Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:02:49 (3851490): wrapper (7.7.26015): starting
00:02:49 (3851490): wrapper: running run_atlas (--nthreads 12)
[2025-11-24 00:02:49] Arguments: --nthreads 12
[2025-11-24 00:02:49] Threads: 12
[2025-11-24 00:02:49] Checking for CVMFS
[2025-11-24 00:02:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 00:02:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 00:02:51] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 00:02:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 00:02:52] 2.13.2.0 6384 31112 282744 153233 1 159 23037606 40960001 10401 16776704 0 31250288 99.772 17951280 35650 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-24 00:02:52] CVMFS is ok
[2025-11-24 00:02:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 00:02:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 00:02:52] Further information can be found at the LHC@home message board.
[2025-11-24 00:02:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 00:02:52] Checking for apptainer binary...
[2025-11-24 00:02:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 00:02:52] Running /usr/bin/apptainer --version
[2025-11-24 00:02:52] apptainer version 1.4.4-1.el9
[2025-11-24 00:02:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 00:02:53] c-210-33-2.aglt2.org
[2025-11-24 00:02:53] apptainer works
[2025-11-24 00:02:53] Set ATHENA_PROC_NUMBER=12
[2025-11-24 00:02:53] Set ATHENA_CORE_NUMBER=12
[2025-11-24 00:02:53] Starting ATLAS job with PandaID=6894052251
[2025-11-24 00:02:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 14:47:51]  *** The last 200 lines of the pilot log: ***
[2025-11-24 14:47:51] 2025-11-24 19:23:17,250 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 14:47:51] 2025-11-24 19:23:18,340 | INFO     | time since job start (51563s) is within the limit (172800.0s)
[2025-11-24 14:47:51] 2025-11-24 19:23:19,755 | INFO     | monitor loop #3008: job 0:6894052251 is in state 'finished'
[2025-11-24 14:47:51] 2025-11-24 19:23:19,755 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 14:47:51] 2025-11-24 19:23:20,339 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-24 14:47:51] 2025-11-24 19:23:20,343 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2646.1846964285714
[2025-11-24 14:47:51] 2025-11-24 19:23:20,354 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6894052251/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 14:47:51] 2025-11-24 19:23:20,356 | INFO     | extracted standard info from prmon json
[2025-11-24 14:47:51] 2025-11-24 19:23:20,356 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 14:47:51] 2025-11-24 19:23:20,356 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 14:47:51] 2025-11-24 19:23:20,357 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-24 14:47:51] 2025-11-24 19:23:20,357 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-24 14:47:51] 2025-11-24 19:23:20,373 | INFO     | fitting pss+swap vs Time
[2025-11-24 14:47:51] 2025-11-24 19:23:20,375 | INFO     | sum of square deviations: 185757809656.09506
[2025-11-24 14:47:51] 2025-11-24 19:23:20,385 | INFO     | time since job start (51565s) is within the limit (172800.0s)
[2025-11-24 14:47:51] 2025-11-24 19:23:20,397 | INFO     | sum of deviations: 504924200199.4862
[2025-11-24 14:47:51] 2025-11-24 19:23:20,398 | INFO     | mean x: 1763986449.4721234
