Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:04:01 (1053535): wrapper (7.7.26015): starting
00:04:01 (1053535): wrapper: running run_atlas (--nthreads 12)
[2025-11-24 00:04:01] Arguments: --nthreads 12
[2025-11-24 00:04:01] Threads: 12
[2025-11-24 00:04:01] Checking for CVMFS
[2025-11-24 00:04:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 00:04:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 00:04:01] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 00:04:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 00:04:01] 2.13.2.0 5664 30450 201856 153233 1 275 38425409 39288833 7886 16776704 0 22259798 99.625 18709297 32235 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-24 00:04:01] CVMFS is ok
[2025-11-24 00:04:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 00:04:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 00:04:01] Further information can be found at the LHC@home message board.
[2025-11-24 00:04:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 00:04:01] Checking for apptainer binary...
[2025-11-24 00:04:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 00:04:01] Running /usr/bin/apptainer --version
[2025-11-24 00:04:01] apptainer version 1.4.4-1.el9
[2025-11-24 00:04:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 00:04:02] c-210-30.aglt2.org
[2025-11-24 00:04:02] apptainer works
[2025-11-24 00:04:02] Set ATHENA_PROC_NUMBER=12
[2025-11-24 00:04:02] Set ATHENA_CORE_NUMBER=12
[2025-11-24 00:04:02] Starting ATLAS job with PandaID=6895355685
[2025-11-24 00:04:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 11:33:05]  *** The last 200 lines of the pilot log: ***
[2025-11-25 11:33:05] 2025-11-25 16:32:14,094 | INFO     | .. there are 9 such processes running
[2025-11-25 11:33:05] 2025-11-25 16:32:15,098 | INFO     | time since job start (127665s) is within the limit (172800.0s)
[2025-11-25 11:33:05] 2025-11-25 16:32:15,596 | INFO     | monitor loop #7421: job 0:6895355685 is in state 'finished'
[2025-11-25 11:33:05] 2025-11-25 16:32:15,597 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 11:33:05] 2025-11-25 16:32:17,105 | INFO     | time since job start (127667s) is within the limit (172800.0s)
[2025-11-25 11:33:05] 2025-11-25 16:32:18,101 | INFO     | monitor loop #7422: job 0:6895355685 is in state 'finished'
[2025-11-25 11:33:05] 2025-11-25 16:32:18,102 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 11:33:05] 2025-11-25 16:32:19,116 | INFO     | time since job start (127669s) is within the limit (172800.0s)
[2025-11-25 11:33:05] 2025-11-25 16:32:19,117 | INFO     | 127672s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-25 11:33:05] 2025-11-25 16:32:20,619 | INFO     | monitor loop #7423: job 0:6895355685 is in state 'finished'
[2025-11-25 11:33:05] 2025-11-25 16:32:20,620 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 11:33:05] 2025-11-25 16:32:21,123 | INFO     | time since job start (127671s) is within the limit (172800.0s)
[2025-11-25 11:33:05] 2025-11-25 16:32:21,420 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 11:33:05] 2025-11-25 16:32:21,472 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2599.84905
[2025-11-25 11:33:05] 2025-11-25 16:32:21,580 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6895355685/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 11:33:05] 2025-11-25 16:32:21,581 | INFO     | extracted standard info from prmon json
