Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
23:47:51 (12297): wrapper (7.7.26015): starting
23:47:51 (12297): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 23:47:51] Arguments: --nthreads 8
[2025-11-23 23:47:51] Threads: 8
[2025-11-23 23:47:51] Checking for CVMFS
[2025-11-23 23:47:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 23:47:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 23:47:52] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 23:47:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 23:47:52] 2.11.2.0 8539 114374 147360 153233 2 81 13993003 18432001 1885 130560 0 85950666 99.974 4760119 31523 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-23 23:47:52] CVMFS is ok
[2025-11-23 23:47:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 23:47:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 23:47:52] Further information can be found at the LHC@home message board.
[2025-11-23 23:47:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 23:47:52] Checking for apptainer binary...
[2025-11-23 23:47:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 23:47:52] Running /usr/bin/apptainer --version
[2025-11-23 23:47:52] apptainer version 1.3.2-1.el7
[2025-11-23 23:47:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 23:47:53] c-206-1.aglt2.org
[2025-11-23 23:47:53] apptainer works
[2025-11-23 23:47:53] Set ATHENA_PROC_NUMBER=8
[2025-11-23 23:47:53] Set ATHENA_CORE_NUMBER=8
[2025-11-23 23:47:53] Starting ATLAS job with PandaID=6895355980
[2025-11-23 23:47:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
02:11:42 (20393): wrapper (7.7.26015): starting
02:11:42 (20393): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 02:11:42] Arguments: --nthreads 8
[2025-11-24 02:11:42] Threads: 8
[2025-11-24 02:11:42] This job has been restarted, cleaning up previous attempt
[2025-11-24 02:11:42] Checking for CVMFS
[2025-11-24 02:11:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 02:11:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 02:11:43] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 02:11:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 02:11:43] 2.11.2.0 8539 114518 145280 153236 2 56 14009492 18432000 1 130560 0 86103739 99.974 4764030 31526 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-24 02:11:43] CVMFS is ok
[2025-11-24 02:11:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 02:11:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 02:11:43] Further information can be found at the LHC@home message board.
[2025-11-24 02:11:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 02:11:43] Checking for apptainer binary...
[2025-11-24 02:11:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 02:11:43] Running /usr/bin/apptainer --version
[2025-11-24 02:11:43] apptainer version 1.3.2-1.el7
[2025-11-24 02:11:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 02:11:44] c-206-1.aglt2.org
[2025-11-24 02:11:44] apptainer works
[2025-11-24 02:11:44] Set ATHENA_PROC_NUMBER=8
[2025-11-24 02:11:44] Set ATHENA_CORE_NUMBER=8
[2025-11-24 02:11:44] Starting ATLAS job with PandaID=6895355980
[2025-11-24 02:11:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 21:14:55]  *** The last 200 lines of the pilot log: ***
[2025-11-24 21:14:55] 2025-11-25 02:14:06,050 | INFO     | time since job start (68530s) is within the limit (172800.0s)
[2025-11-24 21:14:55] 2025-11-25 02:14:07,839 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-24 21:14:55] 2025-11-25 02:14:07,844 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2183.9583333333335
