Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:03:42 (849104): wrapper (7.7.26015): starting
00:03:42 (849104): wrapper: running run_atlas (--nthreads 9)
[2025-11-24 00:03:42] Arguments: --nthreads 9
[2025-11-24 00:03:42] Threads: 9
[2025-11-24 00:03:42] Checking for CVMFS
[2025-11-24 00:03:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 00:03:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 00:03:43] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 00:03:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 00:03:43] 2.13.3.0 8980 26728 333824 153233 3 172 31780571 32935937 24955 16776704 0 148057465 99.772 84958533 32879 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-24 00:03:43] CVMFS is ok
[2025-11-24 00:03:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 00:03:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 00:03:43] Further information can be found at the LHC@home message board.
[2025-11-24 00:03:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 00:03:43] Checking for apptainer binary...
[2025-11-24 00:03:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 00:03:43] Running /usr/bin/apptainer --version
[2025-11-24 00:03:43] apptainer version 1.4.4-1.el9
[2025-11-24 00:03:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 00:03:43] c-5-4.aglt2.org
[2025-11-24 00:03:43] apptainer works
[2025-11-24 00:03:44] Set ATHENA_PROC_NUMBER=9
[2025-11-24 00:03:44] Set ATHENA_CORE_NUMBER=9
[2025-11-24 00:03:44] Starting ATLAS job with PandaID=6895355707
[2025-11-24 00:03:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
13:45:42 (3403081): wrapper (7.7.26015): starting
13:45:42 (3403081): wrapper: running run_atlas (--nthreads 9)
[2025-11-24 13:45:42] Arguments: --nthreads 9
[2025-11-24 13:45:42] Threads: 9
[2025-11-24 13:45:42] This job has been restarted, cleaning up previous attempt
[2025-11-24 13:45:42] Checking for CVMFS
[2025-11-24 13:45:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 13:45:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 13:45:42] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 13:45:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 13:45:42] 2.13.3.0 8980 27550 318872 153255 2 211 29677620 32935936 23732 16776704 0 150968369 99.766 88954013 32767 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-24 13:45:42] CVMFS is ok
[2025-11-24 13:45:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 13:45:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 13:45:42] Further information can be found at the LHC@home message board.
[2025-11-24 13:45:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 13:45:42] Checking for apptainer binary...
[2025-11-24 13:45:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 13:45:42] Running /usr/bin/apptainer --version
[2025-11-24 13:45:42] apptainer version 1.4.4-1.el9
[2025-11-24 13:45:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 13:45:43] c-5-4.aglt2.org
[2025-11-24 13:45:43] apptainer works
[2025-11-24 13:45:43] Set ATHENA_PROC_NUMBER=9
[2025-11-24 13:45:43] Set ATHENA_CORE_NUMBER=9
[2025-11-24 13:45:43] Starting ATLAS job with PandaID=6895355707
[2025-11-24 13:45:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
00:20:04 (3403081): BOINC client no longer exists - exiting
00:20:04 (3403081): timer handler: client dead, exiting
00:30:39 (1184752): wrapper (7.7.26015): starting
00:30:39 (1184752): wrapper: running run_atlas (--nthreads 9)
[2025-11-25 00:30:39] Arguments: --nthreads 9
[2025-11-25 00:30:39] Threads: 9
[2025-11-25 00:30:39] This job has been restarted, cleaning up previous attempt
[2025-11-25 00:30:39] Checking for CVMFS
[2025-11-25 00:30:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 00:30:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 00:30:39] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 00:30:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 00:30:39] 2.13.3.0 8980 28195 320120 153272 3 111 17773321 32935936 22265 16776704 0 153250909 99.765 90464893 32800 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 00:30:39] CVMFS is ok
[2025-11-25 00:30:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 00:30:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 00:30:39] Further information can be found at the LHC@home message board.
[2025-11-25 00:30:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 00:30:39] Checking for apptainer binary...
