Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
23:02:23 (26718): wrapper (7.7.26015): starting
23:02:23 (26718): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 23:02:23] Arguments: --nthreads 8
[2025-11-23 23:02:23] Threads: 8
[2025-11-23 23:02:23] Checking for CVMFS
[2025-11-23 23:02:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 23:02:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 23:02:23] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 23:02:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 23:02:23] 2.11.2.0 2913 69915 83076 153231 1 82 13603620 20275201 1 130560 0 21115491 99.903 3420292 30647 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-23 23:02:23] CVMFS is ok
[2025-11-23 23:02:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 23:02:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 23:02:23] Further information can be found at the LHC@home message board.
[2025-11-23 23:02:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 23:02:23] Checking for apptainer binary...
[2025-11-23 23:02:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 23:02:23] Running /usr/bin/apptainer --version
[2025-11-23 23:02:23] apptainer version 1.3.2-1.el7
[2025-11-23 23:02:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 23:02:25] c-115-15.aglt2.org
[2025-11-23 23:02:25] apptainer works
[2025-11-23 23:02:25] Set ATHENA_PROC_NUMBER=8
[2025-11-23 23:02:25] Set ATHENA_CORE_NUMBER=8
[2025-11-23 23:02:25] Starting ATLAS job with PandaID=6895355709
[2025-11-23 23:02:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 10:09:16]  *** The last 200 lines of the pilot log: ***
[2025-11-24 10:09:16] 2025-11-24 15:08:44,345 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 10:09:16] 2025-11-24 15:08:44,930 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-24 10:09:16] 2025-11-24 15:08:44,933 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1729.125
[2025-11-24 10:09:16] 2025-11-24 15:08:44,936 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895355709/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 10:09:16] 2025-11-24 15:08:44,937 | INFO     | extracted standard info from prmon json
[2025-11-24 10:09:16] 2025-11-24 15:08:44,937 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 10:09:16] 2025-11-24 15:08:44,937 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 10:09:16] 2025-11-24 15:08:44,949 | INFO     | fitting pss+swap vs Time
[2025-11-24 10:09:16] 2025-11-24 15:08:44,949 | INFO     | sum of square deviations: 87137121556.5864
[2025-11-24 10:09:16] 2025-11-24 15:08:44,958 | INFO     | sum of deviations: 653360021749.6737
[2025-11-24 10:09:16] 2025-11-24 15:08:44,958 | INFO     | mean x: 1763976940.6045802
[2025-11-24 10:09:16] 2025-11-24 15:08:44,958 | INFO     | mean y: 3174719.975572519
[2025-11-24 10:09:16] 2025-11-24 15:08:44,958 | INFO     | intersect: -13223243500.99924
[2025-11-24 10:09:16] 2025-11-24 15:08:44,959 | INFO     | chi2: 6.279786678797685
[2025-11-24 10:09:16] 2025-11-24 15:08:44,960 | INFO     | sum of square deviations: 85156935437.24446
[2025-11-24 10:09:16] 2025-11-24 15:08:44,968 | INFO     | sum of deviations: 884147942482.3059
[2025-11-24 10:09:16] 2025-11-24 15:08:44,968 | INFO     | mean x: 1763976788.1092308
[2025-11-24 10:09:16] 2025-11-24 15:08:44,968 | INFO     | mean y: 3192479.4323076922