[2025-11-24 14:47:51] 2025-11-24 19:23:20,398 | INFO     | mean y: 2775956.169632266
[2025-11-24 14:47:51] 2025-11-24 19:23:20,398 | INFO     | intersect: -4792066579.9876
[2025-11-24 14:47:51] 2025-11-24 19:23:20,403 | INFO     | chi2: 3.150753398534261
[2025-11-24 14:47:51] 2025-11-24 19:23:20,404 | INFO     | sum of square deviations: 182472349797.69473
[2025-11-24 14:47:51] 2025-11-24 19:23:20,430 | INFO     | sum of deviations: 561203043611.103
[2025-11-24 14:47:51] 2025-11-24 19:23:20,430 | INFO     | mean x: 1763986296.980907
[2025-11-24 14:47:51] 2025-11-24 19:23:20,430 | INFO     | mean y: 2778554.943914081
[2025-11-24 14:47:51] 2025-11-24 19:23:20,431 | INFO     | intersect: -5422451513.345976
[2025-11-24 14:47:51] 2025-11-24 19:23:20,436 | INFO     | chi2: 2.446046316705943
[2025-11-24 14:47:51] 2025-11-24 19:23:20,436 | INFO     | current chi2=2.446046316705943 (change=22.366303949910822 %)
[2025-11-24 14:47:51] 2025-11-24 19:23:20,436 | INFO     | right removable region: 837
[2025-11-24 14:47:51] 2025-11-24 19:23:20,437 | INFO     | sum of square deviations: 182471643968.65512
[2025-11-24 14:47:51] 2025-11-24 19:23:20,467 | INFO     | sum of deviations: 306519183415.4053
[2025-11-24 14:47:51] 2025-11-24 19:23:20,467 | INFO     | mean x: 1763986601.9797137
[2025-11-24 14:47:51] 2025-11-24 19:23:20,467 | INFO     | mean y: 2785147.4355608593
[2025-11-24 14:47:51] 2025-11-24 19:23:20,467 | INFO     | intersect: -2960391601.755222
[2025-11-24 14:47:51] 2025-11-24 19:23:20,468 | INFO     | chi2: 1.146685376598523
[2025-11-24 14:47:51] 2025-11-24 19:23:20,469 | INFO     | current chi2=1.146685376598523 (change=63.60599413676855 %)
[2025-11-24 14:47:51] 2025-11-24 19:23:20,470 | INFO     | sum of square deviations: 179224506998.09128
[2025-11-24 14:47:51] 2025-11-24 19:23:20,499 | INFO     | sum of deviations: 272680952300.73764
[2025-11-24 14:47:51] 2025-11-24 19:23:20,499 | INFO     | mean x: 1763986754.4861944
[2025-11-24 14:47:51] 2025-11-24 19:23:20,499 | INFO     | mean y: 2786734.5858343337
[2025-11-24 14:47:51] 2025-11-24 19:23:20,499 | INFO     | intersect: -2681029201.7264113
[2025-11-24 14:47:51] 2025-11-24 19:23:20,500 | INFO     | chi2: 1.1041663539934832
[2025-11-24 14:47:51] 2025-11-24 19:23:20,500 | INFO     | current chi2=1.1041663539934832 (change=3.707993794354156 %)
[2025-11-24 14:47:51] 2025-11-24 19:23:20,500 | INFO     | left removable region: 20
[2025-11-24 14:47:51] 2025-11-24 19:23:20,505 | INFO     | sum of square deviations: 169093521074.18127
[2025-11-24 14:47:51] 2025-11-24 19:23:20,530 | INFO     | sum of deviations: 194753554426.2997
[2025-11-24 14:47:51] 2025-11-24 19:23:20,530 | INFO     | mean x: 1763986876.5091798
[2025-11-24 14:47:51] 2025-11-24 19:23:20,530 | INFO     | mean y: 2795906.6266829865
[2025-11-24 14:47:51] 2025-11-24 19:23:20,530 | INFO     | intersect: -2028876933.2262228
[2025-11-24 14:47:51] 2025-11-24 19:23:20,535 | INFO     | chi2: 0.02944300077686854
[2025-11-24 14:47:51] 2025-11-24 19:23:20,536 | INFO     | current memory leak: 1.15 B/s (using 817 data points, chi2=0.03)
[2025-11-24 14:47:51] 2025-11-24 19:23:20,537 | INFO     | could have reported an average CPU frequency of 2788 MHz (31 samples)
[2025-11-24 14:47:51] 2025-11-24 19:23:20,537 | INFO     | ..............................