[2025-11-25 00:30:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 00:30:39] Running /usr/bin/apptainer --version
[2025-11-25 00:30:39] apptainer version 1.4.4-1.el9
[2025-11-25 00:30:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 00:30:40] c-5-4.aglt2.org
[2025-11-25 00:30:40] apptainer works
[2025-11-25 00:30:40] Set ATHENA_PROC_NUMBER=9
[2025-11-25 00:30:40] Set ATHENA_CORE_NUMBER=9
[2025-11-25 00:30:40] Starting ATLAS job with PandaID=6895355707
[2025-11-25 00:30:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 20:46:21]  *** The last 200 lines of the pilot log: ***
[2025-11-25 20:46:21] 2025-11-26 01:45:46,972 | INFO     | sum of square deviations: 529144421957.44727
[2025-11-25 20:46:21] 2025-11-26 01:45:47,008 | INFO     | sum of deviations: 3573683417594.932
[2025-11-25 20:46:21] 2025-11-26 01:45:47,008 | INFO     | mean x: 1764085097.9205022
[2025-11-25 20:46:21] 2025-11-26 01:45:47,008 | INFO     | mean y: 3077784.851882845
[2025-11-25 20:46:21] 2025-11-26 01:45:47,008 | INFO     | intersect: -11911026191.419096
[2025-11-25 20:46:21] 2025-11-26 01:45:47,010 | INFO     | chi2: 7.05514146125252
[2025-11-25 20:46:21] 2025-11-26 01:45:47,011 | INFO     | sum of square deviations: 522530774641.42865
[2025-11-25 20:46:21] 2025-11-26 01:45:47,047 | INFO     | sum of deviations: 4024844736501.7207
[2025-11-25 20:46:21] 2025-11-26 01:45:47,048 | INFO     | mean x: 1764084945.4285715
[2025-11-25 20:46:21] 2025-11-26 01:45:47,048 | INFO     | mean y: 3088187.473109244
[2025-11-25 20:46:21] 2025-11-26 01:45:47,048 | INFO     | intersect: -13584949784.495897
[2025-11-25 20:46:21] 2025-11-26 01:45:47,049 | INFO     | chi2: 3.572853495152038
[2025-11-25 20:46:21] 2025-11-26 01:45:47,049 | INFO     | current chi2=3.572853495152038 (change=49.35815936824973 %)
[2025-11-25 20:46:21] 2025-11-26 01:45:47,051 | INFO     | sum of square deviations: 515972477200.25385
[2025-11-25 20:46:21] 2025-11-26 01:45:47,099 | INFO     | sum of deviations: 4254806735658.1616
[2025-11-25 20:46:21] 2025-11-26 01:45:47,100 | INFO     | mean x: 1764084792.936709
[2025-11-25 20:46:21] 2025-11-26 01:45:47,100 | INFO     | mean y: 3093531.3088607597
[2025-11-25 20:46:21] 2025-11-26 01:45:47,100 | INFO     | intersect: -14543883664.03901
[2025-11-25 20:46:21] 2025-11-26 01:45:47,102 | INFO     | chi2: 2.431502905882857
[2025-11-25 20:46:21] 2025-11-26 01:45:47,102 | INFO     | current chi2=2.431502905882857 (change=31.9450710984334 %)
[2025-11-25 20:46:21] 2025-11-26 01:45:47,104 | INFO     | sum of square deviations: 509469224789.30853
[2025-11-25 20:46:21] 2025-11-26 01:45:47,170 | INFO     | sum of deviations: 4324319711264.963
[2025-11-25 20:46:21] 2025-11-26 01:45:47,171 | INFO     | mean x: 1764084640.4440677
