 2025-11-26 04:00:08,066 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 23:01:06] 2025-11-26 04:00:08,217 | INFO     | fitting pss+swap vs Time
[2025-11-25 23:01:06] 2025-11-26 04:00:08,297 | INFO     | sum of square deviations: 6583004195062.173
[2025-11-25 23:01:06] 2025-11-26 04:00:08,650 | INFO     | monitor loop #10255: job 0:6894259506 is in state 'finished'
[2025-11-25 23:01:06] 2025-11-26 04:00:08,650 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 23:01:06] 2025-11-26 04:00:08,870 | INFO     | sum of deviations: 16629886198825.652
[2025-11-25 23:01:06] 2025-11-26 04:00:08,870 | INFO     | mean x: 1764045103.1719031
[2025-11-25 23:01:06] 2025-11-26 04:00:08,870 | INFO     | mean y: 3075021.4586493317
[2025-11-25 23:01:06] 2025-11-26 04:00:08,871 | INFO     | intersect: -4453229189.519807
[2025-11-25 23:01:06] 2025-11-26 04:00:08,881 | INFO     | chi2: 26.370561634312025
[2025-11-25 23:01:06] 2025-11-26 04:00:08,893 | INFO     | sum of square deviations: 6547409096172.344
[2025-11-25 23:01:06] 2025-11-26 04:00:08,959 | INFO     | time since job start (168983s) is within the limit (172800.0s)
[2025-11-25 23:01:06] 2025-11-26 04:00:10,273 | INFO     | sum of deviations: 17778156297745.99
[2025-11-25 23:01:06] 2025-11-26 04:00:10,273 | INFO     | mean x: 1764044950.6790884
[2025-11-25 23:01:06] 2025-11-26 04:00:10,273 | INFO     | mean y: 3079940.4091895805
[2025-11-25 23:01:06] 2025-11-26 04:00:10,273 | INFO     | intersect: -4786824950.023968
[2025-11-25 23:01:06] 2025-11-26 04:00:10,276 | INFO     | chi2: 22.138103505119524
[2025-11-25 23:01:06] 2025-11-26 04:00:10,293 | INFO     | current chi2=22.138103505119524 (change=16.049935484443544 %)
[2025-11-25 23:01:06] 2025-11-26 04:00:10,293 | INFO     | right removable region: 2763
[2025-11-25 23:01:06] 2025-11-26 04:00:10,296 | INFO     | sum of square deviations: 6547402218109.994
[2025-11-25 23:01:06] 2025-11-26 04:00:11,162 | INFO     | time since job start (168986s) is within the limit (172800.0s)
[2025-11-25 23:01:06] 2025-11-26 04:00:11,521 | INFO     | sum of deviations: 15488979254179.443
[2025-11-25 23:01:06] 2025-11-26 04:00:11,521 | INFO     | mean x: 1764045255.67945
[2025-11-25 23:01:06] 2025-11-26 04:00:11,522 | INFO     | mean y: 3079908.535455861
[2025-11-25 23:01:06] 2025-11-26 04:00:11,522 | INFO     | intersect: -4170065326.543739
[2025-11-25 23:01:06] 2025-11-26 04:00:11,524 | INFO     | chi2: 22.62828616442588
[2025-11-25 23:01:06] 2025-11-26 04:00:11,524 | INFO     | current chi2=22.62828616442588 (change=14.191110230344462 %)
[2025-11-25 23:01:06] 2025-11-26 04:00:11,529 | INFO     | left removable region: 10
[2025-11-25 23:01:06] 2025-11-26 04:00:11,532 | INFO     | sum of square deviations: 6469540043161.319
[2025-11-25 23:01:06] 2025-11-26 04:00:11,677 | INFO     | monitor loop #10256: job 0:6894259506 is in state 'finished'
[2025-11-25 23:01:06] 2025-11-26 04:00:11,677 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 23:01:06] 2025-11-26 04:00:11,746 | INFO     | sum of deviations: 16207178767464.459
[2025-11-25 23:01:06] 2025-11-26 04:00:11,746 | INFO     | mean x: 1764045225.192154
[2025-11-25 23:01:06] 2025-11-26 04:00:11,746 | INFO     | mean y: 3088288.9840174355
[2025-11-25 23:01:06] 2025-11-26 04:00:11,746 | INFO     | intersect: -4416112477.66134
[2025-11-25 23:01:06] 2025-11-26 04:00:11,753 | INFO     | chi2: 16.578346388967148
[2025-11-25 23:01:06] 2025-11-26 04:00:11,754 | INFO     | current memory leak: 2.51 B/s (using 2753 data points, chi2=16.58)
[2025-11-25 23:01:06] 2025-11-26 04:00:11,760 | INFO     | could have reported an average CPU frequency of 2836 MHz (95 samples)
[2025-11-25 23:01:06] 2025-11-26 04:00:11,760 | INFO     | ..............................