[2025-11-24 14:47:51] 2025-11-24 19:23:20,537 | INFO     | . Timing measurements:
[2025-11-24 14:47:51] 2025-11-24 19:23:20,537 | INFO     | . get job = 0 s
[2025-11-24 14:47:51] 2025-11-24 19:23:20,537 | INFO     | . initial setup = 4 s
[2025-11-24 14:47:51] 2025-11-24 19:23:20,537 | INFO     | . payload setup = 37 s
[2025-11-24 14:47:51] 2025-11-24 19:23:20,537 | INFO     | . stage-in = 0 s
[2025-11-24 14:47:51] 2025-11-24 19:23:20,537 | INFO     | . payload execution = 51429 s
[2025-11-24 14:47:51] 2025-11-24 19:23:20,537 | INFO     | . stage-out = 3 s
[2025-11-24 14:47:51] 2025-11-24 19:23:20,537 | INFO     | . log creation = 0 s
[2025-11-24 14:47:51] 2025-11-24 19:23:20,538 | INFO     | ..............................
[2025-11-24 14:47:51] 2025-11-24 19:23:20,716 | INFO     | 
[2025-11-24 14:47:51] 2025-11-24 19:23:20,716 | INFO     | job summary report
[2025-11-24 14:47:51] 2025-11-24 19:23:20,716 | INFO     | --------------------------------------------------
[2025-11-24 14:47:51] 2025-11-24 19:23:20,716 | INFO     | PanDA job id: 6894052251
[2025-11-24 14:47:51] 2025-11-24 19:23:20,717 | INFO     | task id: 47523650
[2025-11-24 14:47:51] 2025-11-24 19:23:20,717 | INFO     | errors: (none)
[2025-11-24 14:47:51] 2025-11-24 19:23:20,717 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 14:47:51] 2025-11-24 19:23:20,717 | INFO     | pilot state: finished 
[2025-11-24 14:47:51] 2025-11-24 19:23:20,717 | INFO     | transexitcode: 0
[2025-11-24 14:47:51] 2025-11-24 19:23:20,717 | INFO     | exeerrorcode: 0
[2025-11-24 14:47:51] 2025-11-24 19:23:20,717 | INFO     | exeerrordiag: 
[2025-11-24 14:47:51] 2025-11-24 19:23:20,717 | INFO     | exitcode: 0
[2025-11-24 14:47:51] 2025-11-24 19:23:20,717 | INFO     | exitmsg: OK
[2025-11-24 14:47:51] 2025-11-24 19:23:20,717 | INFO     | cpuconsumptiontime: 113653 s
[2025-11-24 14:47:51] 2025-11-24 19:23:20,717 | INFO     | nevents: 400
[2025-11-24 14:47:51] 2025-11-24 19:23:20,717 | INFO     | neventsw: 0
[2025-11-24 14:47:51] 2025-11-24 19:23:20,717 | INFO     | pid: 3870153
[2025-11-24 14:47:51] 2025-11-24 19:23:20,717 | INFO     | pgrp: 3870153
[2025-11-24 14:47:51] 2025-11-24 19:23:20,717 | INFO     | corecount: 12
[2025-11-24 14:47:51] 2025-11-24 19:23:20,717 | INFO     | event service: False
[2025-11-24 14:47:51] 2025-11-24 19:23:20,718 | INFO     | sizes: {0: 2298231, 1: 2298430, 2: 2298430, 13: 2298458, 23: 2298514, 30: 2298804, 34: 2298960, 51467: 2346633, 51468: 2346632, 51472: 2356477, 51475: 2356533, 515
[2025-11-24 14:47:51] 2025-11-24 19:23:20,718 | INFO     | --------------------------------------------------
[2025-11-24 14:47:51] 2025-11-24 19:23:20,718 | INFO     | 
[2025-11-24 14:47:51] 2025-11-24 19:23:20,718 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-24 14:47:51] 2025-11-24 19:23:20,754 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 14:47:51] 2025-11-24 19:23:20,755 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 14:47:51] 2025-11-24 19:23:20,755 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 14:47:51] 2025-11-24 19:23:20,755 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 14:47:51] 2025-11-24 19:23:20,755 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 14:47:51] 2025-11-24 19:23:20,755 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 14:47:51] 2025-11-24 19:23:20,755 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 14:47:51] 2025-11-24 