[2025-11-25 20:46:21] 2025-11-26 01:45:47,171 | INFO     | mean y: 3095159.908474576
[2025-11-25 20:46:21] 2025-11-26 01:45:47,171 | INFO     | intersect: -14970264587.516516
[2025-11-25 20:46:21] 2025-11-26 01:45:47,172 | INFO     | chi2: 2.2192846206839922
[2025-11-25 20:46:21] 2025-11-26 01:45:47,172 | INFO     | current chi2=2.2192846206839922 (change=8.727864757447616 %)
[2025-11-25 20:46:21] 2025-11-26 01:45:47,173 | INFO     | right removable region: 1179
[2025-11-25 20:46:21] 2025-11-26 01:45:47,174 | INFO     | sum of square deviations: 522529738318.69507
[2025-11-25 20:46:21] 2025-11-26 01:45:47,208 | INFO     | sum of deviations: 3254628735010.3877
[2025-11-25 20:46:21] 2025-11-26 01:45:47,208 | INFO     | mean x: 1764085250.4243698
[2025-11-25 20:46:21] 2025-11-26 01:45:47,208 | INFO     | mean y: 3085131.8210084033
[2025-11-25 20:46:21] 2025-11-26 01:45:47,208 | INFO     | intersect: -10984696282.32962
[2025-11-25 20:46:21] 2025-11-26 01:45:47,210 | INFO     | chi2: 5.151627232205801
[2025-11-25 20:46:21] 2025-11-26 01:45:47,210 | INFO     | current chi2=5.151627232205801 (change=26.980525330370664 %)
[2025-11-25 20:46:21] 2025-11-26 01:45:47,212 | INFO     | sum of square deviations: 515970550598.61633
[2025-11-25 20:46:21] 2025-11-26 01:45:47,245 | INFO     | sum of deviations: 3136441357834.987
[2025-11-25 20:46:21] 2025-11-26 01:45:47,245 | INFO     | mean x: 1764085402.9265823
[2025-11-25 20:46:21] 2025-11-26 01:45:47,245 | INFO     | mean y: 3087879.3561181435
[2025-11-25 20:46:21] 2025-11-26 01:45:47,245 | INFO     | intersect: -10720296255.790234
[2025-11-25 20:46:21] 2025-11-26 01:45:47,247 | INFO     | chi2: 5.051427127533812
[2025-11-25 20:46:21] 2025-11-26 01:45:47,247 | INFO     | current chi2=5.051427127533812 (change=1.9450185379403944 %)
[2025-11-25 20:46:21] 2025-11-26 01:45:47,247 | INFO     | left removable region: 20
[2025-11-25 20:46:21] 2025-11-26 01:45:47,248 | INFO     | sum of square deviations: 482749056135.4847
[2025-11-25 20:46:21] 2025-11-26 01:45:47,284 | INFO     | sum of deviations: 3699202813049.823
[2025-11-25 20:46:21] 2025-11-26 01:45:47,284 | INFO     | mean x: 1764085219.953408
[2025-11-25 20:46:21] 2025-11-26 01:45:47,285 | INFO     | mean y: 3109686.8300258843
[2025-11-25 20:46:21] 2025-11-26 01:45:47,285 | INFO     | intersect: -13514698220.141432
[2025-11-25 20:46:21] 2025-11-26 01:45:47,286 | INFO     | chi2: 0.1327645664122512
[2025-11-25 20:46:21] 2025-11-26 01:45:47,286 | INFO     | current memory leak: 7.66 B/s (using 1159 data points, chi2=0.13)
[2025-11-25 20:46:21] 2025-11-26 01:45:47,287 | INFO     | could have reported an average CPU frequency of 2600 MHz (43 samples)
[2025-11-25 20:46:21] 2025-11-26 01:45:47,288 | INFO     | ..............................