[2025-11-24 21:14:55] 2025-11-25 02:14:07,847 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6895355980/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 21:14:55] 2025-11-25 02:14:07,848 | INFO     | extracted standard info from prmon json
[2025-11-24 21:14:55] 2025-11-25 02:14:07,848 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 21:14:55] 2025-11-25 02:14:07,848 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 21:14:55] 2025-11-25 02:14:07,864 | INFO     | fitting pss+swap vs Time
[2025-11-24 21:14:55] 2025-11-25 02:14:07,865 | INFO     | sum of square deviations: 439154085720.0746
[2025-11-24 21:14:55] 2025-11-25 02:14:07,887 | INFO     | sum of deviations: 2289542702340.106
[2025-11-24 21:14:55] 2025-11-25 02:14:07,887 | INFO     | mean x: 1764002564.7399821
[2025-11-24 21:14:55] 2025-11-25 02:14:07,887 | INFO     | mean y: 3226235.3873552983
[2025-11-24 21:14:55] 2025-11-25 02:14:07,887 | INFO     | intersect: -9193452858.209967
[2025-11-24 21:14:55] 2025-11-25 02:14:07,888 | INFO     | chi2: 5.042033116709975
[2025-11-24 21:14:55] 2025-11-25 02:14:07,889 | INFO     | sum of square deviations: 433314592469.82495
[2025-11-24 21:14:55] 2025-11-25 02:14:07,912 | INFO     | sum of deviations: 2638957026862.246
[2025-11-24 21:14:55] 2025-11-25 02:14:07,912 | INFO     | mean x: 1764002412.2432916
[2025-11-24 21:14:55] 2025-11-25 02:14:07,913 | INFO     | mean y: 3235354.4329159213
[2025-11-24 21:14:55] 2025-11-25 02:14:07,913 | INFO     | intersect: -10739829019.785128
[2025-11-24 21:14:55] 2025-11-25 02:14:07,914 | INFO     | chi2: 2.6788135487450897
[2025-11-24 21:14:55] 2025-11-25 02:14:07,914 | INFO     | current chi2=2.6788135487450897 (change=46.8703698143683 %)
[2025-11-24 21:14:55] 2025-11-25 02:14:07,915 | INFO     | sum of square deviations: 427527100194.55096
[2025-11-24 21:14:55] 2025-11-25 02:14:07,937 | INFO     | sum of deviations: 2730190622105.6045
[2025-11-24 21:14:55] 2025-11-25 02:14:07,937 | INFO     | mean x: 1764002259.7466307
[2025-11-24 21:14:55] 2025-11-25 02:14:07,937 | INFO     | mean y: 3237755.828391734
[2025-11-24 21:14:55] 2025-11-25 02:14:07,937 | INFO     | intersect: -11261691238.711937
[2025-11-24 21:14:55] 2025-11-25 02:14:07,938 | INFO     | chi2: 2.4204164644372614
[2025-11-24 21:14:55] 2025-11-25 02:14:07,938 | INFO     | current chi2=2.4204164644372614 (change=9.645952568400153 %)
[2025-11-24 21:14:55] 2025-11-25 02:14:07,939 | INFO     | right removable region: 1112
[2025-11-24 21:14:55] 2025-11-25 02:14:07,939 | INFO     | monitor loop #4895: job 0:6895355980 is in state 'finished'
[2025-11-24 21:14:55] 2025-11-25 02:14:07,940 | INFO     | sum of square deviations: 433314153819.3101
[2025-11-24 21:14:55] 2025-11-25 02:14:07,940 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 21:14:55] 2025-11-25 02:14:07,962 | INFO     | sum of deviations: 1972282199927.0322
[2025-11-24 21:14:55] 2025-11-25 02:14:07,962 | INFO     | mean x: 1764002717.242397
[2025-11-24 21:14:55] 2025-11-25 02:14:07,963 | INFO     | mean y: 3234509.033094812
[2025-11-24 21:14:55] 2025-11-25 02:14:07,963 | INFO     | intersect: -8025838922.274367
[2025-11-24 21:14:55] 2025-11-25 02:14:07,964 | INFO     | chi2: 2.976450058017441
[2025-11-24 21:14:55] 2025-11-25 02:14:07,964 | INFO     | current chi2=2.976450058017441 (change=40.967264809247574 %)
[2025-11-24 21:14:55] 2025-11-25 02:14:07,965 | INFO     | sum of square deviations: 427526359412.50903
[2025-11-24 21:14:55] 2025-11-25 02:14:07,987 | INFO     | sum of deviations: 1868735857916.2024
[2025-11-24 21:14:55] 2025-11-25 02:14:07,987 | INFO     | mean x: 1764002869.7430367