19:23:20,755 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 14:47:51] 2025-11-24 19:23:20,755 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 14:47:51] 2025-11-24 19:23:20,755 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 14:47:51] 2025-11-24 19:23:20,755 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 14:47:51] 2025-11-24 19:23:20,755 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 14:47:51] 2025-11-24 19:23:20,755 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 14:47:51] 2025-11-24 19:23:20,755 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 14:47:51] 2025-11-24 19:23:20,756 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 14:47:51] 2025-11-24 19:23:20,756 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 14:47:51] 2025-11-24 19:23:20,756 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 14:47:51] 2025-11-24 19:23:20,756 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 14:47:51] 2025-11-24 19:23:20,756 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 14:47:51] 2025-11-24 19:23:20,756 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 14:47:51] 2025-11-24 19:23:20,756 | INFO     | job 6894052251 has completed (purged errors)
[2025-11-24 14:47:51] 2025-11-24 19:23:20,756 | INFO     | overall cleanup function is called
[2025-11-24 14:47:51] 2025-11-24 19:23:21,787 | INFO     | --- collectZombieJob: --- 10, [3870153]
[2025-11-24 14:47:51] 2025-11-24 19:23:21,787 | INFO     | zombie collector waiting for pid 3870153
[2025-11-24 14:47:51] 2025-11-24 19:23:21,787 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 14:47:51] 2025-11-24 19:23:21,787 | INFO     | collected zombie processes
[2025-11-24 14:47:51] 2025-11-24 19:23:21,788 | INFO     | will attempt to kill all subprocesses of pid=3870153
[2025-11-24 14:47:51] 2025-11-24 19:23:22,863 | INFO     | PID=3856290 has CPU usage=4.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 14:47:51] 2025-11-24 19:23:22,863 | INFO     | .. there are 12 such processes running
[2025-11-24 14:47:51] 2025-11-24 19:23:22,938 | INFO     | process IDs to be killed: [3870153] (in reverse order)
[2025-11-24 14:47:51] 2025-11-24 19:23:23,165 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 14:47:51] 2025-11-24 19:23:23,166 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 14:47:51] 2025-11-24 19:23:23,190 | INFO     | did not find any defunct processes belonging to 3870153
[2025-11-24 14:47:51] 2025-11-24 19:23:23,212 | INFO     | did not find any defunct processes belonging to 3870153
[2025-11-24 14:47:51] 2025-11-24 19:23:23,218 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 14:47:51] 2025-11-24 19:23:23,218 | INFO     | ready for new job
[2025-11-24 14:47:51] 2025-11-24 19:23:23,219 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 14:47:51] 2025-11-24 19:23:23,228 | INFO     | ***************************************
[2025-11-24 14:47:51] 2025-11-24 19:23:23,228 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 14:47:51] 2025-11-24 19:23:23,228 | INFO     | ***************************************
[2025-11-24 14:47:51] 2025-11-24 19:23:23,228 | INFO     | 
[2025-11-24 14:47:51] 2025-11-24 19:23:23,236 | INFO     | architecture information:
[2025-11-24 14:47:51] 2025-11-24 19:23:23,240 | INFO     | executing command: cat /etc/os-release
[2025-11-24 14:47:51] 2025-11-24 19:23:23,293 | INFO     | cat /etc/os-release:
