Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:59 (872134): wrapper (7.7.26015): starting
00:01:59 (872134): wrapper: running run_atlas (--nthreads 12)
[2025-11-24 00:01:59] Arguments: --nthreads 12
[2025-11-24 00:01:59] Threads: 12
[2025-11-24 00:01:59] Checking for CVMFS
[2025-11-24 00:02:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 00:02:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 00:02:00] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 00:02:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 00:02:01] 2.13.2.0 8902 32516 289568 153233 3 417 27426018 40960001 23796 16776704 0 59885589 99.602 62745103 35288 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-24 00:02:01] CVMFS is ok
[2025-11-24 00:02:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 00:02:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 00:02:01] Further information can be found at the LHC@home message board.
[2025-11-24 00:02:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 00:02:01] Checking for apptainer binary...
[2025-11-24 00:02:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 00:02:01] Running /usr/bin/apptainer --version
[2025-11-24 00:02:02] apptainer version 1.4.4-1.el9
[2025-11-24 00:02:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 00:02:03] c-211-35-2.aglt2.org
[2025-11-24 00:02:03] apptainer works
[2025-11-24 00:02:03] Set ATHENA_PROC_NUMBER=12
[2025-11-24 00:02:03] Set ATHENA_CORE_NUMBER=12
[2025-11-24 00:02:03] Starting ATLAS job with PandaID=6895350631
[2025-11-24 00:02:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 18:04:54]  *** The last 200 lines of the pilot log: ***
[2025-11-24 18:04:55] 2025-11-24 22:59:55,372 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-24 18:04:55] 2025-11-24 22:59:55,396 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2582.238145833334
[2025-11-24 18:04:55] 2025-11-24 22:59:55,483 | INFO     | monitor loop #3402: job 0:6895350631 is in state 'finished'
[2025-11-24 18:04:55] 2025-11-24 22:59:55,484 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 18:04:55] 2025-11-24 22:59:55,672 | INFO     | using path: /tmp/boinchome/slots/7/PanDA_Pilot-6895350631/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 18:04:55] 2025-11-24 22:59:55,673 | INFO     | extracted standard info from prmon json
[2025-11-24 18:04:55] 2025-11-24 22:59:55,673 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 18:04:55] 2025-11-24 22:59:55,673 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 18:04:55] 2025-11-24 22:59:55,885 | INFO     | fitting pss+swap vs Time
[2025-11-24 18:04:55] 2025-11-24 22:59:55,887 | INFO     | sum of square deviations: 365126992172.632
[2025-11-24 18:04:55] 2025-11-24 22:59:56,050 | INFO     | sum of deviations: 4888707140726.723
[2025-11-24 18:04:55] 2025-11-24 22:59:56,050 | INFO     | mean x: 1763992921.5359848
[2025-11-24 18:04:55] 2025-11-24 22:59:56,050 | INFO     | mean y: 3531578.0729166665
[2025-11-24 18:04:55] 2025-11-24 22:59:56,050 | INFO     | intersect: -23614675173.47588
[2025-11-24 18:04:55] 2025-11-24 22:59:56,052 | INFO     | chi2: 9.361702157934229
[2025-11-24 18:04:55] 2025-11-24 22:59:56,053 | INFO     | sum of square deviations: 359967969126.63165
[2025-11-24 18:04:55] 2025-11-24 22:59:56,213 | INFO     | sum of deviations: 5325324792028.662
[2025-11-24 18:04:55] 2025-11-24 22:59:56,213 | INFO     | mean x: 1763992769.0837297
[2025-11-24 18:04:55] 2025-11-24 22:59:56,213 | INFO     | mean y: 3544481.390104662