[2025-11-24 21:14:55] 2025-11-25 02:14:07,987 | INFO     | mean y: 3237236.993710692
[2025-11-24 21:14:55] 2025-11-25 02:14:07,987 | INFO     | intersect: -7707294157.341283
[2025-11-24 21:14:55] 2025-11-25 02:14:07,988 | INFO     | chi2: 2.8735459863386126
[2025-11-24 21:14:55] 2025-11-25 02:14:07,988 | INFO     | current chi2=2.8735459863386126 (change=3.4572752666097424 %)
[2025-11-24 21:14:55] 2025-11-25 02:14:07,988 | INFO     | left removable region: 20
[2025-11-24 21:14:55] 2025-11-25 02:14:07,989 | INFO     | sum of square deviations: 403781018844.75
[2025-11-24 21:14:55] 2025-11-25 02:14:08,016 | INFO     | sum of deviations: 2172068364882.2495
[2025-11-24 21:14:55] 2025-11-25 02:14:08,016 | INFO     | mean x: 1764002839.25
[2025-11-24 21:14:55] 2025-11-25 02:14:08,016 | INFO     | mean y: 3252456.4423076925
[2025-11-24 21:14:55] 2025-11-25 02:14:08,016 | INFO     | intersect: -9485887903.992966
[2025-11-24 21:14:55] 2025-11-25 02:14:08,017 | INFO     | chi2: 0.19149983313942223
[2025-11-24 21:14:55] 2025-11-25 02:14:08,017 | INFO     | current memory leak: 5.38 B/s (using 1092 data points, chi2=0.19)
[2025-11-24 21:14:55] 2025-11-25 02:14:08,018 | INFO     | could have reported an average CPU frequency of 2579 MHz (41 samples)
[2025-11-24 21:14:55] 2025-11-25 02:14:08,018 | INFO     | ..............................
[2025-11-24 21:14:55] 2025-11-25 02:14:08,018 | INFO     | . Timing measurements:
[2025-11-24 21:14:55] 2025-11-25 02:14:08,019 | INFO     | . get job = 0 s
[2025-11-24 21:14:55] 2025-11-25 02:14:08,019 | INFO     | . initial setup = 1 s
[2025-11-24 21:14:55] 2025-11-25 02:14:08,019 | INFO     | . payload setup = 6 s
[2025-11-24 21:14:55] 2025-11-25 02:14:08,019 | INFO     | . stage-in = 0 s
[2025-11-24 21:14:55] 2025-11-25 02:14:08,019 | INFO     | . payload execution = 68498 s
[2025-11-24 21:14:55] 2025-11-25 02:14:08,019 | INFO     | . stage-out = 3 s
[2025-11-24 21:14:55] 2025-11-25 02:14:08,019 | INFO     | . log creation = 0 s
[2025-11-24 21:14:55] 2025-11-25 02:14:08,019 | INFO     | ..............................
[2025-11-24 21:14:55] 2025-11-25 02:14:08,060 | INFO     | time since job start (68532s) is within the limit (172800.0s)
[2025-11-24 21:14:55] 2025-11-25 02:14:08,100 | INFO     | 
[2025-11-24 21:14:55] 2025-11-25 02:14:08,101 | INFO     | job summary report
[2025-11-24 21:14:55] 2025-11-25 02:14:08,101 | INFO     | --------------------------------------------------
[2025-11-24 21:14:55] 2025-11-25 02:14:08,102 | INFO     | PanDA job id: 6895355980
[2025-11-24 21:14:55] 2025-11-25 02:14:08,103 | INFO     | task id: 47556137
[2025-11-24 21:14:55] 2025-11-25 02:14:08,103 | INFO     | errors: (none)
[2025-11-24 21:14:55] 2025-11-25 02:14:08,103 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 21:14:55] 2025-11-25 02:14:08,103 | INFO     | pilot state: finished 
[2025-11-24 21:14:55] 2025-11-25 02:14:08,103 | INFO     | transexitcode: 0
[2025-11-24 21:14:55] 2025-11-25 02:14:08,103 | INFO     | exeerrorcode: 0
[2025-11-24 21:14:55] 2025-11-25 02:14:08,103 | INFO     | exeerrordiag: 
[2025-11-24 21:14:55] 2025-11-25 02:14:08,104 | INFO     | exitcode: 0
[2025-11-24 21:14:55] 2025-11-25 02:14:08,104 | INFO     | exitmsg: OK
[2025-11-24 21:14:55] 2025-11-25 02:14:08,104 | INFO     | cpuconsumptiontime: 528594 s
[2025-11-24 21:14:55] 2025-11-25 02:14:08,104 | INFO     | nevents: 1000
[2025-11-24 21:14:55] 2025-11-25 02:14:08,104 | INFO     | neventsw: 0
[2025-11-24 21:14:55] 2025-11-25 02:14:08,104 | INFO     | pid: 19540
[2025-11-24 21:14:55] 2025-11-25 02:14:08,104 | INFO     | pgrp: 19540