[2025-11-24 14:47:51] NAME="CentOS Linux"
[2025-11-24 14:47:51] VERSION="7 (Core)"
[2025-11-24 14:47:51] ID="centos"
[2025-11-24 14:47:51] ID_LIKE="rhel fedora"
[2025-11-24 14:47:51] VERSION_ID="7"
[2025-11-24 14:47:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 14:47:51] ANSI_COLOR="0;31"
[2025-11-24 14:47:51] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 14:47:51] HOME_URL="https://www.centos.org/"
[2025-11-24 14:47:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 14:47:51] 
[2025-11-24 14:47:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 14:47:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 14:47:51] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 14:47:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 14:47:51] 
[2025-11-24 14:47:51] 2025-11-24 19:23:23,294 | INFO     | ***************************************
[2025-11-24 14:47:51] 2025-11-24 19:23:23,796 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-24 14:47:51] 2025-11-24 19:23:23,877 | INFO     | sufficient remaining disk space (69804752896 B)
[2025-11-24 14:47:51] 2025-11-24 19:23:23,878 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 14:47:51] 2025-11-24 19:23:23,878 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 14:47:51] 2025-11-24 19:23:23,878 | INFO     | update_server=False
[2025-11-24 14:47:51] 2025-11-24 19:23:23,878 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 14:47:51] 2025-11-24 19:23:23,878 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 14:47:51] 2025-11-24 19:23:23,879 | INFO     | aborting loop
[2025-11-24 14:47:51] 2025-11-24 19:23:24,065 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 14:47:51] 2025-11-24 19:23:24,865 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 14:47:51] 2025-11-24 19:23:24,884 | INFO     | [job] retrieve thread has finished
[2025-11-24 14:47:51] 2025-11-24 19:23:24,884 | INFO     | [job] job monitor thread has finished
[2025-11-24 14:47:51] 2025-11-24 19:23:24,886 | INFO     | all job control threads have been joined
[2025-11-24 14:47:51] 2025-11-24 19:23:24,902 | INFO     | all payload control threads have been joined
[2025-11-24 14:47:51] 2025-11-24 19:23:24,935 | INFO     | all data control threads have been joined
[2025-11-24 14:47:51] 2025-11-24 19:23:25,109 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 14:47:51] 2025-11-24 19:23:25,157 | INFO     | [job] validate thread has finished
[2025-11-24 14:47:51] 2025-11-24 19:23:25,158 | INFO     | [data] copytool_in thread has finished
[2025-11-24 14:47:51] 2025-11-24 19:23:25,271 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 14:47:51] 2025-11-24 19:23:25,337 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 14:47:51] 2025-11-24 19:23:25,751 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 14:47:51] 2025-11-24 19:23:25,861 | INFO     | [payload] validate_post thread has finished
[2025-11-24 14:47:51] 2025-11-24 19:23:25,891 | INFO     | [job] control thread has finished
[2025-11-24 14:47:51] 2025-11-24 19:23:25,908 | INFO     | [payload] control thread has finished
[2025-11-24 14:47:51] 2025-11-24 19:23:25,941 | INFO     | [data] control thread has finished
[2025-11-24 14:47:51] 2025-11-24 19:23:26,007 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 14:47:51] 2025-11-24 19:23:26,055 | INFO     | [payload] failed_post thread has finished
[2025-11-24 14:47:51] 2025-11-24 19:23:26,756 | INFO     | [job] queue monitor thread has finished