[2025-11-24 18:04:55] 2025-11-24 22:59:56,213 | INFO     | intersect: -26092761945.408268
[2025-11-24 18:04:55] 2025-11-24 22:59:56,215 | INFO     | chi2: 6.1584851122340005
[2025-11-24 18:04:55] 2025-11-24 22:59:56,215 | INFO     | current chi2=6.1584851122340005 (change=34.21618196841948 %)
[2025-11-24 18:04:55] 2025-11-24 22:59:56,225 | INFO     | sum of square deviations: 354856677719.73376
[2025-11-24 18:04:55] 2025-11-24 22:59:56,257 | INFO     | time since job start (64607s) is within the limit (172800.0s)
[2025-11-24 18:04:55] 2025-11-24 22:59:56,330 | INFO     | sum of deviations: 5502872201091.313
[2025-11-24 18:04:55] 2025-11-24 22:59:56,330 | INFO     | mean x: 1763992616.6147227
[2025-11-24 18:04:55] 2025-11-24 22:59:56,341 | INFO     | mean y: 3549772.0057361377
[2025-11-24 18:04:55] 2025-11-24 22:59:56,341 | INFO     | intersect: -27351229051.026886
[2025-11-24 18:04:55] 2025-11-24 22:59:56,342 | INFO     | chi2: 5.321607530696817
[2025-11-24 18:04:55] 2025-11-24 22:59:56,343 | INFO     | current chi2=5.321607530696817 (change=13.589016881354521 %)
[2025-11-24 18:04:55] 2025-11-24 22:59:56,343 | INFO     | right removable region: 1045
[2025-11-24 18:04:55] 2025-11-24 22:59:56,352 | INFO     | sum of square deviations: 359961504346.6312
[2025-11-24 18:04:55] 2025-11-24 22:59:56,424 | INFO     | sum of deviations: 4383117623975.0728
[2025-11-24 18:04:55] 2025-11-24 22:59:56,425 | INFO     | mean x: 1763993074.0837297
[2025-11-24 18:04:55] 2025-11-24 22:59:56,425 | INFO     | mean y: 3546506.2264509993
[2025-11-24 18:04:55] 2025-11-24 22:59:56,425 | INFO     | intersect: -21475942378.620804
[2025-11-24 18:04:55] 2025-11-24 22:59:56,427 | INFO     | chi2: 5.498550356184257
[2025-11-24 18:04:55] 2025-11-24 22:59:56,427 | INFO     | current chi2=5.498550356184257 (change=41.26548502160875 %)
[2025-11-24 18:04:55] 2025-11-24 22:59:56,428 | INFO     | sum of square deviations: 354845284572.8416
[2025-11-24 18:04:55] 2025-11-24 22:59:56,504 | INFO     | sum of deviations: 4108768199486.32
[2025-11-24 18:04:55] 2025-11-24 22:59:56,504 | INFO     | mean x: 1763993226.626195
[2025-11-24 18:04:55] 2025-11-24 22:59:56,504 | INFO     | mean y: 3554677.5430210326
[2025-11-24 18:04:55] 2025-11-24 22:59:56,504 | INFO     | intersect: -20421795718.181793
[2025-11-24 18:04:55] 2025-11-24 22:59:56,505 | INFO     | chi2: 4.402335612529646
[2025-11-24 18:04:55] 2025-11-24 22:59:56,506 | INFO     | current chi2=4.402335612529646 (change=19.936431834650588 %)
[2025-11-24 18:04:55] 2025-11-24 22:59:56,506 | INFO     | left removable region: 20
[2025-11-24 18:04:55] 2025-11-24 22:59:56,515 | INFO     | sum of square deviations: 333900362352.0489
[2025-11-24 18:04:55] 2025-11-24 22:59:56,578 | INFO     | sum of deviations: 4482368503246.244
[2025-11-24 18:04:55] 2025-11-24 22:59:56,578 | INFO     | mean x: 1763993196.2536585
[2025-11-24 18:04:55] 2025-11-24 22:59:56,578 | INFO     | mean y: 3580821.2029268295
[2025-11-24 18:04:55] 2025-11-24 22:59:56,587 | INFO     | intersect: -23676739520.861988
[2025-11-24 18:04:55] 2025-11-24 22:59:56,588 | INFO     | chi2: 0.16862048753967349
[2025-11-24 18:04:55] 2025-11-24 22:59:56,589 | INFO     | current memory leak: 13.42 B/s (using 1025 data points, chi2=0.17)
[2025-11-24 18:04:55] 2025-11-24 22:59:56,590 | INFO     | could have reported an average CPU frequency of 2614 MHz (39 samples)
[2025-11-24 18:04:55] 2025-11-24 22:59:56,598 | INFO     | ..............................