[2025-11-25 23:01:06] 2025-11-26 04:00:11,761 | INFO     | . Timing measurements:
[2025-11-25 23:01:06] 2025-11-26 04:00:11,761 | INFO     | . get job = 0 s
[2025-11-25 23:01:06] 2025-11-26 04:00:11,761 | INFO     | . initial setup = 3 s
[2025-11-25 23:01:06] 2025-11-26 04:00:11,761 | INFO     | . payload setup = 17 s
[2025-11-25 23:01:06] 2025-11-26 04:00:11,761 | INFO     | . stage-in = 0 s
[2025-11-25 23:01:06] 2025-11-26 04:00:11,761 | INFO     | . payload execution = 168866 s
[2025-11-25 23:01:06] 2025-11-26 04:00:11,761 | INFO     | . stage-out = 27 s
[2025-11-25 23:01:06] 2025-11-26 04:00:11,761 | INFO     | . log creation = 11 s
[2025-11-25 23:01:06] 2025-11-26 04:00:11,761 | INFO     | ..............................
[2025-11-25 23:01:06] 2025-11-26 04:00:11,872 | INFO     | 
[2025-11-25 23:01:06] 2025-11-26 04:00:11,872 | INFO     | job summary report
[2025-11-25 23:01:06] 2025-11-26 04:00:11,872 | INFO     | --------------------------------------------------
[2025-11-25 23:01:06] 2025-11-26 04:00:11,872 | INFO     | PanDA job id: 6894259506
[2025-11-25 23:01:06] 2025-11-26 04:00:11,872 | INFO     | task id: 47533967
[2025-11-25 23:01:06] 2025-11-26 04:00:11,872 | INFO     | errors: (none)
[2025-11-25 23:01:06] 2025-11-26 04:00:11,872 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 23:01:06] 2025-11-26 04:00:11,872 | INFO     | pilot state: finished 
[2025-11-25 23:01:06] 2025-11-26 04:00:11,872 | INFO     | transexitcode: 0
[2025-11-25 23:01:06] 2025-11-26 04:00:11,873 | INFO     | exeerrorcode: 0
[2025-11-25 23:01:06] 2025-11-26 04:00:11,873 | INFO     | exeerrordiag: 
[2025-11-25 23:01:06] 2025-11-26 04:00:11,873 | INFO     | exitcode: 0
[2025-11-25 23:01:06] 2025-11-26 04:00:11,873 | INFO     | exitmsg: OK
[2025-11-25 23:01:06] 2025-11-26 04:00:11,873 | INFO     | cpuconsumptiontime: 252938 s
[2025-11-25 23:01:06] 2025-11-26 04:00:11,873 | INFO     | nevents: 1000
[2025-11-25 23:01:06] 2025-11-26 04:00:11,873 | INFO     | neventsw: 0
[2025-11-25 23:01:06] 2025-11-26 04:00:11,873 | INFO     | pid: 603276
[2025-11-25 23:01:06] 2025-11-26 04:00:11,873 | INFO     | pgrp: 603276
[2025-11-25 23:01:06] 2025-11-26 04:00:11,873 | INFO     | corecount: 9
[2025-11-25 23:01:06] 2025-11-26 04:00:11,873 | INFO     | event service: False
[2025-11-25 23:01:06] 2025-11-26 04:00:11,873 | INFO     | sizes: {0: 2298756, 10: 2299018, 11: 2299046, 168889: 2403805, 168890: 2403804, 168919: 2413650, 168922: 2413834, 168965: 2414080}
[2025-11-25 23:01:06] 2025-11-26 04:00:11,873 | INFO     | --------------------------------------------------
[2025-11-25 23:01:06] 2025-11-26 04:00:11,873 | INFO     | 
[2025-11-25 23:01:06] 2025-11-26 04:00:11,873 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-25 23:01:06] 2025-11-26 04:00:12,051 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 23:01:06] 2025-11-26 04:00:12,051 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 23:01:06] 2025-11-26 04:00:12,051 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 23:01:06] 2025-11-26 04:00:12,051 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 23:01:06] 2025-11-26 04:00:12,051 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 23:01:06] 2025-11-26 04:00:12,052 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 23:01:06] 2025-11-26 04:00:12,052 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 