[2025-11-24 21:14:55] 2025-11-25 02:14:08,104 | INFO     | corecount: 8
[2025-11-24 21:14:55] 2025-11-25 02:14:08,104 | INFO     | event service: False
[2025-11-24 21:14:55] 2025-11-25 02:14:08,105 | INFO     | sizes: {0: 2298756, 4: 2299018, 11: 2299046, 68509: 2354995, 68512: 2364780, 68513: 2364836, 68516: 2365306}
[2025-11-24 21:14:55] 2025-11-25 02:14:08,105 | INFO     | --------------------------------------------------
[2025-11-24 21:14:55] 2025-11-25 02:14:08,105 | INFO     | 
[2025-11-24 21:14:55] 2025-11-25 02:14:08,105 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-24 21:14:55] 2025-11-25 02:14:08,118 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 21:14:55] 2025-11-25 02:14:08,119 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 21:14:55] 2025-11-25 02:14:08,119 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 21:14:55] 2025-11-25 02:14:08,119 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 21:14:55] 2025-11-25 02:14:08,119 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 21:14:55] 2025-11-25 02:14:08,119 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 21:14:55] 2025-11-25 02:14:08,119 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 21:14:55] 2025-11-25 02:14:08,119 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 21:14:55] 2025-11-25 02:14:08,119 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 21:14:55] 2025-11-25 02:14:08,119 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 21:14:55] 2025-11-25 02:14:08,120 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 21:14:55] 2025-11-25 02:14:08,120 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 21:14:55] 2025-11-25 02:14:08,120 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 21:14:55] 2025-11-25 02:14:08,120 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 21:14:55] 2025-11-25 02:14:08,120 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 21:14:55] 2025-11-25 02:14:08,120 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 21:14:55] 2025-11-25 02:14:08,120 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 21:14:55] 2025-11-25 02:14:08,120 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 21:14:55] 2025-11-25 02:14:08,120 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 21:14:55] 2025-11-25 02:14:08,121 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 21:14:55] 2025-11-25 02:14:08,121 | INFO     | job 6895355980 has completed (purged errors)
[2025-11-24 21:14:55] 2025-11-25 02:14:08,121 | INFO     | overall cleanup function is called
[2025-11-24 21:14:55] 2025-11-25 02:14:09,133 | INFO     | --- collectZombieJob: --- 10, [19540]
[2025-11-24 21:14:55] 2025-11-25 02:14:09,133 | INFO     | zombie collector waiting for pid 19540
[2025-11-24 21:14:55] 2025-11-25 02:14:09,133 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 21:14:55] 2025-11-25 02:14:09,133 | INFO     | collected zombie processes
[2025-11-24 21:14:55] 2025-11-25 02:14:09,133 | INFO     | will attempt to kill all subprocesses of pid=19540
[2025-11-24 21:14:55] 2025-11-25 02:14:09,245 | INFO     | process IDs to be killed: [19540] (in reverse order)
[2025-11-24 21:14:55] 2025-11-25 02:14:09,282 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 21:14:55] 2025-11-25 02:14:09,282 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 21:14:55] 2025-11-25 02:14:09,285 | INFO     | did not find any defunct processes belonging to 19540
[2025-11-24 21:14:55] 2025-11-25 02:14:09,287 | INFO     | did not find any defunct processes belonging to 19540
[2025-11-24 21:14:55] 2025-11-25 02:14:09,289 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 21:14:55] 2025-11-25 02:14:09,289 | INFO     | ready for new job
