Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-25 14:57:34 (29656): vboxwrapper version 26210
2025-11-25 14:57:34 (29656): BOINC client version: 8.0.2
2025-11-25 14:57:34 (29656): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-11-25 14:57:35 (29656): Successfully copied 'init_data.xml' to the shared directory.
2025-11-25 14:57:35 (29656): Create VM. (boinc_4d4a7181d6ce8eb1, slot#6)
2025-11-25 14:57:35 (29656): Setting Memory Size for VM. (4800MB)
2025-11-25 14:57:36 (29656): Setting CPU Count for VM. (8)
2025-11-25 14:57:36 (29656): Setting Chipset Options for VM.
2025-11-25 14:57:36 (29656): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-25 14:57:36 (29656): Setting Boot Options for VM.
2025-11-25 14:57:37 (29656): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-25 14:57:37 (29656): Enabling VM Network Access.
2025-11-25 14:57:37 (29656): Disabling USB Support for VM.
2025-11-25 14:57:38 (29656): Disabling COM Port Support for VM.
2025-11-25 14:57:38 (29656): Disabling LPT Port Support for VM.
2025-11-25 14:57:38 (29656): Disabling Audio Support for VM.
2025-11-25 14:57:38 (29656): Disabling Clipboard Support for VM.
2025-11-25 14:57:39 (29656): Disabling Drag and Drop Support for VM.
2025-11-25 14:57:39 (29656): Adding storage controller(s) to VM.
2025-11-25 14:57:39 (29656): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-25 14:57:40 (29656): Adding VirtualBox Guest Additions to VM.
2025-11-25 14:57:40 (29656): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-25 14:57:40 (29656): forwarding host port 60723 to guest port 80
2025-11-25 14:57:41 (29656): Enabling remote desktop for VM.
2025-11-25 14:57:41 (29656): Required extension pack not installed, remote desktop not enabled.
2025-11-25 14:57:41 (29656): Enabling shared directory for VM.
2025-11-25 14:57:41 (29656): Starting VM using VBoxManage interface. (boinc_4d4a7181d6ce8eb1, slot#6)
2025-11-25 14:57:46 (29656): Successfully started VM. (PID = '27904')
2025-11-25 14:57:46 (29656): Reporting VM Process ID to BOINC.
2025-11-25 14:57:46 (29656): Guest Log: BIOS: VirtualBox 7.0.6
2025-11-25 14:57:46 (29656): Guest Log: CPUID EDX: 0x178bfbff
2025-11-25 14:57:46 (29656): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-25 14:57:46 (29656): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-25 14:57:46 (29656): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-25 14:57:46 (29656): Detected: Web Application Enabled (http://localhost:60723)
2025-11-25 14:57:46 (29656): Preference change detected
2025-11-25 14:57:46 (29656): Setting CPU throttle for VM. (50%)
2025-11-25 14:57:47 (29656): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-25 14:57:48 (29656): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-25 14:57:48 (29656): Guest Log: BIOS: Booting from Hard Disk...