23:01:06] 2025-11-26 04:00:12,052 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 23:01:06] 2025-11-26 04:00:12,052 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 23:01:06] 2025-11-26 04:00:12,052 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 23:01:06] 2025-11-26 04:00:12,052 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 23:01:06] 2025-11-26 04:00:12,052 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 23:01:06] 2025-11-26 04:00:12,052 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 23:01:06] 2025-11-26 04:00:12,052 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 23:01:06] 2025-11-26 04:00:12,052 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 23:01:06] 2025-11-26 04:00:12,052 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 23:01:06] 2025-11-26 04:00:12,052 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 23:01:06] 2025-11-26 04:00:12,052 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 23:01:06] 2025-11-26 04:00:12,052 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 23:01:06] 2025-11-26 04:00:12,052 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 23:01:06] 2025-11-26 04:00:12,053 | INFO     | job 6894259506 has completed (purged errors)
[2025-11-25 23:01:06] 2025-11-26 04:00:12,053 | INFO     | overall cleanup function is called
[2025-11-25 23:01:06] 2025-11-26 04:00:13,188 | INFO     | --- collectZombieJob: --- 10, [603276]
[2025-11-25 23:01:06] 2025-11-26 04:00:13,188 | INFO     | zombie collector waiting for pid 603276
[2025-11-25 23:01:06] 2025-11-26 04:00:13,188 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 23:01:06] 2025-11-26 04:00:13,188 | INFO     | collected zombie processes
[2025-11-25 23:01:06] 2025-11-26 04:00:13,188 | INFO     | will attempt to kill all subprocesses of pid=603276
[2025-11-25 23:01:06] 2025-11-26 04:00:14,081 | INFO     | process IDs to be killed: [603276] (in reverse order)
[2025-11-25 23:01:06] 2025-11-26 04:00:14,481 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 23:01:06] 2025-11-26 04:00:14,482 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 23:01:06] 2025-11-26 04:00:14,510 | INFO     | did not find any defunct processes belonging to 603276
[2025-11-25 23:01:06] 2025-11-26 04:00:14,535 | INFO     | did not find any defunct processes belonging to 603276
[2025-11-25 23:01:06] 2025-11-26 04:00:14,545 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 23:01:06] 2025-11-26 04:00:14,545 | INFO     | ready for new job
[2025-11-25 23:01:06] 2025-11-26 04:00:14,545 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 23:01:06] 2025-11-26 04:00:14,570 | INFO     | ***************************************
[2025-11-25 23:01:06] 2025-11-26 04:00:14,571 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 23:01:06] 2025-11-26 04:00:14,571 | INFO     | ***************************************
[2025-11-25 23:01:06] 2025-11-26 04:00:14,571 | INFO     | 
[2025-11-25 23:01:06] 2025-11-26 04:00:14,582 | INFO     | architecture information:
[2025-11-25 23:01:06] 2025-11-26 04:00:14,583 | INFO     | executing command: cat /etc/os-release
[2025-11-25 23:01:06] 2025-11-26 04:00:14,786 | INFO     | cat /etc/os-release:
[2025-11-25 23:01:06] NAME="CentOS Linux"
[2025-11-25 23:01:06] VERSION="7 (Core)"
[2025-11-25 23:01:06] ID="centos"