[2025-11-24 18:04:55] 2025-11-24 22:59:56,599 | INFO     | . Timing measurements:
[2025-11-24 18:04:55] 2025-11-24 22:59:56,599 | INFO     | . get job = 0 s
[2025-11-24 18:04:55] 2025-11-24 22:59:56,599 | INFO     | . initial setup = 6 s
[2025-11-24 18:04:55] 2025-11-24 22:59:56,599 | INFO     | . payload setup = 46 s
[2025-11-24 18:04:55] 2025-11-24 22:59:56,599 | INFO     | . stage-in = 0 s
[2025-11-24 18:04:55] 2025-11-24 22:59:56,599 | INFO     | . payload execution = 64441 s
[2025-11-24 18:04:55] 2025-11-24 22:59:56,599 | INFO     | . stage-out = 17 s
[2025-11-24 18:04:55] 2025-11-24 22:59:56,599 | INFO     | . log creation = 1 s
[2025-11-24 18:04:55] 2025-11-24 22:59:56,599 | INFO     | ..............................
[2025-11-24 18:04:55] 2025-11-24 22:59:56,912 | INFO     | 
[2025-11-24 18:04:55] 2025-11-24 22:59:56,913 | INFO     | job summary report
[2025-11-24 18:04:55] 2025-11-24 22:59:56,913 | INFO     | --------------------------------------------------
[2025-11-24 18:04:55] 2025-11-24 22:59:56,913 | INFO     | PanDA job id: 6895350631
[2025-11-24 18:04:55] 2025-11-24 22:59:56,913 | INFO     | task id: 47556137
[2025-11-24 18:04:55] 2025-11-24 22:59:56,913 | INFO     | errors: (none)
[2025-11-24 18:04:55] 2025-11-24 22:59:56,913 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 18:04:55] 2025-11-24 22:59:56,913 | INFO     | pilot state: finished 
[2025-11-24 18:04:55] 2025-11-24 22:59:56,913 | INFO     | transexitcode: 0
[2025-11-24 18:04:55] 2025-11-24 22:59:56,913 | INFO     | exeerrorcode: 0
[2025-11-24 18:04:55] 2025-11-24 22:59:56,913 | INFO     | exeerrordiag: 
[2025-11-24 18:04:55] 2025-11-24 22:59:56,913 | INFO     | exitcode: 0
[2025-11-24 18:04:55] 2025-11-24 22:59:56,913 | INFO     | exitmsg: OK
[2025-11-24 18:04:55] 2025-11-24 22:59:56,914 | INFO     | cpuconsumptiontime: 265133 s
[2025-11-24 18:04:55] 2025-11-24 22:59:56,914 | INFO     | nevents: 1000
[2025-11-24 18:04:55] 2025-11-24 22:59:56,914 | INFO     | neventsw: 0
[2025-11-24 18:04:55] 2025-11-24 22:59:56,914 | INFO     | pid: 911128
[2025-11-24 18:04:55] 2025-11-24 22:59:56,914 | INFO     | pgrp: 911128
[2025-11-24 18:04:55] 2025-11-24 22:59:56,914 | INFO     | corecount: 12
[2025-11-24 18:04:55] 2025-11-24 22:59:56,914 | INFO     | event service: False
[2025-11-24 18:04:55] 2025-11-24 22:59:56,914 | INFO     | sizes: {0: 2297927, 1: 2298528, 2: 2298640, 3: 2298839, 15: 2298839, 26: 2298867, 33: 2299285, 37: 2299341, 64493: 2352355, 64494: 2352354, 64514: 2362195, 64516: 
[2025-11-24 18:04:55] 2025-11-24 22:59:56,914 | INFO     | --------------------------------------------------
[2025-11-24 18:04:55] 2025-11-24 22:59:56,914 | INFO     | 
[2025-11-24 18:04:55] 2025-11-24 22:59:56,914 | INFO     | executing command: ls -lF /tmp/boinchome/slots/7
[2025-11-24 18:04:55] 2025-11-24 22:59:56,990 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 18:04:55] 2025-11-24 22:59:56,990 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 18:04:55] 2025-11-24 22:59:56,990 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 18:04:55] 2025-11-24 22:59:56,990 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 18:04:55] 2025-11-24 22:59:56,991 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 18:04:55] 2025-11-24 22:59:56,991 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 18:04:55] 2025-11-24 22:59:56,991 