2025-11-25 14:57:51 (29656): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-25 14:57:51 (29656): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-25 14:57:51 (29656): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-25 14:57:51 (29656): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-25 14:57:51 (29656): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-25 14:57:51 (29656): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-25 14:57:51 (29656): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-25 14:57:51 (29656): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-25 14:57:51 (29656): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-25 14:57:51 (29656): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-25 14:57:51 (29656): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-25 14:57:51 (29656): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-25 14:57:51 (29656): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-25 14:57:51 (29656): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-25 14:57:51 (29656): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-25 14:57:51 (29656): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-25 14:57:51 (29656): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-25 14:57:51 (29656): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-25 14:57:51 (29656): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-25 14:57:51 (29656): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-25 14:57:51 (29656): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-25 14:57:51 (29656): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-25 14:57:51 (29656): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-25 14:57:51 (29656): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-25 14:57:51 (29656): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-25 14:57:51 (29656): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-25 14:57:51 (29656): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-25 14:57:51 (29656): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-25 14:57:51 (29656): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-25 14:57:51 (29656): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-25 14:57:51 (29656): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-25 14:57:51 (29656): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-25 14:57:56 (29656): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-25 14:57:56 (29656): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-11-25 14:58:00 (29656): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-25 14:58:00 (29656): Guest Log: 00:00:00.000077 main     Log opened 2025-11-25T14:57:58.527016000Z
2025-11-25 14:58:00 (29656): Guest Log: 00:00:00.000136 main     OS Product: Linux
2025-11-25 14:58:00 (29656): Guest Log: 00:00:00.000152 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-25 14:58:00 (29656): Guest Log: 00:00:00.000163 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-25 14:58:00 (29656): Guest Log: 00:00:00.000173 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-25 14:58:00 (29656): Guest Log: 00:00:00.000173 main     Process ID: 1368
2025-11-25 14:58:00 (29656): Guest Log: 00:00:00.000174 main     Package type: LINUX_64BITS_GENERIC
2025-11-25 14:58:00 (29656): Guest Log: 00:00:00.004130 main     5.2.32 r132073 started. Verbose level = 0
2025-11-25 14:58:00 (29656): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-25 14:58:00 (29656): Guest Log: [INFO] Mounting shared directory
2025-11-25 14:58:00 (29656): Guest Log: [INFO] Checking for init_data.xml
2025-11-25 14:58:10 (29656): Guest Log: 00:00:10.007664 timesync vgsvcTimeSyncWorker: Radical guest time change: 18 012 195 036 000ns (GuestNow=1 764 100 690 727 789 000 ns GuestLast=1 764 082 678 532 753 000 ns fSetTimeLastLoop=true )
2025-11-25 14:59:00 (29656): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-25 14:59:00 (29656): Guest Log: [INFO] Detected branch: prod
2025-11-25 14:59:00 (29656): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-25 14:59:00 (29656): Guest Log: Copying input files