[2025-11-24 10:09:16] 2025-11-24 15:08:44,968 | INFO     | intersect: -18311422058.83588
[2025-11-24 10:09:16] 2025-11-24 15:08:44,969 | INFO     | chi2: 3.3410059956086866
[2025-11-24 10:09:16] 2025-11-24 15:08:44,969 | INFO     | current chi2=3.3410059956086866 (change=46.79746038366468 %)
[2025-11-24 10:09:16] 2025-11-24 15:08:44,970 | INFO     | sum of square deviations: 83206982442.87439
[2025-11-24 10:09:16] 2025-11-24 15:08:44,977 | INFO     | sum of deviations: 991760248463.2476
[2025-11-24 10:09:16] 2025-11-24 15:08:44,978 | INFO     | mean x: 1763976635.6139536
[2025-11-24 10:09:16] 2025-11-24 15:08:44,978 | INFO     | mean y: 3200888.0170542635
[2025-11-24 10:09:16] 2025-11-24 15:08:44,978 | INFO     | intersect: -21021980593.848778
[2025-11-24 10:09:16] 2025-11-24 15:08:44,979 | INFO     | chi2: 2.594990166079273
[2025-11-24 10:09:16] 2025-11-24 15:08:44,979 | INFO     | current chi2=2.594990166079273 (change=22.32907784391747 %)
[2025-11-24 10:09:16] 2025-11-24 15:08:44,979 | INFO     | right removable region: 644
[2025-11-24 10:09:16] 2025-11-24 15:08:44,979 | INFO     | sum of square deviations: 85156733588.46135
[2025-11-24 10:09:16] 2025-11-24 15:08:44,987 | INFO     | sum of deviations: 451350690704.79944
[2025-11-24 10:09:16] 2025-11-24 15:08:44,988 | INFO     | mean x: 1763977093.1076922
[2025-11-24 10:09:16] 2025-11-24 15:08:44,988 | INFO     | mean y: 3190245.56
[2025-11-24 10:09:16] 2025-11-24 15:08:44,988 | INFO     | intersect: -9346302693.063961
[2025-11-24 10:09:16] 2025-11-24 15:08:44,989 | INFO     | chi2: 3.893266353970487
[2025-11-24 10:09:16] 2025-11-24 15:08:44,989 | INFO     | current chi2=3.893266353970487 (change=38.00320690645047 %)
[2025-11-24 10:09:16] 2025-11-24 15:08:44,989 | INFO     | sum of square deviations: 83206539339.10066
[2025-11-24 10:09:16] 2025-11-24 15:08:44,997 | INFO     | sum of deviations: 410874130669.2162
[2025-11-24 10:09:16] 2025-11-24 15:08:44,997 | INFO     | mean x: 1763977245.6124032
[2025-11-24 10:09:16] 2025-11-24 15:08:44,998 | INFO     | mean y: 3193410.0728682172
[2025-11-24 10:09:16] 2025-11-24 15:08:44,998 | INFO     | intersect: -8707331304.30721
[2025-11-24 10:09:16] 2025-11-24 15:08:44,998 | INFO     | chi2: 3.852982847717053
[2025-11-24 10:09:16] 2025-11-24 15:08:44,998 | INFO     | current chi2=3.852982847717053 (change=1.0346968994903574 %)
[2025-11-24 10:09:16] 2025-11-24 15:08:44,999 | INFO     | left removable region: 20
[2025-11-24 10:09:16] 2025-11-24 15:08:44,999 | INFO     | sum of square deviations: 75341459863.98553
[2025-11-24 10:09:16] 2025-11-24 15:08:45,007 | INFO     | sum of deviations: 680012268815.1489
[2025-11-24 10:09:16] 2025-11-24 15:08:45,007 | INFO     | mean x: 1763977215.1201923
[2025-11-24 10:09:16] 2025-11-24 15:08:45,007 | INFO     | mean y: 3226188.091346154
[2025-11-24 10:09:16] 2025-11-24 15:08:45,007 | INFO     | intersect: -15917969795.602398
[2025-11-24 10:09:16] 2025-11-24 15:08:45,008 | INFO     | chi2: 0.09554362745741181
[2025-11-24 10:09:16] 2025-11-24 15:08:45,008 | INFO     | current memory leak: 9.03 B/s (using 624 data points, chi2=0.10)
[2025-11-24 10:09:16] 2025-11-24 15:08:45,008 | INFO     | could have reported an average CPU frequency of 2366 MHz (25 samples)
[2025-11-24 10:09:16] 2025-11-24 15:08:45,008 | INFO     | ..............................