[2025-11-25 11:33:05] 2025-11-25 16:32:21,631 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 11:33:05] 2025-11-25 16:32:21,631 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 11:33:05] 2025-11-25 16:32:22,038 | INFO     | fitting pss+swap vs Time
[2025-11-25 11:33:05] 2025-11-25 16:32:22,091 | INFO     | sum of square deviations: 2835654173557.0127
[2025-11-25 11:33:05] 2025-11-25 16:32:22,561 | INFO     | sum of deviations: 10094786115950.404
[2025-11-25 11:33:05] 2025-11-25 16:32:22,562 | INFO     | mean x: 1764024490.5810616
[2025-11-25 11:33:05] 2025-11-25 16:32:22,562 | INFO     | mean y: 3499619.4959349595
[2025-11-25 11:33:05] 2025-11-25 16:32:22,562 | INFO     | intersect: -6276338769.039548
[2025-11-25 11:33:05] 2025-11-25 16:32:22,565 | INFO     | chi2: 25.266838371048085
[2025-11-25 11:33:05] 2025-11-25 16:32:22,568 | INFO     | sum of square deviations: 2815360185744.867
[2025-11-25 11:33:05] 2025-11-25 16:32:22,820 | INFO     | sum of deviations: 11070492060414.123
[2025-11-25 11:33:05] 2025-11-25 16:32:22,820 | INFO     | mean x: 1764024338.058485
[2025-11-25 11:33:05] 2025-11-25 16:32:22,820 | INFO     | mean y: 3506951.7205177373
[2025-11-25 11:33:05] 2025-11-25 16:32:22,820 | INFO     | intersect: -6932947405.961251
[2025-11-25 11:33:05] 2025-11-25 16:32:22,872 | INFO     | chi2: 21.029981750576646
[2025-11-25 11:33:05] 2025-11-25 16:32:22,873 | INFO     | current chi2=21.029981750576646 (change=16.768447869307725 %)
[2025-11-25 11:33:05] 2025-11-25 16:32:22,873 | INFO     | right removable region: 2085
[2025-11-25 11:33:05] 2025-11-25 16:32:22,925 | INFO     | sum of square deviations: 2815358168736.1987
[2025-11-25 11:33:05] 2025-11-25 16:32:23,193 | INFO     | time since job start (127673s) is within the limit (172800.0s)
[2025-11-25 11:33:05] 2025-11-25 16:32:23,256 | INFO     | monitor loop #7424: job 0:6895355685 is in state 'finished'
[2025-11-25 11:33:05] 2025-11-25 16:32:23,257 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 11:33:05] 2025-11-25 16:32:24,224 | INFO     | sum of deviations: 9178003862499.363
[2025-11-25 11:33:05] 2025-11-25 16:32:24,233 | INFO     | mean x: 1764024643.1112177
[2025-11-25 11:33:05] 2025-11-25 16:32:24,234 | INFO     | mean y: 3506507.851869607
[2025-11-25 11:33:05] 2025-11-25 16:32:24,234 | INFO     | intersect: -5747173873.70915
[2025-11-25 11:33:05] 2025-11-25 16:32:24,241 | INFO     | chi2: 22.000824156954213
[2025-11-25 11:33:05] 2025-11-25 16:32:24,241 | INFO     | current chi2=22.000824156954213 (change=12.92608978666766 %)
[2025-11-25 11:33:05] 2025-11-25 16:32:24,241 | INFO     | left removable region: 10
[2025-11-25 11:33:05] 2025-11-25 16:32:24,244 | INFO     | sum of square deviations: 2771052055674.46
[2025-11-25 11:33:05] 2025-11-25 16:32:25,056 | INFO     | sum of deviations: 10004628144646.486
[2025-11-25 11:33:05] 2025-11-25 16:32:25,056 | INFO     | mean x: 1764024612.6081927
[2025-11-25 11:33:05] 2025-11-25 16:32:25,057 | INFO     | mean y: 3517587.53686747
[2025-11-25 11:33:05] 2025-11-25 16:32:25,057 | INFO     | intersect: -6365330753.2978945
[2025-11-25 11:33:05] 2025-11-25 16:32:25,104 | INFO     | chi2: 16.72284594370557
[2025-11-25 11:33:05] 2025-11-25 16:32:25,104 | INFO     | current memory leak: 3.61 B/s (using 2075 data points, chi2=16.72)
[2025-11-25 11:33:05] 2025-11-25 16:32:25,106 | INFO     | could have reported an average CPU frequency of 2599 MHz (72 samples)
[2025-11-25 11:33:05] 2025-11-25 16:32:25,148 | INFO     | ..............................