[2025-11-24 21:14:55] 2025-11-25 02:14:09,289 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 21:14:55] 2025-11-25 02:14:09,293 | INFO     | ***************************************
[2025-11-24 21:14:55] 2025-11-25 02:14:09,293 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 21:14:55] 2025-11-25 02:14:09,294 | INFO     | ***************************************
[2025-11-24 21:14:55] 2025-11-25 02:14:09,294 | INFO     | 
[2025-11-24 21:14:55] 2025-11-25 02:14:09,294 | INFO     | architecture information:
[2025-11-24 21:14:55] 2025-11-25 02:14:09,295 | INFO     | executing command: cat /etc/os-release
[2025-11-24 21:14:55] 2025-11-25 02:14:09,305 | INFO     | cat /etc/os-release:
[2025-11-24 21:14:55] NAME="CentOS Linux"
[2025-11-24 21:14:55] VERSION="7 (Core)"
[2025-11-24 21:14:55] ID="centos"
[2025-11-24 21:14:55] ID_LIKE="rhel fedora"
[2025-11-24 21:14:55] VERSION_ID="7"
[2025-11-24 21:14:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 21:14:55] ANSI_COLOR="0;31"
[2025-11-24 21:14:55] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 21:14:55] HOME_URL="https://www.centos.org/"
[2025-11-24 21:14:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 21:14:55] 
[2025-11-24 21:14:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 21:14:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 21:14:55] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 21:14:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 21:14:55] 
[2025-11-24 21:14:55] 2025-11-25 02:14:09,305 | INFO     | ***************************************
[2025-11-24 21:14:55] 2025-11-25 02:14:09,808 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-24 21:14:55] 2025-11-25 02:14:09,927 | INFO     | sufficient remaining disk space (23934795776 B)
[2025-11-24 21:14:55] 2025-11-25 02:14:09,927 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 21:14:55] 2025-11-25 02:14:09,928 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 21:14:55] 2025-11-25 02:14:09,928 | INFO     | update_server=False
[2025-11-24 21:14:55] 2025-11-25 02:14:09,928 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 21:14:55] 2025-11-25 02:14:09,928 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 21:14:55] 2025-11-25 02:14:09,928 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 21:14:55] 2025-11-25 02:14:09,928 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 21:14:55] 2025-11-25 02:14:09,929 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-11-24 21:14:55] 2025-11-25 02:14:09,929 | INFO     | aborting loop
[2025-11-24 21:14:55] 2025-11-25 02:14:09,929 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 21:14:55] 2025-11-25 02:14:09,930 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 21:14:55] 2025-11-25 02:14:09,930 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 21:14:55] 2025-11-25 02:14:10,424 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 21:14:55] 2025-11-25 02:14:10,511 | INFO     | all data control threads have been joined
[2025-11-24 21:14:55] 2025-11-25 02:14:10,933 | INFO     | [job] retrieve thread has finished
[2025-11-24 21:14:55] 2025-11-25 02:14:10,934 | INFO     | [job] job monitor thread has finished
[2025-11-24 21:14:55] 2025-11-25 02:14:10,934 | INFO     | [job] queue monitor thread has finished
[2025-11-24 21:14:55] 2025-11-25 02:14:11,153 | INFO     | all payload control threads have been joined
[2025-11-24 21:14:55] 2025-11-25 02:14:11,284 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 21:14:55] 2025-11-25 02:14:11,290 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 21:14:55] 2025-11-25 02:14:11,477 | INFO     | [job] validate thread has finished