[2025-11-24 10:09:16] 2025-11-24 15:08:45,008 | INFO     | . Timing measurements:
[2025-11-24 10:09:16] 2025-11-24 15:08:45,009 | INFO     | . get job = 0 s
[2025-11-24 10:09:16] 2025-11-24 15:08:45,009 | INFO     | . initial setup = 2 s
[2025-11-24 10:09:16] 2025-11-24 15:08:45,009 | INFO     | . payload setup = 8 s
[2025-11-24 10:09:16] 2025-11-24 15:08:45,009 | INFO     | . stage-in = 0 s
[2025-11-24 10:09:16] 2025-11-24 15:08:45,009 | INFO     | . payload execution = 39918 s
[2025-11-24 10:09:16] 2025-11-24 15:08:45,009 | INFO     | . stage-out = 3 s
[2025-11-24 10:09:16] 2025-11-24 15:08:45,009 | INFO     | . log creation = 0 s
[2025-11-24 10:09:16] 2025-11-24 15:08:45,009 | INFO     | ..............................
[2025-11-24 10:09:16] 2025-11-24 15:08:45,089 | INFO     | 
[2025-11-24 10:09:16] 2025-11-24 15:08:45,089 | INFO     | job summary report
[2025-11-24 10:09:16] 2025-11-24 15:08:45,089 | INFO     | --------------------------------------------------
[2025-11-24 10:09:16] 2025-11-24 15:08:45,090 | INFO     | PanDA job id: 6895355709
[2025-11-24 10:09:16] 2025-11-24 15:08:45,090 | INFO     | task id: 47556137
[2025-11-24 10:09:16] 2025-11-24 15:08:45,090 | INFO     | errors: (none)
[2025-11-24 10:09:16] 2025-11-24 15:08:45,090 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 10:09:16] 2025-11-24 15:08:45,090 | INFO     | pilot state: finished 
[2025-11-24 10:09:16] 2025-11-24 15:08:45,090 | INFO     | transexitcode: 0
[2025-11-24 10:09:16] 2025-11-24 15:08:45,090 | INFO     | exeerrorcode: 0
[2025-11-24 10:09:16] 2025-11-24 15:08:45,090 | INFO     | exeerrordiag: 
[2025-11-24 10:09:16] 2025-11-24 15:08:45,090 | INFO     | exitcode: 0
[2025-11-24 10:09:16] 2025-11-24 15:08:45,091 | INFO     | exitmsg: OK
[2025-11-24 10:09:16] 2025-11-24 15:08:45,091 | INFO     | cpuconsumptiontime: 309618 s
[2025-11-24 10:09:16] 2025-11-24 15:08:45,091 | INFO     | nevents: 1000
[2025-11-24 10:09:16] 2025-11-24 15:08:45,091 | INFO     | neventsw: 0
[2025-11-24 10:09:16] 2025-11-24 15:08:45,091 | INFO     | pid: 4564
[2025-11-24 10:09:16] 2025-11-24 15:08:45,091 | INFO     | pgrp: 4564
[2025-11-24 10:09:16] 2025-11-24 15:08:45,091 | INFO     | corecount: 8
[2025-11-24 10:09:16] 2025-11-24 15:08:45,091 | INFO     | event service: False
[2025-11-24 10:09:16] 2025-11-24 15:08:45,091 | INFO     | sizes: {0: 2298806, 6: 2299068, 11: 2299096, 39930: 2342601, 39934: 2352386, 39937: 2352442, 39945: 2352880}
[2025-11-24 10:09:16] 2025-11-24 15:08:45,092 | INFO     | --------------------------------------------------
[2025-11-24 10:09:16] 2025-11-24 15:08:45,092 | INFO     | 
[2025-11-24 10:09:16] 2025-11-24 15:08:45,092 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-24 10:09:16] 2025-11-24 15:08:45,117 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 10:09:16] 2025-11-24 15:08:45,118 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 10:09:16] 2025-11-24 15:08:45,118 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 10:09:16] 2025-11-24 15:08:45,118 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 10:09:16] 2025-11-24 15:08:45,119 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 10:09:16] 2025-11-24 15:08:45,119 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 10:09:16] 2025-11-24 15:08:45,119 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 10:09:16] 2025-11-24 