[2025-11-25 20:46:21] 2025-11-26 01:45:47,288 | INFO     | . Timing measurements:
[2025-11-25 20:46:21] 2025-11-26 01:45:47,288 | INFO     | . get job = 0 s
[2025-11-25 20:46:21] 2025-11-26 01:45:47,288 | INFO     | . initial setup = 2 s
[2025-11-25 20:46:21] 2025-11-26 01:45:47,288 | INFO     | . payload setup = 5 s
[2025-11-25 20:46:21] 2025-11-26 01:45:47,288 | INFO     | . stage-in = 0 s
[2025-11-25 20:46:21] 2025-11-26 01:45:47,288 | INFO     | . payload execution = 72858 s
[2025-11-25 20:46:21] 2025-11-26 01:45:47,288 | INFO     | . stage-out = 5 s
[2025-11-25 20:46:21] 2025-11-26 01:45:47,288 | INFO     | . log creation = 0 s
[2025-11-25 20:46:21] 2025-11-26 01:45:47,288 | INFO     | ..............................
[2025-11-25 20:46:21] 2025-11-26 01:45:47,492 | INFO     | 
[2025-11-25 20:46:21] 2025-11-26 01:45:47,493 | INFO     | job summary report
[2025-11-25 20:46:21] 2025-11-26 01:45:47,493 | INFO     | --------------------------------------------------
[2025-11-25 20:46:21] 2025-11-26 01:45:47,493 | INFO     | PanDA job id: 6895355707
[2025-11-25 20:46:21] 2025-11-26 01:45:47,493 | INFO     | task id: 47556137
[2025-11-25 20:46:21] 2025-11-26 01:45:47,493 | INFO     | errors: (none)
[2025-11-25 20:46:21] 2025-11-26 01:45:47,493 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 20:46:21] 2025-11-26 01:45:47,493 | INFO     | pilot state: finished 
[2025-11-25 20:46:21] 2025-11-26 01:45:47,494 | INFO     | transexitcode: 0
[2025-11-25 20:46:21] 2025-11-26 01:45:47,494 | INFO     | exeerrorcode: 0
[2025-11-25 20:46:21] 2025-11-26 01:45:47,494 | INFO     | exeerrordiag: 
[2025-11-25 20:46:21] 2025-11-26 01:45:47,494 | INFO     | exitcode: 0
[2025-11-25 20:46:21] 2025-11-26 01:45:47,494 | INFO     | exitmsg: OK
[2025-11-25 20:46:21] 2025-11-26 01:45:47,494 | INFO     | cpuconsumptiontime: 299842 s
[2025-11-25 20:46:21] 2025-11-26 01:45:47,494 | INFO     | nevents: 1000
[2025-11-25 20:46:21] 2025-11-26 01:45:47,494 | INFO     | neventsw: 0
[2025-11-25 20:46:21] 2025-11-26 01:45:47,495 | INFO     | pid: 1229677
[2025-11-25 20:46:21] 2025-11-26 01:45:47,495 | INFO     | pgrp: 1229677
[2025-11-25 20:46:21] 2025-11-26 01:45:47,495 | INFO     | corecount: 9
[2025-11-25 20:46:21] 2025-11-26 01:45:47,495 | INFO     | event service: False
[2025-11-25 20:46:21] 2025-11-26 01:45:47,495 | INFO     | sizes: {0: 2284310, 4: 2284572, 11: 2284600, 72864: 2343259, 72870: 2352258, 72872: 2352314, 72880: 2352688}
[2025-11-25 20:46:21] 2025-11-26 01:45:47,495 | INFO     | --------------------------------------------------
[2025-11-25 20:46:21] 2025-11-26 01:45:47,495 | INFO     | 
[2025-11-25 20:46:21] 2025-11-26 01:45:47,495 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-25 20:46:21] 2025-11-26 01:45:47,642 | INFO     | time since job start (72896s) is within the limit (172800.0s)
[2025-11-25 20:46:21] 2025-11-26 01:45:47,650 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 20:46:21] 2025-11-26 01:45:47,650 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 20:46:21] 2025-11-26 01:45:47,651 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 20:46:21] 2025-11-26 01:45:47,651 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 20:46:21] 2025-11-26 01:45:47,651 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 20:46:21] 2025-11-26 01:45:47,651 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 20:46:21] 2025-11-26 01:45:47,651 