[2025-11-24 21:14:55] 2025-11-25 02:14:11,515 | INFO     | [data] control thread has finished
[2025-11-24 21:14:55] 2025-11-25 02:14:11,609 | INFO     | all job control threads have been joined
[2025-11-24 21:14:55] 2025-11-25 02:14:11,616 | INFO     | [payload] validate_post thread has finished
[2025-11-24 21:14:55] 2025-11-25 02:14:11,660 | INFO     | [payload] failed_post thread has finished
[2025-11-24 21:14:55] 2025-11-25 02:14:11,934 | INFO     | [data] copytool_out thread has finished
[2025-11-24 21:14:55] 2025-11-25 02:14:12,055 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 21:14:55] 2025-11-25 02:14:12,159 | INFO     | [payload] control thread has finished
[2025-11-24 21:14:55] 2025-11-25 02:14:12,261 | INFO     | [data] copytool_in thread has finished
[2025-11-24 21:14:55] 2025-11-25 02:14:12,425 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 21:14:55] 2025-11-25 02:14:12,614 | INFO     | [job] control thread has finished
[2025-11-24 21:14:55] 2025-11-25 02:14:14,430 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 21:14:55] 2025-11-25 02:14:49,845 | INFO     | [monitor] cgroup control has ended
[2025-11-24 21:14:55] 2025-11-25 02:14:50,397 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140252241028928)>', '<ExcThread(monitor, started 140251662108416)>']
[2025-11-24 21:14:55] 2025-11-25 02:14:51,117 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 21:14:55] 2025-11-25 02:14:51,117 | INFO     | [monitor] control thread has ended
[2025-11-24 21:14:55] 2025-11-25 02:14:55,423 | INFO     | all workflow threads have been joined
[2025-11-24 21:14:55] 2025-11-25 02:14:55,423 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 21:14:55] 2025-11-25 02:14:55,424 | INFO     | traces error code: 0
[2025-11-24 21:14:55] 2025-11-25 02:14:55,424 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 21:14:55] 2025-11-25 02:14:55,520 [wrapper] ==== pilot stdout END ====
[2025-11-24 21:14:55] 2025-11-25 02:14:55,522 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 21:14:55] 2025-11-25 02:14:55,524 [wrapper] pilotpid: 32275
[2025-11-24 21:14:55] 2025-11-25 02:14:55,526 [wrapper] Pilot exit status: 0
[2025-11-24 21:14:55] 2025-11-25 02:14:55,532 [wrapper] pandaids: 6895355980 6895355980
[2025-11-24 21:14:55] 2025-11-25 02:14:55,568 [wrapper] cleanup supervisor_pilot 17629 32277
[2025-11-24 21:14:55] 2025-11-25 02:14:55,571 [wrapper] Test setup, not cleaning
[2025-11-24 21:14:55] 2025-11-25 02:14:55,573 [wrapper] apfmon messages muted
[2025-11-24 21:14:55] 2025-11-25 02:14:55,575 [wrapper] ==== wrapper stdout END ====
[2025-11-24 21:14:55] 2025-11-25 02:14:55,577 [wrapper] ==== wrapper stderr END ====
[2025-11-24 21:14:55]  *** Error codes and diagnostics ***
[2025-11-24 21:14:55]     "exeErrorCode": 0,
[2025-11-24 21:14:55]     "exeErrorDiag": "",
[2025-11-24 21:14:55]     "pilotErrorCode": 0,
[2025-11-24 21:14:55]     "pilotErrorDiag": "",
[2025-11-24 21:14:55]  *** Listing of results directory ***
[2025-11-24 21:14:55] total 1718880
[2025-11-24 21:14:55] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-24 21:14:55] -rw-r--r-- 1 boincer umatlas    576529 Nov 23 04:19 pilot3.tar.gz
[2025-11-24 21:14:55] -rw-r--r-- 1 boincer umatlas      5112 Nov 23 04:42 queuedata.json
[2025-11-24 21:14:55] -rwx------ 1 boincer umatlas     36292 Nov 23 04:45 runpilot2-wrapper.sh
[2025-11-24 21:14:55] -rw-r--r-- 1 boincer umatlas       100 Nov 23 23:47 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 21:14:55] -rwxr-xr-x 1 boincer umatlas      7986 Nov 23 23:47 run_atlas