2025-11-25 14:59:02 (29656): Guest Log: Copied input files into RunAtlas.
2025-11-25 14:59:02 (29656): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-11-25 14:59:02 (29656): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-11-25 14:59:02 (29656): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-11-25 14:59:02 (29656): Guest Log: Further information can be found at the LHC@home message board.
2025-11-25 15:00:22 (29656): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-25 15:00:22 (29656): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-25 15:00:22 (29656): Guest Log: 2.6.3.0 1675 1 30164 153295 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-11-25 15:00:23 (29656): Guest Log: copied the webapp to /var/www
2025-11-25 15:00:23 (29656): Guest Log: ATHENA_PROC_NUMBER=8
2025-11-25 15:00:23 (29656): Guest Log: ATHENA_CORE_NUMBER=8
2025-11-25 15:00:23 (29656): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-25 15:00:23 (29656): Guest Log:  *** Starting ATLAS job. (PandaID=6895334480 taskID=47556137) ***
2025-11-25 15:30:35 (29656): Guest Log:  *** Job finished ***
2025-11-25 15:30:35 (29656): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-25 15:30:35 (29656): Guest Log: 2025-11-25 20:30:14,595 | INFO     | end of generic workflow (traces error code: 0)
2025-11-25 15:30:35 (29656): Guest Log: 2025-11-25 20:30:14,595 | INFO     | traces error code: 0
2025-11-25 15:30:35 (29656): Guest Log: 2025-11-25 20:30:14,595 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-25 15:30:35 (29656): Guest Log: 2025-11-25 20:30:32,259 | INFO     | PID=6114 has CPU usage=0.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-11-25 15:30:35 (29656): Guest Log: 2025-11-25 20:30:32,260 | INFO     | found 0 job(s) in 20 queues
2025-11-25 15:30:35 (29656): Guest Log: 2025-11-25 20:30:32,260 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-11-25 15:30:35 (29656): Guest Log: 2025-11-25 20:30:32,260 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-11-25 15:30:35 (29656): Guest Log: 2025-11-25 20:30:32,260 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-25 15:30:35 (29656): Guest Log: 2025-11-25 20:30:32,260 | CRITICAL | thread 'MainThread' is not alive
2025-11-25 15:30:35 (29656): Guest Log: 2025-11-25 20:30:32,260 | INFO     | [monitor] control thread has ended
2025-11-25 15:30:35 (29656): Guest Log: 2025-11-25 20:30:32,315 [wrapper] ==== pilot stdout END ====
2025-11-25 15:30:35 (29656): Guest Log: 2025-11-25 20:30:32,317 [wrapper] ==== wrapper stdout RESUME ====
2025-11-25 15:30:35 (29656): Guest Log: 2025-11-25 20:30:32,319 [wrapper] pilotpid: 6114
2025-11-25 15:30:35 (29656): Guest Log: 2025-11-25 20:30:32,321 [wrapper] Pilot exit status: 0
2025-11-25 15:30:35 (29656): Guest Log: 2025-11-25 20:30:32,331 [wrapper] pandaids: 6895334480
2025-11-25 15:30:35 (29656): Guest Log: 2025-11-25 20:30:32,347 [wrapper] cleanup supervisor_pilot 19295 6115
2025-11-25 15:30:35 (29656): Guest Log: 2025-11-25 20:30:32,348 [wrapper] Test setup, not cleaning
2025-11-25 15:30:35 (29656): Guest Log: 2025-11-25 20:30:32,350 [wrapper] apfmon messages muted
2025-11-25 15:30:35 (29656): Guest Log: 2025-11-25 20:30:32,352 [wrapper] ==== wrapper stdout END ====
2025-11-25 15:30:35 (29656): Guest Log: 2025-11-25 20:30:32,353 [wrapper] ==== wrapper stderr END ====
2025-11-25 15:30:35 (29656): Guest Log:  *** Error codes and diagnostics ***
2025-11-25 15:30:35 (29656): Guest Log:     "exeErrorCode": 65,
2025-11-25 15:30:35 (29656): Guest Log:     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (65); Logfile error in log.EVNTtoHITS: \"Segmentation fault: Event counter: 8; Run: 284500; Evt: 1871057; Current algorithm: ISF_Kernel_FullG4; Current Function: unknown\"",
2025-11-25 15:30:35 (29656): Guest Log:     "pilotErrorCode": 1305,
2025-11-25 15:30:35 (29656): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (65); Logfile error in log.EVNTtoHITS: \"Segmentation fault: Event counter: 8; Run: 284500; Evt: 1871057; Current algorithm",