[2025-11-25 11:33:05] 2025-11-25 16:32:25,148 | INFO     | . Timing measurements:
[2025-11-25 11:33:05] 2025-11-25 16:32:25,148 | INFO     | . get job = 0 s
[2025-11-25 11:33:05] 2025-11-25 16:32:25,148 | INFO     | . initial setup = 4 s
[2025-11-25 11:33:05] 2025-11-25 16:32:25,148 | INFO     | . payload setup = 18 s
[2025-11-25 11:33:05] 2025-11-25 16:32:25,148 | INFO     | . stage-in = 0 s
[2025-11-25 11:33:05] 2025-11-25 16:32:25,148 | INFO     | . payload execution = 127552 s
[2025-11-25 11:33:05] 2025-11-25 16:32:25,148 | INFO     | . stage-out = 18 s
[2025-11-25 11:33:05] 2025-11-25 16:32:25,148 | INFO     | . log creation = 4 s
[2025-11-25 11:33:05] 2025-11-25 16:32:25,149 | INFO     | ..............................
[2025-11-25 11:33:05] 2025-11-25 16:32:25,242 | INFO     | time since job start (127675s) is within the limit (172800.0s)
[2025-11-25 11:33:05] 2025-11-25 16:32:26,798 | INFO     | 
[2025-11-25 11:33:05] 2025-11-25 16:32:26,799 | INFO     | job summary report
[2025-11-25 11:33:05] 2025-11-25 16:32:26,799 | INFO     | --------------------------------------------------
[2025-11-25 11:33:05] 2025-11-25 16:32:26,799 | INFO     | PanDA job id: 6895355685
[2025-11-25 11:33:05] 2025-11-25 16:32:26,799 | INFO     | task id: 47556137
[2025-11-25 11:33:05] 2025-11-25 16:32:26,799 | INFO     | errors: (none)
[2025-11-25 11:33:05] 2025-11-25 16:32:26,799 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 11:33:05] 2025-11-25 16:32:26,799 | INFO     | pilot state: finished 
[2025-11-25 11:33:05] 2025-11-25 16:32:26,799 | INFO     | transexitcode: 0
[2025-11-25 11:33:05] 2025-11-25 16:32:26,799 | INFO     | exeerrorcode: 0
[2025-11-25 11:33:05] 2025-11-25 16:32:26,800 | INFO     | exeerrordiag: 
[2025-11-25 11:33:05] 2025-11-25 16:32:26,800 | INFO     | exitcode: 0
[2025-11-25 11:33:05] 2025-11-25 16:32:26,800 | INFO     | exitmsg: OK
[2025-11-25 11:33:05] 2025-11-25 16:32:26,800 | INFO     | cpuconsumptiontime: 314884 s
[2025-11-25 11:33:05] 2025-11-25 16:32:26,800 | INFO     | nevents: 1000
[2025-11-25 11:33:05] 2025-11-25 16:32:26,800 | INFO     | neventsw: 0
[2025-11-25 11:33:05] 2025-11-25 16:32:26,800 | INFO     | pid: 1068789
[2025-11-25 11:33:05] 2025-11-25 16:32:26,800 | INFO     | pgrp: 1068789
[2025-11-25 11:33:05] 2025-11-25 16:32:26,800 | INFO     | corecount: 12
[2025-11-25 11:33:05] 2025-11-25 16:32:26,800 | INFO     | event service: False
[2025-11-25 11:33:05] 2025-11-25 16:32:26,801 | INFO     | sizes: {0: 2297978, 1: 2298834, 12: 2298834, 13: 2299124, 23: 2299180, 127578: 2382165, 127579: 2382292, 127597: 2392138, 127600: 2392194, 127641: 2392440}
[2025-11-25 11:33:05] 2025-11-25 16:32:26,801 | INFO     | --------------------------------------------------
[2025-11-25 11:33:05] 2025-11-25 16:32:26,801 | INFO     | 
[2025-11-25 11:33:05] 2025-11-25 16:32:26,801 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-25 11:33:05] 2025-11-25 16:32:26,972 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 11:33:05] 2025-11-25 16:32:26,972 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 11:33:05] 2025-11-25 16:32:26,972 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 11:33:05] 2025-11-25 16:32:26,972 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 11:33:05] 2025-11-25 16:32:26,972 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 11:33:05] 2025-11-25 16:32:26,973 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 11:33:05] 2025-11-25 16:32:26,973 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 11:33:05] 2025-11-25 16:32:26,973 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 11:33:05] 2025-11-25 16:32:26,973 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 11:33:05] 2025-11-25 16:32:26,973 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 11:33:05] 2025-11-25 16:32:26,973 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 11:33:05] 2025-11-25 16:32:26,973 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 11:33:05] 2025-11-25 16:32:26,973 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 