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 20:46:21] 2025-11-26 01:45:47,651 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 20:46:21] 2025-11-26 01:45:47,651 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 20:46:21] 2025-11-26 01:45:47,651 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 20:46:21] 2025-11-26 01:45:47,651 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 20:46:21] 2025-11-26 01:45:47,651 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 20:46:21] 2025-11-26 01:45:47,652 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 20:46:21] 2025-11-26 01:45:47,652 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 20:46:21] 2025-11-26 01:45:47,652 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 20:46:21] 2025-11-26 01:45:47,652 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 20:46:21] 2025-11-26 01:45:47,652 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 20:46:21] 2025-11-26 01:45:47,652 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 20:46:21] 2025-11-26 01:45:47,652 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 20:46:21] 2025-11-26 01:45:47,652 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 20:46:21] 2025-11-26 01:45:47,653 | INFO     | job 6895355707 has completed (purged errors)
[2025-11-25 20:46:21] 2025-11-26 01:45:47,653 | INFO     | overall cleanup function is called
[2025-11-25 20:46:21] 2025-11-26 01:45:48,685 | INFO     | --- collectZombieJob: --- 10, [1229677]
[2025-11-25 20:46:21] 2025-11-26 01:45:48,686 | INFO     | zombie collector waiting for pid 1229677
[2025-11-25 20:46:21] 2025-11-26 01:45:48,686 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 20:46:21] 2025-11-26 01:45:48,686 | INFO     | collected zombie processes
[2025-11-25 20:46:21] 2025-11-26 01:45:48,686 | INFO     | will attempt to kill all subprocesses of pid=1229677
[2025-11-25 20:46:21] 2025-11-26 01:45:49,178 | INFO     | process IDs to be killed: [1229677] (in reverse order)
[2025-11-25 20:46:21] 2025-11-26 01:45:49,319 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 20:46:21] 2025-11-26 01:45:49,320 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 20:46:21] 2025-11-26 01:45:49,357 | INFO     | did not find any defunct processes belonging to 1229677
[2025-11-25 20:46:21] 2025-11-26 01:45:49,374 | INFO     | did not find any defunct processes belonging to 1229677
[2025-11-25 20:46:21] 2025-11-26 01:45:49,376 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 20:46:21] 2025-11-26 01:45:49,376 | INFO     | ready for new job
[2025-11-25 20:46:21] 2025-11-26 01:45:49,376 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 20:46:21] 2025-11-26 01:45:49,383 | INFO     | ***************************************
[2025-11-25 20:46:21] 2025-11-26 01:45:49,383 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 20:46:21] 2025-11-26 01:45:49,383 | INFO     | ***************************************
[2025-11-25 20:46:21] 2025-11-26 01:45:49,383 | INFO     | 
[2025-11-25 20:46:21] 2025-11-26 01:45:49,385 | INFO     | architecture information:
[2025-11-25 20:46:21] 2025-11-26 01:45:49,387 | INFO     | executing command: cat /etc/os-release
[2025-11-25 20:46:21] 2025-11-26 01:45:49,407 | INFO     | cat /etc/os-release:
[2025-11-25 20:46:21] NAME="CentOS Linux"
[2025-11-25 20:46:21] VERSION="7 (Core)"
[2025-11-25 20:46:21] ID="centos"
[2025-11-25 20:46:21] ID_LIKE="rhel fedora"
[2025-11-25 20:46:21] VERSION_ID="7"