15:08:45,119 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 10:09:16] 2025-11-24 15:08:45,119 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 10:09:16] 2025-11-24 15:08:45,120 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 10:09:16] 2025-11-24 15:08:45,120 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 10:09:16] 2025-11-24 15:08:45,120 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 10:09:16] 2025-11-24 15:08:45,120 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 10:09:16] 2025-11-24 15:08:45,120 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 10:09:16] 2025-11-24 15:08:45,120 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 10:09:16] 2025-11-24 15:08:45,121 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 10:09:16] 2025-11-24 15:08:45,121 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 10:09:16] 2025-11-24 15:08:45,121 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 10:09:16] 2025-11-24 15:08:45,121 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 10:09:16] 2025-11-24 15:08:45,121 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 10:09:16] 2025-11-24 15:08:45,122 | INFO     | job 6895355709 has completed (purged errors)
[2025-11-24 10:09:16] 2025-11-24 15:08:45,122 | INFO     | overall cleanup function is called
[2025-11-24 10:09:16] 2025-11-24 15:08:46,138 | INFO     | --- collectZombieJob: --- 10, [4564]
[2025-11-24 10:09:16] 2025-11-24 15:08:46,138 | INFO     | zombie collector waiting for pid 4564
[2025-11-24 10:09:16] 2025-11-24 15:08:46,138 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 10:09:16] 2025-11-24 15:08:46,138 | INFO     | collected zombie processes
[2025-11-24 10:09:16] 2025-11-24 15:08:46,138 | INFO     | will attempt to kill all subprocesses of pid=4564
[2025-11-24 10:09:16] 2025-11-24 15:08:46,222 | INFO     | process IDs to be killed: [4564] (in reverse order)
[2025-11-24 10:09:16] 2025-11-24 15:08:46,278 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 10:09:16] 2025-11-24 15:08:46,278 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 10:09:16] 2025-11-24 15:08:46,282 | INFO     | did not find any defunct processes belonging to 4564
[2025-11-24 10:09:16] 2025-11-24 15:08:46,286 | INFO     | did not find any defunct processes belonging to 4564
[2025-11-24 10:09:16] 2025-11-24 15:08:46,288 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 10:09:16] 2025-11-24 15:08:46,289 | INFO     | ready for new job
[2025-11-24 10:09:16] 2025-11-24 15:08:46,289 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 10:09:16] 2025-11-24 15:08:46,291 | INFO     | ***************************************
[2025-11-24 10:09:16] 2025-11-24 15:08:46,292 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 10:09:16] 2025-11-24 15:08:46,292 | INFO     | ***************************************
[2025-11-24 10:09:16] 2025-11-24 15:08:46,292 | INFO     | 
[2025-11-24 10:09:16] 2025-11-24 15:08:46,292 | INFO     | architecture information:
[2025-11-24 10:09:16] 2025-11-24 15:08:46,293 | INFO     | executing command: cat /etc/os-release
[2025-11-24 10:09:16] 2025-11-24 15:08:46,311 | INFO     | cat /etc/os-release:
[2025-11-24 10:09:16] NAME="CentOS Linux"
[2025-11-24 10:09:16] VERSION="7 (Core)"
[2025-11-24 10:09:16] ID="centos"
[2025-11-24 10:09:16] ID_LIKE="rhel fedora"
[2025-11-24 10:09:16] VERSION_ID="7"