11:33:05] 2025-11-25 16:32:26,974 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 11:33:05] 2025-11-25 16:32:26,974 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 11:33:05] 2025-11-25 16:32:26,974 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 11:33:05] 2025-11-25 16:32:26,974 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 11:33:05] 2025-11-25 16:32:26,974 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 11:33:05] 2025-11-25 16:32:26,974 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 11:33:05] 2025-11-25 16:32:26,974 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 11:33:05] 2025-11-25 16:32:26,975 | INFO     | job 6895355685 has completed (purged errors)
[2025-11-25 11:33:05] 2025-11-25 16:32:26,975 | INFO     | overall cleanup function is called
[2025-11-25 11:33:05] 2025-11-25 16:32:28,189 | INFO     | --- collectZombieJob: --- 10, [1068789]
[2025-11-25 11:33:05] 2025-11-25 16:32:28,190 | INFO     | zombie collector waiting for pid 1068789
[2025-11-25 11:33:05] 2025-11-25 16:32:28,190 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 11:33:05] 2025-11-25 16:32:28,190 | INFO     | collected zombie processes
[2025-11-25 11:33:05] 2025-11-25 16:32:28,190 | INFO     | will attempt to kill all subprocesses of pid=1068789
[2025-11-25 11:33:05] 2025-11-25 16:32:30,362 | INFO     | process IDs to be killed: [1068789] (in reverse order)
[2025-11-25 11:33:05] 2025-11-25 16:32:30,716 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 11:33:05] 2025-11-25 16:32:30,716 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 11:33:05] 2025-11-25 16:32:30,782 | INFO     | did not find any defunct processes belonging to 1068789
[2025-11-25 11:33:05] 2025-11-25 16:32:30,846 | INFO     | did not find any defunct processes belonging to 1068789
[2025-11-25 11:33:05] 2025-11-25 16:32:30,907 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 11:33:05] 2025-11-25 16:32:30,907 | INFO     | ready for new job
[2025-11-25 11:33:05] 2025-11-25 16:32:30,907 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 11:33:05] 2025-11-25 16:32:31,000 | INFO     | ***************************************
[2025-11-25 11:33:05] 2025-11-25 16:32:31,000 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 11:33:05] 2025-11-25 16:32:31,000 | INFO     | ***************************************
[2025-11-25 11:33:05] 2025-11-25 16:32:31,000 | INFO     | 
[2025-11-25 11:33:05] 2025-11-25 16:32:31,002 | INFO     | architecture information:
[2025-11-25 11:33:05] 2025-11-25 16:32:31,045 | INFO     | executing command: cat /etc/os-release
[2025-11-25 11:33:05] 2025-11-25 16:32:31,188 | INFO     | cat /etc/os-release:
[2025-11-25 11:33:05] NAME="CentOS Linux"
[2025-11-25 11:33:05] VERSION="7 (Core)"
[2025-11-25 11:33:05] ID="centos"
[2025-11-25 11:33:05] ID_LIKE="rhel fedora"
[2025-11-25 11:33:05] VERSION_ID="7"
[2025-11-25 11:33:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 11:33:05] ANSI_COLOR="0;31"
[2025-11-25 11:33:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 11:33:05] HOME_URL="https://www.centos.org/"
[2025-11-25 11:33:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 11:33:05] 
[2025-11-25 11:33:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 11:33:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 11:33:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 11:33:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 11:33:05] 
[2025-11-25 11:33:05] 2025-11-25 16:32:31,189 | INFO     | ***************************************
[2025-11-25 11:33:05] 2025-11-25 16:32:31,692 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-25 11:33:05] 2025-11-25 16:32:31,749 | INFO     | sufficient remaining disk space (48853155840 B)
[2025-11-25 11:33:05] 2025-11-25 16:32:31,749 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 11:33:05] 2025-11-25 16:32:31,749 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 11:33:05] 2025-11-25 16:32:31,750 | INFO     | update_server=False