[2025-11-25 23:01:06] ID_LIKE="rhel fedora"
[2025-11-25 23:01:06] VERSION_ID="7"
[2025-11-25 23:01:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 23:01:06] ANSI_COLOR="0;31"
[2025-11-25 23:01:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 23:01:06] HOME_URL="https://www.centos.org/"
[2025-11-25 23:01:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 23:01:06] 
[2025-11-25 23:01:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 23:01:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 23:01:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 23:01:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 23:01:06] 
[2025-11-25 23:01:06] 2025-11-26 04:00:14,786 | INFO     | ***************************************
[2025-11-25 23:01:06] 2025-11-26 04:00:15,291 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-25 23:01:06] 2025-11-26 04:00:15,454 | INFO     | sufficient remaining disk space (69138907136 B)
[2025-11-25 23:01:06] 2025-11-26 04:00:15,454 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 23:01:06] 2025-11-26 04:00:15,455 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 23:01:06] 2025-11-26 04:00:15,455 | INFO     | update_server=False
[2025-11-25 23:01:06] 2025-11-26 04:00:15,455 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 23:01:06] 2025-11-26 04:00:15,455 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 23:01:06] 2025-11-26 04:00:15,455 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 23:01:06] 2025-11-26 04:00:15,455 | INFO     | aborting loop
[2025-11-25 23:01:06] 2025-11-26 04:00:15,776 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 23:01:06] 2025-11-26 04:00:16,421 | INFO     | all data control threads have been joined
[2025-11-25 23:01:06] 2025-11-26 04:00:16,461 | INFO     | [job] retrieve thread has finished
[2025-11-25 23:01:06] 2025-11-26 04:00:16,461 | INFO     | [job] job monitor thread has finished
[2025-11-25 23:01:06] 2025-11-26 04:00:16,673 | INFO     | all payload control threads have been joined
[2025-11-25 23:01:06] 2025-11-26 04:00:16,682 | INFO     | all job control threads have been joined
[2025-11-25 23:01:06] 2025-11-26 04:00:16,869 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 23:01:06] 2025-11-26 04:00:16,888 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 23:01:06] 2025-11-26 04:00:16,917 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 23:01:06] 2025-11-26 04:00:16,917 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 23:01:06] 2025-11-26 04:00:16,918 | INFO     | [data] copytool_in thread has finished
[2025-11-25 23:01:06] 2025-11-26 04:00:16,918 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 23:01:06] 2025-11-26 04:00:17,100 | INFO     | [job] validate thread has finished
[2025-11-25 23:01:06] 2025-11-26 04:00:17,428 | INFO     | [data] control thread has finished
[2025-11-25 23:01:06] 2025-11-26 04:00:17,465 | INFO     | [data] copytool_out thread has finished
[2025-11-25 23:01:06] 2025-11-26 04:00:17,679 | INFO     | [payload] control thread has finished
[2025-11-25 23:01:06] 2025-11-26 04:00:17,696 | INFO     | [job] control thread has finished
[2025-11-25 23:01:06] 2025-11-26 04:00:17,793 | INFO     | [payload] failed_post thread has finished
[2025-11-25 23:01:06] 2025-11-26 04:00:17,793 | INFO     | [payload] validate_post thread has finished