2025-11-25 15:30:35 (29656): Guest Log:  *** Listing of results directory ***
2025-11-25 15:30:35 (29656): Guest Log: total 5420
2025-11-25 15:30:35 (29656): Guest Log: -rw-r--r--. 1 atlas atlas  576529 Nov 22 03:44 pilot3.tar.gz
2025-11-25 15:30:35 (29656): Guest Log: -rw-r--r--. 1 atlas atlas    5112 Nov 22 03:47 queuedata.json
2025-11-25 15:30:35 (29656): Guest Log: -rwx------. 1 atlas atlas   36292 Nov 22 03:48 runpilot2-wrapper.sh
2025-11-25 15:30:35 (29656): Guest Log: -rwxr-xr-x. 1 atlas atlas    9003 Nov 25 19:59 init_data.xml
2025-11-25 15:30:35 (29656): Guest Log: -rwxr-xr-x. 1 atlas atlas  590100 Nov 25 19:59 input.tar.gz
2025-11-25 15:30:35 (29656): Guest Log: -rwxr-xr-x. 1 atlas atlas   15847 Nov 25 19:59 start_atlas.sh
2025-11-25 15:30:35 (29656): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Nov 25 19:59 EVNT.47483658._000238.pool.root.1 -> /data/./ATLAS.root_0
2025-11-25 15:30:35 (29656): Guest Log: -rw-r--r--. 1 atlas atlas    2785 Nov 25 20:00 pandaJob.out
2025-11-25 15:30:35 (29656): Guest Log: -rw-------. 1 atlas atlas  991893 Nov 25 20:00 agis_schedconf.cvmfs.json
2025-11-25 15:30:35 (29656): Guest Log: -rw-------. 1 atlas atlas 1516240 Nov 25 20:00 agis_ddmendpoints.agis.ALL.json
2025-11-25 15:30:35 (29656): Guest Log: drwx------. 5 atlas atlas    4096 Nov 25 20:01 pilot3
2025-11-25 15:30:35 (29656): Guest Log: -rw-------. 1 atlas atlas    1025 Nov 25 20:27 memory_monitor_summary.json
2025-11-25 15:30:35 (29656): Guest Log: -rw-------. 1 atlas atlas  561271 Nov 25 20:27 log.47556137._002342.job.log.tgz.1
2025-11-25 15:30:35 (29656): Guest Log: -rw-------. 1 atlas atlas    9701 Nov 25 20:30 heartbeat.json
2025-11-25 15:30:35 (29656): Guest Log: -rw-------. 1 atlas atlas     814 Nov 25 20:30 pilotlog.txt
2025-11-25 15:30:35 (29656): Guest Log: -rw-------. 1 atlas atlas      95 Nov 25 20:30 pilot_heartbeat.json
2025-11-25 15:30:35 (29656): Guest Log: -rw-------. 1 atlas atlas  291975 Nov 25 20:30 log.47556137._002342.job.log.1
2025-11-25 15:30:35 (29656): Guest Log: -rw-------. 1 atlas atlas     186 Nov 25 20:30 output.list
2025-11-25 15:30:35 (29656): Guest Log: -rw-r--r--. 1 atlas atlas     620 Nov 25 20:30 runtime_log
2025-11-25 15:30:35 (29656): Guest Log: -rw-------. 1 atlas atlas  870400 Nov 25 20:30 result.tar.gz
2025-11-25 15:30:35 (29656): Guest Log: -rw-r--r--. 1 atlas atlas    8588 Nov 25 20:30 runtime_log.err
2025-11-25 15:30:35 (29656): Guest Log: -rw-------. 1 atlas atlas     647 Nov 25 20:30 G04MDm5mtg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm3vHKDmxVC06m.diag
2025-11-25 15:30:35 (29656): Guest Log: Looking for outputfile HITS.47556137._002342.pool.root.1
2025-11-25 15:30:35 (29656): Guest Log: No HITS file was produced
2025-11-25 15:30:35 (29656): Guest Log: Successfully finished the ATLAS job!
2025-11-25 15:30:35 (29656): Guest Log: Copying the results back to the shared directory!
2025-11-25 15:30:35 (29656): Guest Log:  *** Contents of shared directory: ***
2025-11-25 15:30:35 (29656): Guest Log: total 401336
2025-11-25 15:30:35 (29656): Guest Log: -rwxrwxrwx. 1 root root 409469447 Nov 25 19:57 ATLAS.root_0
2025-11-25 15:30:35 (29656): Guest Log: -rwxrwxrwx. 1 root root      9003 Nov 25 19:57 init_data.xml
2025-11-25 15:30:35 (29656): Guest Log: -rwxrwxrwx. 1 root root    590100 Nov 24 05:38 input.tar.gz
2025-11-25 15:30:35 (29656): Guest Log: -rwxrwxrwx. 1 root root    870400 Nov 25 20:30 result.tar.gz
2025-11-25 15:30:35 (29656): Guest Log: -rwxrwxrwx. 1 root root     15847 Nov 24 05:38 start_atlas.sh
2025-11-25 15:30:35 (29656): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-25 15:30:35 (29656): VM Completion File Detected.
2025-11-25 15:30:35 (29656): Powering off VM.
2025-11-25 15:30:36 (29656): Successfully stopped VM.
2025-11-25 15:30:36 (29656): Deregistering VM. (boinc_4d4a7181d6ce8eb1, slot#6)
2025-11-25 15:30:36 (29656): Removing network bandwidth throttle group from VM.
2025-11-25 15:30:36 (29656): Removing VM from VirtualBox.
2025-11-25 15:30:41 (29656): called boinc_finish(0)

</stderr_txt>
]]>

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