[2025-11-24 10:09:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 10:09:16] ANSI_COLOR="0;31"
[2025-11-24 10:09:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 10:09:16] HOME_URL="https://www.centos.org/"
[2025-11-24 10:09:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 10:09:16] 
[2025-11-24 10:09:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 10:09:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 10:09:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 10:09:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 10:09:16] 
[2025-11-24 10:09:16] 2025-11-24 15:08:46,312 | INFO     | ***************************************
[2025-11-24 10:09:16] 2025-11-24 15:08:46,815 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-24 10:09:16] 2025-11-24 15:08:46,833 | INFO     | sufficient remaining disk space (17462984704 B)
[2025-11-24 10:09:16] 2025-11-24 15:08:46,834 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 10:09:16] 2025-11-24 15:08:46,834 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 10:09:16] 2025-11-24 15:08:46,834 | INFO     | update_server=False
[2025-11-24 10:09:16] 2025-11-24 15:08:46,834 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 10:09:16] 2025-11-24 15:08:46,835 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 10:09:16] 2025-11-24 15:08:46,835 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 10:09:16] 2025-11-24 15:08:46,849 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-24 10:09:16] 2025-11-24 15:08:46,849 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-24 10:09:16] 2025-11-24 15:08:46,853 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 10:09:16] 2025-11-24 15:08:46,854 | INFO     | will abort loop
[2025-11-24 10:09:16] 2025-11-24 15:08:47,468 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 10:09:16] 2025-11-24 15:08:47,777 | INFO     | all data control threads have been joined
[2025-11-24 10:09:16] 2025-11-24 15:08:47,839 | INFO     | [job] queue monitor thread has finished
[2025-11-24 10:09:16] 2025-11-24 15:08:47,840 | INFO     | [job] retrieve thread has finished
[2025-11-24 10:09:16] 2025-11-24 15:08:47,859 | INFO     | [job] job monitor thread has finished
[2025-11-24 10:09:16] 2025-11-24 15:08:48,070 | INFO     | [monitor] cgroup control has ended
[2025-11-24 10:09:16] 2025-11-24 15:08:48,261 | INFO     | all payload control threads have been joined
[2025-11-24 10:09:16] 2025-11-24 15:08:48,263 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 10:09:16] 2025-11-24 15:08:48,343 | INFO     | [data] copytool_in thread has finished
[2025-11-24 10:09:16] 2025-11-24 15:08:48,443 | INFO     | all job control threads have been joined
[2025-11-24 10:09:16] 2025-11-24 15:08:48,490 | INFO     | [payload] failed_post thread has finished
[2025-11-24 10:09:16] 2025-11-24 15:08:48,674 | INFO     | [payload] validate_post thread has finished
[2025-11-24 10:09:16] 2025-11-24 15:08:48,781 | INFO     | [data] control thread has finished
[2025-11-24 10:09:16] 2025-11-24 15:08:48,841 | INFO     | [data] copytool_out thread has finished
[2025-11-24 10:09:16] 2025-11-24 15:08:48,894 | INFO     | [job] validate thread has finished
[2025-11-24 10:09:16] 2025-11-24 15:08:48,966 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 10:09:16] 2025-11-24 15:08:49,215 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 10:09:16] 2025-11-24 15:08:49,266 | INFO     | [payload] control thread has finished