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 18:04:55] 2025-11-24 22:59:56,991 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 18:04:55] 2025-11-24 22:59:56,991 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 18:04:55] 2025-11-24 22:59:56,991 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 18:04:55] 2025-11-24 22:59:56,991 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 18:04:55] 2025-11-24 22:59:56,991 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 18:04:55] 2025-11-24 22:59:56,991 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 18:04:55] 2025-11-24 22:59:56,991 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 18:04:55] 2025-11-24 22:59:56,991 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 18:04:55] 2025-11-24 22:59:56,992 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 18:04:55] 2025-11-24 22:59:56,992 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 18:04:55] 2025-11-24 22:59:56,992 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 18:04:55] 2025-11-24 22:59:56,992 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 18:04:55] 2025-11-24 22:59:56,992 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 18:04:55] 2025-11-24 22:59:56,992 | INFO     | job 6895350631 has completed (purged errors)
[2025-11-24 18:04:55] 2025-11-24 22:59:56,992 | INFO     | overall cleanup function is called
[2025-11-24 18:04:55] 2025-11-24 22:59:58,019 | INFO     | --- collectZombieJob: --- 10, [911128]
[2025-11-24 18:04:55] 2025-11-24 22:59:58,020 | INFO     | zombie collector waiting for pid 911128
[2025-11-24 18:04:55] 2025-11-24 22:59:58,020 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 18:04:55] 2025-11-24 22:59:58,020 | INFO     | collected zombie processes
[2025-11-24 18:04:55] 2025-11-24 22:59:58,020 | INFO     | will attempt to kill all subprocesses of pid=911128
[2025-11-24 18:04:55] 2025-11-24 23:00:00,775 | INFO     | process IDs to be killed: [911128] (in reverse order)
[2025-11-24 18:04:55] 2025-11-24 23:00:01,243 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 18:04:55] 2025-11-24 23:00:01,243 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 18:04:55] 2025-11-24 23:00:01,352 | INFO     | did not find any defunct processes belonging to 911128
[2025-11-24 18:04:55] 2025-11-24 23:00:01,535 | INFO     | did not find any defunct processes belonging to 911128
[2025-11-24 18:04:55] 2025-11-24 23:00:01,560 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 18:04:55] 2025-11-24 23:00:01,560 | INFO     | ready for new job
[2025-11-24 18:04:55] 2025-11-24 23:00:01,560 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 18:04:55] 2025-11-24 23:00:01,591 | INFO     | ***************************************
[2025-11-24 18:04:55] 2025-11-24 23:00:01,591 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 18:04:55] 2025-11-24 23:00:01,591 | INFO     | ***************************************
[2025-11-24 18:04:55] 2025-11-24 23:00:01,591 | INFO     | 
[2025-11-24 18:04:55] 2025-11-24 23:00:01,658 | INFO     | architecture information:
[2025-11-24 18:04:55] 2025-11-24 23:00:01,678 | INFO     | executing command: cat /etc/os-release
[2025-11-24 18:04:55] 2025-11-24 23:00:01,736 | INFO     | cat /etc/os-release:
[2025-11-24 18:04:55] NAME="CentOS Linux"
[2025-11-24 18:04:55] VERSION="7 (Core)"
[2025-11-24 18:04:55] ID="centos"