[2025-11-24 14:47:51] 2025-11-24 19:23:26,872 | INFO     | [data] copytool_out thread has finished
[2025-11-24 14:47:51] 2025-11-24 19:23:28,074 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 14:47:51] 2025-11-24 19:23:32,318 | INFO     | [monitor] cgroup control has ended
[2025-11-24 14:47:51] 2025-11-24 19:23:33,695 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139822169507648)>', '<ExcThread(monitor, started 139821309748992)>']
[2025-11-24 14:47:51] 2025-11-24 19:23:38,720 | INFO     | all workflow threads have been joined
[2025-11-24 14:47:51] 2025-11-24 19:23:38,720 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 14:47:51] 2025-11-24 19:23:38,720 | INFO     | traces error code: 0
[2025-11-24 14:47:51] 2025-11-24 19:23:38,721 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 14:47:51] 2025-11-24 19:23:55,765 | INFO     | PID=3856290 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 14:47:51] 2025-11-24 19:23:55,766 | INFO     | .. there are 12 such processes running
[2025-11-24 14:47:51] 2025-11-24 19:23:55,766 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 14:47:51] 2025-11-24 19:23:55,767 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 14:47:51] 2025-11-24 19:23:55,767 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 14:47:51] 2025-11-24 19:23:55,767 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 14:47:51] 2025-11-24 19:23:55,767 | CRITICAL | thread 'MainThread' is not alive
[2025-11-24 14:47:51] 2025-11-24 19:23:55,767 | INFO     | [monitor] control thread has ended
[2025-11-24 14:47:51] 2025-11-24 19:23:56,211 [wrapper] ==== pilot stdout END ====
[2025-11-24 14:47:51] 2025-11-24 19:23:56,234 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 14:47:51] 2025-11-24 19:23:56,252 [wrapper] pilotpid: 3856290
[2025-11-24 14:47:51] 2025-11-24 19:23:56,291 [wrapper] Pilot exit status: 0
[2025-11-24 14:47:51] 2025-11-24 19:23:56,413 [wrapper] pandaids: 6894052251
[2025-11-24 14:47:51] 2025-11-24 19:23:56,715 [wrapper] cleanup supervisor_pilot 1033501 3856291
[2025-11-24 14:47:51] 2025-11-24 19:23:56,726 [wrapper] Test setup, not cleaning
[2025-11-24 14:47:51] 2025-11-24 19:23:56,739 [wrapper] apfmon messages muted
[2025-11-24 14:47:51] 2025-11-24 19:23:56,754 [wrapper] ==== wrapper stdout END ====
[2025-11-24 14:47:51] 2025-11-24 19:23:56,769 [wrapper] ==== wrapper stderr END ====
[2025-11-24 14:47:51]  *** Error codes and diagnostics ***
[2025-11-24 14:47:51]     "exeErrorCode": 0,
[2025-11-24 14:47:51]     "exeErrorDiag": "",
[2025-11-24 14:47:51]     "pilotErrorCode": 0,
[2025-11-24 14:47:51]     "pilotErrorDiag": "",
[2025-11-24 14:47:51]  *** Listing of results directory ***
[2025-11-24 14:47:51] total 636972
[2025-11-24 14:47:51] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 04:19 pilot3.tar.gz
[2025-11-24 14:47:51] -rwx------. 1 boincer umatlas     36292 Nov 23 04:33 runpilot2-wrapper.sh
[2025-11-24 14:47:51] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 04:33 queuedata.json
[2025-11-24 14:47:51] -rw-r--r--. 1 boincer umatlas       100 Nov 24 00:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 14:47:51] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 00:02 run_atlas
[2025-11-24 14:47:51] -rw-r--r--. 1 boincer umatlas       105 Nov 24 00:02 job.xml
[2025-11-24 14:47:51] -rw-r--r--. 2 boincer umatlas 297970808 Nov 24 00:02 EVNT.47523648._000004.pool.root.1