[2025-11-24 10:09:16] 2025-11-24 15:08:49,449 | INFO     | [job] control thread has finished
[2025-11-24 10:09:16] 2025-11-24 15:08:51,475 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 10:09:16] 2025-11-24 15:08:57,689 | INFO     | job.realtimelogging is not enabled
[2025-11-24 10:09:16] 2025-11-24 15:08:58,694 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 10:09:16] 2025-11-24 15:08:59,703 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140034065401664)>', '<ExcThread(monitor, started 140033625409280)>']
[2025-11-24 10:09:16] 2025-11-24 15:09:04,718 | INFO     | all workflow threads have been joined
[2025-11-24 10:09:16] 2025-11-24 15:09:04,718 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 10:09:16] 2025-11-24 15:09:04,718 | INFO     | traces error code: 0
[2025-11-24 10:09:16] 2025-11-24 15:09:04,719 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 10:09:16] 2025-11-24 15:09:16,262 | INFO     | PID=30412 has CPU usage=5.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-24 10:09:16] 2025-11-24 15:09:16,263 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 10:09:16] 2025-11-24 15:09:16,263 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 10:09:16] 2025-11-24 15:09:16,263 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 10:09:16] 2025-11-24 15:09:16,263 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 10:09:16] 2025-11-24 15:09:16,263 | INFO     | [monitor] control thread has ended
[2025-11-24 10:09:16] 2025-11-24 15:09:16,361 [wrapper] ==== pilot stdout END ====
[2025-11-24 10:09:16] 2025-11-24 15:09:16,366 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 10:09:16] 2025-11-24 15:09:16,370 [wrapper] pilotpid: 30412
[2025-11-24 10:09:16] 2025-11-24 15:09:16,375 [wrapper] Pilot exit status: 0
[2025-11-24 10:09:16] 2025-11-24 15:09:16,390 [wrapper] pandaids: 6895355709
[2025-11-24 10:09:16] 2025-11-24 15:09:16,432 [wrapper] cleanup supervisor_pilot 26770 30413
[2025-11-24 10:09:16] 2025-11-24 15:09:16,437 [wrapper] Test setup, not cleaning
[2025-11-24 10:09:16] 2025-11-24 15:09:16,442 [wrapper] apfmon messages muted
[2025-11-24 10:09:16] 2025-11-24 15:09:16,446 [wrapper] ==== wrapper stdout END ====
[2025-11-24 10:09:16] 2025-11-24 15:09:16,451 [wrapper] ==== wrapper stderr END ====
[2025-11-24 10:09:16]  *** Error codes and diagnostics ***
[2025-11-24 10:09:16]     "exeErrorCode": 0,
[2025-11-24 10:09:16]     "exeErrorDiag": "",
[2025-11-24 10:09:16]     "pilotErrorCode": 0,
[2025-11-24 10:09:16]     "pilotErrorDiag": "",
[2025-11-24 10:09:16]  *** Listing of results directory ***
[2025-11-24 10:09:16] total 1315988
[2025-11-24 10:09:16] -rw-r--r-- 1 boincer umatlas    576529 Nov 23 03:03 pilot3.tar.gz
[2025-11-24 10:09:16] -rwx------ 1 boincer umatlas     36292 Nov 23 03:23 runpilot2-wrapper.sh
[2025-11-24 10:09:16] -rw-r--r-- 1 boincer umatlas      5112 Nov 23 03:23 queuedata.json
[2025-11-24 10:09:16] -rw-r--r-- 1 boincer umatlas       100 Nov 23 23:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 10:09:16] -rwxr-xr-x 1 boincer umatlas      7986 Nov 23 23:02 run_atlas
[2025-11-24 10:09:16] -rw-r--r-- 1 boincer umatlas       105 Nov 23 23:02 job.xml
[2025-11-24 10:09:16] -rw-r--r-- 2 boincer umatlas 411829867 Nov 23 23:02 EVNT.47483658._000672.pool.root.1