[2025-11-24 18:04:55] ID_LIKE="rhel fedora"
[2025-11-24 18:04:55] VERSION_ID="7"
[2025-11-24 18:04:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 18:04:55] ANSI_COLOR="0;31"
[2025-11-24 18:04:55] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 18:04:55] HOME_URL="https://www.centos.org/"
[2025-11-24 18:04:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 18:04:55] 
[2025-11-24 18:04:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 18:04:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 18:04:55] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 18:04:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 18:04:55] 
[2025-11-24 18:04:55] 2025-11-24 23:00:01,736 | INFO     | ***************************************
[2025-11-24 18:04:55] 2025-11-24 23:00:02,240 | INFO     | executing command: df -mP /tmp/boinchome/slots/7
[2025-11-24 18:04:55] 2025-11-24 23:00:02,307 | INFO     | sufficient remaining disk space (121081167872 B)
[2025-11-24 18:04:55] 2025-11-24 23:00:02,307 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 18:04:55] 2025-11-24 23:00:02,308 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 18:04:55] 2025-11-24 23:00:02,308 | INFO     | update_server=False
[2025-11-24 18:04:55] 2025-11-24 23:00:02,308 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 18:04:55] 2025-11-24 23:00:02,308 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 18:04:55] 2025-11-24 23:00:02,308 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 18:04:55] 2025-11-24 23:00:02,308 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 18:04:55] 2025-11-24 23:00:02,309 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 18:04:55] 2025-11-24 23:00:02,309 | INFO     | aborting loop
[2025-11-24 18:04:55] 2025-11-24 23:00:02,731 | INFO     | all data control threads have been joined
[2025-11-24 18:04:55] 2025-11-24 23:00:02,955 | INFO     | all payload control threads have been joined
[2025-11-24 18:04:55] 2025-11-24 23:00:03,143 | INFO     | all job control threads have been joined
[2025-11-24 18:04:55] 2025-11-24 23:00:03,314 | INFO     | [job] retrieve thread has finished
[2025-11-24 18:04:55] 2025-11-24 23:00:03,314 | INFO     | [job] queue monitor thread has finished
[2025-11-24 18:04:55] 2025-11-24 23:00:03,321 | INFO     | [job] job monitor thread has finished
[2025-11-24 18:04:55] 2025-11-24 23:00:03,456 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 18:04:55] 2025-11-24 23:00:03,463 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 18:04:55] 2025-11-24 23:00:03,470 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 18:04:55] 2025-11-24 23:00:03,738 | INFO     | [data] control thread has finished
[2025-11-24 18:04:55] 2025-11-24 23:00:03,895 | INFO     | [payload] failed_post thread has finished
[2025-11-24 18:04:55] 2025-11-24 23:00:03,962 | INFO     | [payload] control thread has finished
[2025-11-24 18:04:55] 2025-11-24 23:00:04,013 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 18:04:55] 2025-11-24 23:00:04,149 | INFO     | [job] control thread has finished
[2025-11-24 18:04:55] 2025-11-24 23:00:04,272 | INFO     | [job] validate thread has finished
[2025-11-24 18:04:55] 2025-11-24 23:00:04,335 | INFO     | [data] copytool_out thread has finished
[2025-11-24 18:04:55] 2025-11-24 23:00:04,432 | INFO     | [data] copytool_in thread has finished