[2025-11-24 14:47:51] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 00:02 start_atlas.sh
[2025-11-24 14:47:51] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 00:02 shared
[2025-11-24 14:47:51] -rw-r--r--. 2 boincer umatlas    589953 Nov 24 00:02 input.tar.gz
[2025-11-24 14:47:51] -rw-r--r--. 1 boincer umatlas         0 Nov 24 00:02 boinc_lockfile
[2025-11-24 14:47:51] -rw-r--r--. 1 boincer umatlas      2623 Nov 24 00:02 pandaJob.out
[2025-11-24 14:47:51] -rw-------. 1 boincer umatlas        57 Nov 24 00:02 setup.sh.local
[2025-11-24 14:47:51] -rw-------. 1 boincer umatlas    989786 Nov 24 00:03 agis_schedconf.cvmfs.json
[2025-11-24 14:47:51] drwx------. 5 boincer umatlas      4096 Nov 24 00:03 pilot3
[2025-11-24 14:47:51] -rw-------. 1 boincer umatlas 335876722 Nov 24 14:21 HITS.47523650._000099.pool.root.1
[2025-11-24 14:47:51] -rw-r--r--. 1 boincer umatlas       532 Nov 24 14:21 boinc_task_state.xml
[2025-11-24 14:47:51] -rw-------. 1 boincer umatlas      1044 Nov 24 14:22 memory_monitor_summary.json
[2025-11-24 14:47:51] -rw-------. 1 boincer umatlas   1516227 Nov 24 14:22 agis_ddmendpoints.agis.ALL.json
[2025-11-24 14:47:51] -rw-------. 1 boincer umatlas    993506 Nov 24 14:22 log.47523650._000099.job.log.tgz.1
[2025-11-24 14:47:51] -rw-------. 1 boincer umatlas      7825 Nov 24 14:23 heartbeat.json
[2025-11-24 14:47:51] -rw-------. 1 boincer umatlas        95 Nov 24 14:23 pilot_heartbeat.json
[2025-11-24 14:47:51] -rw-------. 1 boincer umatlas       893 Nov 24 14:23 pilotlog.txt
[2025-11-24 14:47:51] -rw-------. 1 boincer umatlas   6261780 Nov 24 14:23 log.47523650._000099.job.log.1
[2025-11-24 14:47:51] -rw-------. 1 boincer umatlas       357 Nov 24 14:23 output.list
[2025-11-24 14:47:51] -rw-r--r--. 1 boincer umatlas       620 Nov 24 14:23 runtime_log
[2025-11-24 14:47:51] -rw-------. 1 boincer umatlas   7270400 Nov 24 14:23 result.tar.gz
[2025-11-24 14:47:51] -rw-r--r--. 1 boincer umatlas      9355 Nov 24 14:23 runtime_log.err
[2025-11-24 14:47:51] -rw-------. 1 boincer umatlas       661 Nov 24 14:23 64qLDmCeLh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmBmKKDmhyDAtn.diag
[2025-11-24 14:47:51] -rw-r--r--. 1 boincer umatlas        29 Nov 24 14:47 wrapper_checkpoint.txt
[2025-11-24 14:47:51] -rw-r--r--. 1 boincer umatlas      6841 Nov 24 14:47 init_data.xml
[2025-11-24 14:47:51] -rw-r--r--. 1 boincer umatlas      8192 Nov 24 14:47 boinc_mmap_file
[2025-11-24 14:47:51] -rw-r--r--. 1 boincer umatlas     21601 Nov 24 14:47 stderr.txt
[2025-11-24 14:47:51] HITS file was successfully produced:
[2025-11-24 14:47:51] -rw-------. 1 boincer umatlas 335876722 Nov 24 14:21 shared/HITS.pool.root.1
[2025-11-24 14:47:51]  *** Contents of shared directory: ***
[2025-11-24 14:47:51] total 626696
[2025-11-24 14:47:51] -rw-r--r--. 2 boincer umatlas 297970808 Nov 24 00:02 ATLAS.root_0
[2025-11-24 14:47:51] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 00:02 start_atlas.sh
[2025-11-24 14:47:51] -rw-r--r--. 2 boincer umatlas    589953 Nov 24 00:02 input.tar.gz
[2025-11-24 14:47:51] -rw-------. 1 boincer umatlas 335876722 Nov 24 14:21 HITS.pool.root.1
[2025-11-24 14:47:51] -rw-------. 1 boincer umatlas   7270400 Nov 24 14:23 result.tar.gz
14:47:53 (3851490): run_atlas exited; CPU time 115060.877790
14:47:53 (3851490): called boinc_finish(0)

</stderr_txt>
]]>

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