[2025-11-25 20:46:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 20:46:21] ANSI_COLOR="0;31"
[2025-11-25 20:46:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 20:46:21] HOME_URL="https://www.centos.org/"
[2025-11-25 20:46:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 20:46:21] 
[2025-11-25 20:46:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 20:46:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 20:46:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 20:46:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 20:46:21] 
[2025-11-25 20:46:21] 2025-11-26 01:45:49,408 | INFO     | ***************************************
[2025-11-25 20:46:21] 2025-11-26 01:45:49,911 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-25 20:46:21] 2025-11-26 01:45:49,929 | INFO     | sufficient remaining disk space (69371691008 B)
[2025-11-25 20:46:21] 2025-11-26 01:45:49,929 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 20:46:21] 2025-11-26 01:45:49,930 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 20:46:21] 2025-11-26 01:45:49,930 | INFO     | update_server=False
[2025-11-25 20:46:21] 2025-11-26 01:45:49,930 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 20:46:21] 2025-11-26 01:45:49,930 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 20:46:21] 2025-11-26 01:45:49,930 | INFO     | aborting loop
[2025-11-25 20:46:21] 2025-11-26 01:45:50,145 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 20:46:21] 2025-11-26 01:45:50,166 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 20:46:21] 2025-11-26 01:45:50,200 | INFO     | all job control threads have been joined
[2025-11-25 20:46:21] 2025-11-26 01:45:50,603 | INFO     | all payload control threads have been joined
[2025-11-25 20:46:21] 2025-11-26 01:45:50,935 | INFO     | [job] retrieve thread has finished
[2025-11-25 20:46:21] 2025-11-26 01:45:50,936 | INFO     | [job] job monitor thread has finished
[2025-11-25 20:46:21] 2025-11-26 01:45:51,002 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 20:46:21] 2025-11-26 01:45:51,005 | INFO     | all data control threads have been joined
[2025-11-25 20:46:21] 2025-11-26 01:45:51,207 | INFO     | [job] control thread has finished
[2025-11-25 20:46:21] 2025-11-26 01:45:51,499 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 20:46:21] 2025-11-26 01:45:51,608 | INFO     | [payload] control thread has finished
[2025-11-25 20:46:21] 2025-11-26 01:45:51,930 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 20:46:21] 2025-11-26 01:45:51,976 | INFO     | [payload] validate_post thread has finished
[2025-11-25 20:46:21] 2025-11-26 01:45:52,011 | INFO     | [data] control thread has finished
[2025-11-25 20:46:21] 2025-11-26 01:45:52,070 | INFO     | [data] copytool_in thread has finished
[2025-11-25 20:46:21] 2025-11-26 01:45:52,131 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 20:46:21] 2025-11-26 01:45:52,151 | INFO     | [data] copytool_out thread has finished
[2025-11-25 20:46:21] 2025-11-26 01:45:52,245 | INFO     | [job] validate thread has finished
[2025-11-25 20:46:21] 2025-11-26 01:45:52,336 | INFO     | [payload] failed_post thread has finished
[2025-11-25 20:46:21] 2025-11-26 01:45:52,501 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 20:46:21] 2025-11-26 01:45:53,506 | INFO     | [job] queue monitor thread has finished