[2025-11-25 23:01:06] 2025-11-26 04:00:17,875 | INFO     | [job] queue monitor thread has finished
[2025-11-25 23:01:06] 2025-11-26 04:00:19,863 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 23:01:06] 2025-11-26 04:00:46,976 | INFO     | PID=583390 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-25 23:01:06] 2025-11-26 04:00:46,983 | INFO     | .. there are 12 such processes running
[2025-11-25 23:01:06] 2025-11-26 04:00:46,985 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 23:01:06] 2025-11-26 04:00:46,985 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 23:01:06] 2025-11-26 04:00:46,985 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 23:01:06] 2025-11-26 04:00:57,792 | INFO     | [monitor] cgroup control has ended
[2025-11-25 23:01:06] 2025-11-26 04:00:59,162 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140215442552640)>', '<ExcThread(monitor, started 140214492190464)>']
[2025-11-25 23:01:06] 2025-11-26 04:01:00,107 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 23:01:06] 2025-11-26 04:01:00,107 | INFO     | [monitor] control thread has ended
[2025-11-25 23:01:06] 2025-11-26 04:01:04,188 | INFO     | all workflow threads have been joined
[2025-11-25 23:01:06] 2025-11-26 04:01:04,188 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 23:01:06] 2025-11-26 04:01:04,188 | INFO     | traces error code: 0
[2025-11-25 23:01:06] 2025-11-26 04:01:04,188 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 23:01:06] 2025-11-26 04:01:05,338 [wrapper] ==== pilot stdout END ====
[2025-11-25 23:01:06] 2025-11-26 04:01:05,408 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 23:01:06] 2025-11-26 04:01:05,469 [wrapper] pilotpid: 583390
[2025-11-25 23:01:06] 2025-11-26 04:01:05,538 [wrapper] Pilot exit status: 0
[2025-11-25 23:01:06] 2025-11-26 04:01:05,712 [wrapper] pandaids: 6894259506
[2025-11-25 23:01:06] 2025-11-26 04:01:05,902 [wrapper] cleanup supervisor_pilot 1968779 583391
[2025-11-25 23:01:06] 2025-11-26 04:01:05,905 [wrapper] Test setup, not cleaning
[2025-11-25 23:01:06] 2025-11-26 04:01:05,908 [wrapper] apfmon messages muted
[2025-11-25 23:01:06] 2025-11-26 04:01:05,911 [wrapper] ==== wrapper stdout END ====
[2025-11-25 23:01:06] 2025-11-26 04:01:05,914 [wrapper] ==== wrapper stderr END ====
[2025-11-25 23:01:06]  *** Error codes and diagnostics ***
[2025-11-25 23:01:06]     "exeErrorCode": 0,
[2025-11-25 23:01:06]     "exeErrorDiag": "",
[2025-11-25 23:01:06]     "pilotErrorCode": 0,
[2025-11-25 23:01:06]     "pilotErrorDiag": "",
[2025-11-25 23:01:06]  *** Listing of results directory ***
[2025-11-25 23:01:06] total 1346912
[2025-11-25 23:01:06] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 23:12 pilot3.tar.gz
[2025-11-25 23:01:06] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 23:22 queuedata.json
[2025-11-25 23:01:06] -rwx------. 1 boincer umatlas     36292 Nov 20 23:23 runpilot2-wrapper.sh
[2025-11-25 23:01:06] -rw-r--r--. 1 boincer umatlas       100 Nov 24 00:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 23:01:06] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 00:03 run_atlas
[2025-11-25 23:01:06] -rw-r--r--. 1 boincer umatlas       105 Nov 24 00:03 job.xml
[2025-11-25 23:01:06] -rw-r--r--. 2 boincer umatlas 409196819 Nov 24 00:03 EVNT.47493127._002185.pool.root.1
[2025-11-25 23:01:06] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 00:03 start_atlas.sh