[2025-11-24 18:04:55] 2025-11-24 23:00:04,747 | INFO     | [payload] validate_post thread has finished
[2025-11-24 18:04:55] 2025-11-24 23:00:06,335 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 18:04:55] 2025-11-24 23:00:09,558 | INFO     | [monitor] cgroup control has ended
[2025-11-24 18:04:55] 2025-11-24 23:00:09,881 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140154141579072)>', '<ExcThread(monitor, started 140153439909632)>']
[2025-11-24 18:04:55] 2025-11-24 23:00:14,907 | INFO     | all workflow threads have been joined
[2025-11-24 18:04:55] 2025-11-24 23:00:14,908 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 18:04:55] 2025-11-24 23:00:14,908 | INFO     | traces error code: 0
[2025-11-24 18:04:55] 2025-11-24 23:00:14,908 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 18:04:55] 2025-11-24 23:00:31,000 | INFO     | PID=882754 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-24 18:04:55] 2025-11-24 23:00:31,000 | INFO     | .. there are 25 such processes running
[2025-11-24 18:04:55] 2025-11-24 23:00:31,000 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 18:04:55] 2025-11-24 23:00:31,001 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 18:04:55] 2025-11-24 23:00:31,001 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 18:04:55] 2025-11-24 23:00:31,001 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 18:04:55] 2025-11-24 23:00:31,001 | INFO     | [monitor] control thread has ended
[2025-11-24 18:04:55] 2025-11-24 23:00:31,288 [wrapper] ==== pilot stdout END ====
[2025-11-24 18:04:55] 2025-11-24 23:00:31,298 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 18:04:55] 2025-11-24 23:00:31,315 [wrapper] pilotpid: 882754
[2025-11-24 18:04:55] 2025-11-24 23:00:31,332 [wrapper] Pilot exit status: 0
[2025-11-24 18:04:55] 2025-11-24 23:00:31,398 [wrapper] pandaids: 6895350631
[2025-11-24 18:04:55] 2025-11-24 23:00:31,886 [wrapper] cleanup supervisor_pilot 3224355 882757
[2025-11-24 18:04:55] 2025-11-24 23:00:31,920 [wrapper] Test setup, not cleaning
[2025-11-24 18:04:55] 2025-11-24 23:00:31,942 [wrapper] apfmon messages muted
[2025-11-24 18:04:55] 2025-11-24 23:00:31,971 [wrapper] ==== wrapper stdout END ====
[2025-11-24 18:04:55] 2025-11-24 23:00:31,997 [wrapper] ==== wrapper stderr END ====
[2025-11-24 18:04:55]  *** Error codes and diagnostics ***
[2025-11-24 18:04:55]     "exeErrorCode": 0,
[2025-11-24 18:04:55]     "exeErrorDiag": "",
[2025-11-24 18:04:55]     "pilotErrorCode": 0,
[2025-11-24 18:04:55]     "pilotErrorDiag": "",
[2025-11-24 18:04:55]  *** Listing of results directory ***
[2025-11-24 18:04:55] total 1310368
[2025-11-24 18:04:55] -rw-r--r--. 1 boincer umatlas    576529 Nov 22 16:27 pilot3.tar.gz
[2025-11-24 18:04:55] -rwx------. 1 boincer umatlas     36292 Nov 22 16:46 runpilot2-wrapper.sh
[2025-11-24 18:04:55] -rw-r--r--. 1 boincer umatlas      5112 Nov 22 16:46 queuedata.json
[2025-11-24 18:04:55] -rw-r--r--. 1 boincer umatlas       100 Nov 24 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 18:04:55] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 00:01 run_atlas
[2025-11-24 18:04:55] -rw-r--r--. 1 boincer umatlas       105 Nov 24 00:01 job.xml
[2025-11-24 18:04:55] -rw-r--r--. 2 boincer umatlas 410243058 Nov 24 00:01 EVNT.47483658._000518.pool.root.1