[2025-11-24 10:09:16] -rw-r--r-- 2 boincer umatlas     15847 Nov 23 23:02 start_atlas.sh
[2025-11-24 10:09:16] drwxrwx--x 2 boincer umatlas      4096 Nov 23 23:02 shared
[2025-11-24 10:09:16] -rw-r--r-- 2 boincer umatlas    590097 Nov 23 23:02 input.tar.gz
[2025-11-24 10:09:16] -rw-r--r-- 1 boincer umatlas         0 Nov 23 23:02 boinc_lockfile
[2025-11-24 10:09:16] -rw-r--r-- 1 boincer umatlas      2785 Nov 23 23:02 pandaJob.out
[2025-11-24 10:09:16] -rw------- 1 boincer umatlas        57 Nov 23 23:02 setup.sh.local
[2025-11-24 10:09:16] -rw------- 1 boincer umatlas    989786 Nov 23 23:02 agis_schedconf.cvmfs.json
[2025-11-24 10:09:16] drwx------ 5 boincer umatlas      4096 Nov 23 23:02 pilot3
[2025-11-24 10:09:16] -rw-r--r-- 1 boincer umatlas       533 Nov 24 09:58 boinc_task_state.xml
[2025-11-24 10:09:16] -rw------- 1 boincer umatlas 916967969 Nov 24 10:07 HITS.47556137._006672.pool.root.1
[2025-11-24 10:09:16] -rw------- 1 boincer umatlas      1059 Nov 24 10:08 memory_monitor_summary.json
[2025-11-24 10:09:16] -rw------- 1 boincer umatlas   1516227 Nov 24 10:08 agis_ddmendpoints.agis.ALL.json
[2025-11-24 10:09:16] -rw------- 1 boincer umatlas   1913754 Nov 24 10:08 log.47556137._006672.job.log.tgz.1
[2025-11-24 10:09:16] -rw------- 1 boincer umatlas      8674 Nov 24 10:08 heartbeat.json
[2025-11-24 10:09:16] -rw-r--r-- 1 boincer umatlas      5913 Nov 24 10:09 init_data.xml
[2025-11-24 10:09:16] -rw-r--r-- 1 boincer umatlas      8192 Nov 24 10:09 boinc_mmap_file
[2025-11-24 10:09:16] -rw-r--r-- 1 boincer umatlas        29 Nov 24 10:09 wrapper_checkpoint.txt
[2025-11-24 10:09:16] -rw------- 1 boincer umatlas        95 Nov 24 10:09 pilot_heartbeat.json
[2025-11-24 10:09:16] -rw------- 1 boincer umatlas       745 Nov 24 10:09 pilotlog.txt
[2025-11-24 10:09:16] -rw------- 1 boincer umatlas   5514311 Nov 24 10:09 log.47556137._006672.job.log.1
[2025-11-24 10:09:16] -rw------- 1 boincer umatlas       353 Nov 24 10:09 output.list
[2025-11-24 10:09:16] -rw-r--r-- 1 boincer umatlas       620 Nov 24 10:09 runtime_log
[2025-11-24 10:09:16] -rw------- 1 boincer umatlas   7444480 Nov 24 10:09 result.tar.gz
[2025-11-24 10:09:16] -rw-r--r-- 1 boincer umatlas      9343 Nov 24 10:09 runtime_log.err
[2025-11-24 10:09:16] -rw------- 1 boincer umatlas       668 Nov 24 10:09 CxzNDm3YKh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmYUIKDmb1yjin.diag
[2025-11-24 10:09:16] -rw-r--r-- 1 boincer umatlas     21243 Nov 24 10:09 stderr.txt
[2025-11-24 10:09:16] HITS file was successfully produced:
[2025-11-24 10:09:16] -rw------- 1 boincer umatlas 916967969 Nov 24 10:07 shared/HITS.pool.root.1
[2025-11-24 10:09:16]  *** Contents of shared directory: ***
[2025-11-24 10:09:16] total 1305536
[2025-11-24 10:09:16] -rw-r--r-- 2 boincer umatlas 411829867 Nov 23 23:02 ATLAS.root_0
[2025-11-24 10:09:16] -rw-r--r-- 2 boincer umatlas     15847 Nov 23 23:02 start_atlas.sh
[2025-11-24 10:09:16] -rw-r--r-- 2 boincer umatlas    590097 Nov 23 23:02 input.tar.gz
[2025-11-24 10:09:16] -rw------- 1 boincer umatlas 916967969 Nov 24 10:07 HITS.pool.root.1
[2025-11-24 10:09:16] -rw------- 1 boincer umatlas   7444480 Nov 24 10:09 result.tar.gz
10:09:18 (26718): run_atlas exited; CPU time 307725.530078
10:09:18 (26718): called boinc_finish(0)

</stderr_txt>
]]>

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