[2025-11-24 21:14:55] -rw-r--r-- 1 boincer umatlas       105 Nov 23 23:47 job.xml
[2025-11-24 21:14:55] -rw-r--r-- 3 boincer umatlas 409865327 Nov 23 23:47 EVNT.47483658._000682.pool.root.1
[2025-11-24 21:14:55] -rw-r--r-- 3 boincer umatlas 409865327 Nov 23 23:47 ATLAS.root_0
[2025-11-24 21:14:55] -rw-r--r-- 2 boincer umatlas     15847 Nov 23 23:47 start_atlas.sh
[2025-11-24 21:14:55] drwxrwx--x 2 boincer umatlas      4096 Nov 23 23:47 shared
[2025-11-24 21:14:55] -rw-r--r-- 2 boincer umatlas    590102 Nov 23 23:47 input.tar.gz
[2025-11-24 21:14:55] -rw-r--r-- 1 boincer umatlas         0 Nov 23 23:47 boinc_lockfile
[2025-11-24 21:14:55] -rw-r--r-- 1 boincer umatlas      2785 Nov 24 02:11 pandaJob.out
[2025-11-24 21:14:55] -rw------- 1 boincer umatlas        57 Nov 24 02:11 setup.sh.local
[2025-11-24 21:14:55] -rw------- 1 boincer umatlas    989786 Nov 24 02:11 agis_schedconf.cvmfs.json
[2025-11-24 21:14:55] -rw-r--r-- 1 boincer umatlas       533 Nov 24 21:03 boinc_task_state.xml
[2025-11-24 21:14:55] -rw-r--r-- 1 boincer umatlas      5953 Nov 24 21:10 init_data.xml
[2025-11-24 21:14:55] -rw------- 1 boincer umatlas 912912382 Nov 24 21:13 HITS.47556137._006775.pool.root.1
[2025-11-24 21:14:55] -rw------- 1 boincer umatlas        96 Nov 24 21:13 pilot_heartbeat.json
[2025-11-24 21:14:55] -rw------- 1 boincer umatlas      1065 Nov 24 21:13 memory_monitor_summary.json
[2025-11-24 21:14:55] -rw------- 1 boincer umatlas   1516227 Nov 24 21:14 agis_ddmendpoints.agis.ALL.json
[2025-11-24 21:14:55] -rw------- 1 boincer umatlas   2298477 Nov 24 21:14 log.47556137._006775.job.log.tgz.1
[2025-11-24 21:14:55] -rw------- 1 boincer umatlas      8661 Nov 24 21:14 heartbeat.json
[2025-11-24 21:14:55] -rw-r--r-- 1 boincer umatlas        29 Nov 24 21:14 wrapper_checkpoint.txt
[2025-11-24 21:14:55] -rw-r--r-- 1 boincer umatlas      8192 Nov 24 21:14 boinc_mmap_file
[2025-11-24 21:14:55] -rw------- 1 boincer umatlas      4552 Nov 24 21:14 pilotlog.txt
[2025-11-24 21:14:55] -rw------- 1 boincer umatlas   9488996 Nov 24 21:14 log.47556137._006775.job.log.1
[2025-11-24 21:14:55] -rw------- 1 boincer umatlas       353 Nov 24 21:14 output.list
[2025-11-24 21:14:55] -rw-r--r-- 1 boincer umatlas       620 Nov 24 21:14 runtime_log
[2025-11-24 21:14:55] -rw------- 1 boincer umatlas  11806720 Nov 24 21:14 result.tar.gz
[2025-11-24 21:14:55] -rw-r--r-- 1 boincer umatlas      9423 Nov 24 21:14 runtime_log.err
[2025-11-24 21:14:55] -rw------- 1 boincer umatlas       792 Nov 24 21:14 ceINDm1pLh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmxUIKDmGD75qm.diag
[2025-11-24 21:14:55] -rw-r--r-- 1 boincer umatlas     23392 Nov 24 21:14 stderr.txt
[2025-11-24 21:14:55] HITS file was successfully produced:
[2025-11-24 21:14:55] -rw------- 1 boincer umatlas 912912382 Nov 24 21:13 shared/HITS.pool.root.1
[2025-11-24 21:14:55]  *** Contents of shared directory: ***
[2025-11-24 21:14:55] total 1303908
[2025-11-24 21:14:55] -rw-r--r-- 3 boincer umatlas 409865327 Nov 23 23:47 ATLAS.root_0
[2025-11-24 21:14:55] -rw-r--r-- 2 boincer umatlas     15847 Nov 23 23:47 start_atlas.sh
[2025-11-24 21:14:55] -rw-r--r-- 2 boincer umatlas    590102 Nov 23 23:47 input.tar.gz
[2025-11-24 21:14:55] -rw------- 1 boincer umatlas 912912382 Nov 24 21:13 HITS.pool.root.1
[2025-11-24 21:14:55] -rw------- 1 boincer umatlas  11806720 Nov 24 21:14 result.tar.gz
21:14:57 (20393): run_atlas exited; CPU time 527750.588897
21:14:57 (20393): called boinc_finish(0)

</stderr_txt>
]]>

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