[2025-11-24 18:04:55] -rw-r--r--. 2 boincer umatlas    590099 Nov 24 00:01 input.tar.gz
[2025-11-24 18:04:55] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 00:01 start_atlas.sh
[2025-11-24 18:04:55] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 00:01 shared
[2025-11-24 18:04:55] -rw-r--r--. 1 boincer umatlas         0 Nov 24 00:01 boinc_lockfile
[2025-11-24 18:04:55] -rw-r--r--. 1 boincer umatlas      2784 Nov 24 00:02 pandaJob.out
[2025-11-24 18:04:55] -rw-------. 1 boincer umatlas        57 Nov 24 00:02 setup.sh.local
[2025-11-24 18:04:55] -rw-------. 1 boincer umatlas    989786 Nov 24 00:03 agis_schedconf.cvmfs.json
[2025-11-24 18:04:55] drwx------. 5 boincer umatlas      4096 Nov 24 00:03 pilot3
[2025-11-24 18:04:55] -rw-r--r--. 1 boincer umatlas       533 Nov 24 17:46 boinc_task_state.xml
[2025-11-24 18:04:55] -rw-------. 1 boincer umatlas 907487906 Nov 24 17:58 HITS.47556137._005136.pool.root.1
[2025-11-24 18:04:55] -rw-------. 1 boincer umatlas      1061 Nov 24 17:59 memory_monitor_summary.json
[2025-11-24 18:04:55] -rw-------. 1 boincer umatlas   1516227 Nov 24 17:59 agis_ddmendpoints.agis.ALL.json
[2025-11-24 18:04:55] -rw-------. 1 boincer umatlas   2565948 Nov 24 17:59 log.47556137._005136.job.log.tgz.1
[2025-11-24 18:04:55] -rw-------. 1 boincer umatlas        95 Nov 24 17:59 pilot_heartbeat.json
[2025-11-24 18:04:55] -rw-------. 1 boincer umatlas      7969 Nov 24 17:59 heartbeat.json
[2025-11-24 18:04:55] -rw-------. 1 boincer umatlas       822 Nov 24 18:00 pilotlog.txt
[2025-11-24 18:04:55] -rw-------. 1 boincer umatlas   7523537 Nov 24 18:00 log.47556137._005136.job.log.1
[2025-11-24 18:04:55] -rw-------. 1 boincer umatlas       353 Nov 24 18:00 output.list
[2025-11-24 18:04:55] -rw-r--r--. 1 boincer umatlas       620 Nov 24 18:00 runtime_log
[2025-11-24 18:04:55] -rw-------. 1 boincer umatlas  10106880 Nov 24 18:00 result.tar.gz
[2025-11-24 18:04:55] -rw-------. 1 boincer umatlas       662 Nov 24 18:00 Ue2MDmAcAh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmPJIKDmvJ0n3m.diag
[2025-11-24 18:04:55] -rw-r--r--. 1 boincer umatlas      9355 Nov 24 18:00 runtime_log.err
[2025-11-24 18:04:55] -rw-r--r--. 1 boincer umatlas      6879 Nov 24 18:04 init_data.xml
[2025-11-24 18:04:55] -rw-r--r--. 1 boincer umatlas      8192 Nov 24 18:04 boinc_mmap_file
[2025-11-24 18:04:55] -rw-r--r--. 1 boincer umatlas        29 Nov 24 18:04 wrapper_checkpoint.txt
[2025-11-24 18:04:55] -rw-r--r--. 1 boincer umatlas     21384 Nov 24 18:04 stderr.txt
[2025-11-24 18:04:55] HITS file was successfully produced:
[2025-11-24 18:04:55] -rw-------. 1 boincer umatlas 907487906 Nov 24 17:58 shared/HITS.pool.root.1
[2025-11-24 18:04:55]  *** Contents of shared directory: ***
[2025-11-24 18:04:55] total 1297324
[2025-11-24 18:04:55] -rw-r--r--. 2 boincer umatlas 410243058 Nov 24 00:01 ATLAS.root_0
[2025-11-24 18:04:55] -rw-r--r--. 2 boincer umatlas    590099 Nov 24 00:01 input.tar.gz
[2025-11-24 18:04:55] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 00:01 start_atlas.sh
[2025-11-24 18:04:55] -rw-------. 1 boincer umatlas 907487906 Nov 24 17:58 HITS.pool.root.1
[2025-11-24 18:04:55] -rw-------. 1 boincer umatlas  10106880 Nov 24 18:00 result.tar.gz
18:04:57 (872134): run_atlas exited; CPU time 266341.071965
18:04:57 (872134): called boinc_finish(0)

</stderr_txt>
]]>

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