[2025-11-25 20:46:21] 2025-11-26 01:45:54,172 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 20:46:21] 2025-11-26 01:46:00,562 [wrapper] supervise_pilot (15 min periods counter: 82)
[2025-11-25 20:46:21] 2025-11-26 01:46:03,320 | INFO     | [monitor] cgroup control has ended
[2025-11-25 20:46:21] 2025-11-26 01:46:05,336 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140196766488384)>', '<ExcThread(monitor, started 140196054038272)>']
[2025-11-25 20:46:21] 2025-11-26 01:46:10,362 | INFO     | all workflow threads have been joined
[2025-11-25 20:46:21] 2025-11-26 01:46:10,363 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 20:46:21] 2025-11-26 01:46:10,364 | INFO     | traces error code: 0
[2025-11-25 20:46:21] 2025-11-26 01:46:10,365 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 20:46:21] 2025-11-26 01:46:21,321 | INFO     | PID=1202978 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 20:46:21] 2025-11-26 01:46:21,322 | INFO     | .. there are 42 such processes running
[2025-11-25 20:46:21] 2025-11-26 01:46:21,322 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 20:46:21] 2025-11-26 01:46:21,322 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 20:46:21] 2025-11-26 01:46:21,322 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 20:46:21] 2025-11-26 01:46:21,322 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 20:46:21] 2025-11-26 01:46:21,322 | CRITICAL | thread 'MainThread' is not alive
[2025-11-25 20:46:21] 2025-11-26 01:46:21,322 | INFO     | [monitor] control thread has ended
[2025-11-25 20:46:21] 2025-11-26 01:46:21,499 [wrapper] ==== pilot stdout END ====
[2025-11-25 20:46:21] 2025-11-26 01:46:21,506 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 20:46:21] 2025-11-26 01:46:21,509 [wrapper] pilotpid: 1202978
[2025-11-25 20:46:21] 2025-11-26 01:46:21,516 [wrapper] Pilot exit status: 0
[2025-11-25 20:46:21] 2025-11-26 01:46:21,532 [wrapper] pandaids: 6895355707 6895355707 6895355707
[2025-11-25 20:46:21] 2025-11-26 01:46:21,614 [wrapper] cleanup supervisor_pilot 1091032 1202979
[2025-11-25 20:46:21] 2025-11-26 01:46:21,618 [wrapper] Test setup, not cleaning
[2025-11-25 20:46:21] 2025-11-26 01:46:21,621 [wrapper] apfmon messages muted
[2025-11-25 20:46:21] 2025-11-26 01:46:21,624 [wrapper] ==== wrapper stdout END ====
[2025-11-25 20:46:21] 2025-11-26 01:46:21,627 [wrapper] ==== wrapper stderr END ====
[2025-11-25 20:46:21]  *** Error codes and diagnostics ***
[2025-11-25 20:46:21]     "exeErrorCode": 0,
[2025-11-25 20:46:21]     "exeErrorDiag": "",
[2025-11-25 20:46:21]     "pilotErrorCode": 0,
[2025-11-25 20:46:21]     "pilotErrorDiag": "",
[2025-11-25 20:46:21]  *** Listing of results directory ***
[2025-11-25 20:46:21] total 1728312
[2025-11-25 20:46:21] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-25 20:46:21] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 03:03 pilot3.tar.gz
[2025-11-25 20:46:21] -rwx------. 1 boincer umatlas     36292 Nov 23 03:23 runpilot2-wrapper.sh
[2025-11-25 20:46:21] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 03:23 queuedata.json
[2025-11-25 20:46:21] -rw-r--r--. 1 boincer umatlas       100 Nov 24 00:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 20:46:21] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 00:03 run_atlas
[2025-11-25 20:46:21] -rw-r--r--. 1 boincer umatlas       105 Nov 24 00:03 job.xml
[2025-11-25 20:46:21] -rw-r--r--. 3 boincer umatlas 410049983 Nov 24 00:03 EVNT.47483658._000671.pool.root.1