[2025-11-25 23:01:06] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 00:03 shared
[2025-11-25 23:01:06] -rw-r--r--. 2 boincer umatlas    590098 Nov 24 00:03 input.tar.gz
[2025-11-25 23:01:06] -rw-r--r--. 1 boincer umatlas         0 Nov 24 00:03 boinc_lockfile
[2025-11-25 23:01:06] -rw-r--r--. 1 boincer umatlas      2785 Nov 24 00:03 pandaJob.out
[2025-11-25 23:01:06] -rw-------. 1 boincer umatlas        57 Nov 24 00:03 setup.sh.local
[2025-11-25 23:01:06] -rw-------. 1 boincer umatlas    989786 Nov 24 00:03 agis_schedconf.cvmfs.json
[2025-11-25 23:01:06] drwx------. 5 boincer umatlas      4096 Nov 24 00:03 pilot3
[2025-11-25 23:01:06] -rw-r--r--. 1 boincer umatlas       534 Nov 25 22:05 boinc_task_state.xml
[2025-11-25 23:01:06] -rw-------. 1 boincer umatlas 916314920 Nov 25 22:55 HITS.47533967._001569.pool.root.1
[2025-11-25 23:01:06] -rw-r--r--. 1 boincer umatlas      6845 Nov 25 22:57 init_data.xml
[2025-11-25 23:01:06] -rw-------. 1 boincer umatlas      1071 Nov 25 22:58 memory_monitor_summary.json
[2025-11-25 23:01:06] -rw-------. 1 boincer umatlas   1516240 Nov 25 22:59 agis_ddmendpoints.agis.ALL.json
[2025-11-25 23:01:06] -rw-------. 1 boincer umatlas   3514660 Nov 25 22:59 log.47533967._001569.job.log.tgz.1
[2025-11-25 23:01:06] -rw-------. 1 boincer umatlas      8652 Nov 25 23:00 heartbeat.json
[2025-11-25 23:01:06] -rw-------. 1 boincer umatlas        95 Nov 25 23:00 pilot_heartbeat.json
[2025-11-25 23:01:06] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 23:01 boinc_mmap_file
[2025-11-25 23:01:06] -rw-r--r--. 1 boincer umatlas        30 Nov 25 23:01 wrapper_checkpoint.txt
[2025-11-25 23:01:06] -rw-------. 1 boincer umatlas      4823 Nov 25 23:01 pilotlog.txt
[2025-11-25 23:01:06] -rw-------. 1 boincer umatlas  21392933 Nov 25 23:01 log.47533967._001569.job.log.1
[2025-11-25 23:01:06] -rw-------. 1 boincer umatlas       353 Nov 25 23:01 output.list
[2025-11-25 23:01:06] -rw-r--r--. 1 boincer umatlas       620 Nov 25 23:01 runtime_log
[2025-11-25 23:01:06] -rw-------. 1 boincer umatlas  24924160 Nov 25 23:01 result.tar.gz
[2025-11-25 23:01:06] -rw-r--r--. 1 boincer umatlas      9354 Nov 25 23:01 runtime_log.err
[2025-11-25 23:01:06] -rw-------. 1 boincer umatlas       669 Nov 25 23:01 mpuMDmSrXg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmf0IKDmpCQ7To.diag
[2025-11-25 23:01:06] -rw-r--r--. 1 boincer umatlas     21790 Nov 25 23:01 stderr.txt
[2025-11-25 23:01:06] HITS file was successfully produced:
[2025-11-25 23:01:07] -rw-------. 1 boincer umatlas 916314920 Nov 25 22:55 shared/HITS.pool.root.1
[2025-11-25 23:01:07]  *** Contents of shared directory: ***
[2025-11-25 23:01:07] total 1319388
[2025-11-25 23:01:07] -rw-r--r--. 2 boincer umatlas 409196819 Nov 24 00:03 ATLAS.root_0
[2025-11-25 23:01:07] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 00:03 start_atlas.sh
[2025-11-25 23:01:07] -rw-r--r--. 2 boincer umatlas    590098 Nov 24 00:03 input.tar.gz
[2025-11-25 23:01:07] -rw-------. 1 boincer umatlas 916314920 Nov 25 22:55 HITS.pool.root.1
[2025-11-25 23:01:07] -rw-------. 1 boincer umatlas  24924160 Nov 25 23:01 result.tar.gz
23:01:08 (577539): run_atlas exited; CPU time 255704.359994
23:01:08 (577539): called boinc_finish(0)

</stderr_txt>
]]>

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