[2025-11-25 20:46:21] -rw-r--r--. 3 boincer umatlas 410049983 Nov 24 00:03 ATLAS.root_0
[2025-11-25 20:46:21] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 00:03 start_atlas.sh
[2025-11-25 20:46:21] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 00:03 shared
[2025-11-25 20:46:21] -rw-r--r--. 2 boincer umatlas    590103 Nov 24 00:03 input.tar.gz
[2025-11-25 20:46:21] -rw-r--r--. 1 boincer umatlas         0 Nov 24 00:03 boinc_lockfile
[2025-11-25 20:46:21] -rw-r--r--. 1 boincer umatlas      2786 Nov 25 00:30 pandaJob.out
[2025-11-25 20:46:21] -rw-------. 1 boincer umatlas        57 Nov 25 00:30 setup.sh.local
[2025-11-25 20:46:21] -rw-------. 1 boincer umatlas    991801 Nov 25 00:30 agis_schedconf.cvmfs.json
[2025-11-25 20:46:21] -rw-r--r--. 1 boincer umatlas       534 Nov 25 20:30 boinc_task_state.xml
[2025-11-25 20:46:21] -rw-r--r--. 1 boincer umatlas      6660 Nov 25 20:37 init_data.xml
[2025-11-25 20:46:21] -rw-------. 1 boincer umatlas 922521040 Nov 25 20:44 HITS.47556137._006670.pool.root.1
[2025-11-25 20:46:21] -rw-------. 1 boincer umatlas      1068 Nov 25 20:45 memory_monitor_summary.json
[2025-11-25 20:46:21] -rw-------. 1 boincer umatlas   1516240 Nov 25 20:45 agis_ddmendpoints.agis.ALL.json
[2025-11-25 20:46:21] -rw-------. 1 boincer umatlas   2405771 Nov 25 20:45 log.47556137._006670.job.log.tgz.1
[2025-11-25 20:46:21] -rw-------. 1 boincer umatlas        96 Nov 25 20:45 pilot_heartbeat.json
[2025-11-25 20:46:21] -rw-------. 1 boincer umatlas      8629 Nov 25 20:45 heartbeat.json
[2025-11-25 20:46:21] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 20:46 boinc_mmap_file
[2025-11-25 20:46:21] -rw-r--r--. 1 boincer umatlas        30 Nov 25 20:46 wrapper_checkpoint.txt
[2025-11-25 20:46:21] -rw-------. 1 boincer umatlas       893 Nov 25 20:46 pilotlog.txt
[2025-11-25 20:46:21] -rw-------. 1 boincer umatlas   9215092 Nov 25 20:46 log.47556137._006670.job.log.1
[2025-11-25 20:46:21] -rw-------. 1 boincer umatlas       353 Nov 25 20:46 output.list
[2025-11-25 20:46:21] -rw-r--r--. 1 boincer umatlas       620 Nov 25 20:46 runtime_log
[2025-11-25 20:46:21] -rw-------. 1 boincer umatlas  11642880 Nov 25 20:46 result.tar.gz
[2025-11-25 20:46:21] -rw-------. 1 boincer umatlas       911 Nov 25 20:46 xYyNDm3YKh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmXUIKDmkV7vun.diag
[2025-11-25 20:46:21] -rw-r--r--. 1 boincer umatlas      9413 Nov 25 20:46 runtime_log.err
[2025-11-25 20:46:21] -rw-r--r--. 1 boincer umatlas     25579 Nov 25 20:46 stderr.txt
[2025-11-25 20:46:21] HITS file was successfully produced:
[2025-11-25 20:46:21] -rw-------. 1 boincer umatlas 922521040 Nov 25 20:44 shared/HITS.pool.root.1
[2025-11-25 20:46:21]  *** Contents of shared directory: ***
[2025-11-25 20:46:21] total 1313316
[2025-11-25 20:46:21] -rw-r--r--. 3 boincer umatlas 410049983 Nov 24 00:03 ATLAS.root_0
[2025-11-25 20:46:21] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 00:03 start_atlas.sh
[2025-11-25 20:46:21] -rw-r--r--. 2 boincer umatlas    590103 Nov 24 00:03 input.tar.gz
[2025-11-25 20:46:21] -rw-------. 1 boincer umatlas 922521040 Nov 25 20:44 HITS.pool.root.1
[2025-11-25 20:46:21] -rw-------. 1 boincer umatlas  11642880 Nov 25 20:46 result.tar.gz
20:46:23 (1184752): run_atlas exited; CPU time 302144.055204
20:46:23 (1184752): called boinc_finish(0)

</stderr_txt>
]]>

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