[2025-11-25 11:33:05] 2025-11-25 16:32:31,750 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 11:33:05] 2025-11-25 16:32:31,750 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 11:33:05] 2025-11-25 16:32:31,750 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 11:33:05] 2025-11-25 16:32:32,005 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 11:33:05] 2025-11-25 16:32:32,006 | INFO     | aborting loop
[2025-11-25 11:33:05] 2025-11-25 16:32:32,434 | INFO     | all data control threads have been joined
[2025-11-25 11:33:05] 2025-11-25 16:32:32,449 | INFO     | all job control threads have been joined
[2025-11-25 11:33:05] 2025-11-25 16:32:32,582 | INFO     | all payload control threads have been joined
[2025-11-25 11:33:05] 2025-11-25 16:32:32,715 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 11:33:05] 2025-11-25 16:32:32,755 | INFO     | [job] retrieve thread has finished
[2025-11-25 11:33:05] 2025-11-25 16:32:32,781 | INFO     | [job] queue monitor thread has finished
[2025-11-25 11:33:05] 2025-11-25 16:32:32,926 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 11:33:05] 2025-11-25 16:32:33,011 | INFO     | [job] job monitor thread has finished
[2025-11-25 11:33:05] 2025-11-25 16:32:33,036 | INFO     | [payload] failed_post thread has finished
[2025-11-25 11:33:05] 2025-11-25 16:32:33,139 | INFO     | [payload] validate_post thread has finished
[2025-11-25 11:33:05] 2025-11-25 16:32:33,191 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 11:33:05] 2025-11-25 16:32:33,200 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 11:33:05] 2025-11-25 16:32:33,440 | INFO     | [data] control thread has finished
[2025-11-25 11:33:05] 2025-11-25 16:32:33,455 | INFO     | [job] control thread has finished
[2025-11-25 11:33:05] 2025-11-25 16:32:33,464 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 11:33:05] 2025-11-25 16:32:33,624 | INFO     | [payload] control thread has finished
[2025-11-25 11:33:05] 2025-11-25 16:32:33,722 | INFO     | [data] copytool_in thread has finished
[2025-11-25 11:33:05] 2025-11-25 16:32:33,732 | INFO     | [job] validate thread has finished
[2025-11-25 11:33:05] 2025-11-25 16:32:33,758 | INFO     | [data] copytool_out thread has finished
[2025-11-25 11:33:05] 2025-11-25 16:32:36,724 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 11:33:05] 2025-11-25 16:32:43,319 | INFO     | [monitor] cgroup control has ended
[2025-11-25 11:33:05] 2025-11-25 16:32:44,054 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140066518705984)>', '<ExcThread(monitor, started 140065720231680)>']
[2025-11-25 11:33:05] 2025-11-25 16:32:49,080 | INFO     | all workflow threads have been joined
[2025-11-25 11:33:05] 2025-11-25 16:32:49,081 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 11:33:05] 2025-11-25 16:32:49,081 | INFO     | traces error code: 0
[2025-11-25 11:33:05] 2025-11-25 16:32:49,081 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 11:33:05] 2025-11-25 16:33:01,130 | INFO     | PID=1057477 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 11:33:05] 2025-11-25 16:33:01,130 | INFO     | .. there are 9 such processes running
[2025-11-25 11:33:05] 2025-11-25 16:33:01,131 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 11:33:05] 2025-11-25 16:33:01,131 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 11:33:05] 2025-11-25 16:33:01,131 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 11:33:05] 2025-11-25 16:33:01,131 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 11:33:05] 2025-11-25 16:33:01,132 | CRITICAL | thread 'MainThread' is not alive
[2025-11-25 11:33:05] 2025-11-25 16:33:01,132 | INFO     | [monitor] control thread has ended
[2025-11-25 11:33:05] 2025-11-25 16:33:01,659 [wrapper] ==== pilot stdout END ====
[2025-11-25 11:33:05] 2025-11-25 16:33:01,702 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 11:33:05] 2025-11-25 16:33:01,768 [wrapper] pilotpid: 1057477
[2025-11-25 11:33:05] 2025-11-25 16:33:01,813 [wrapper] Pilot exit status: 0
[2025-11-25 11:33:05] 2025-11-25 16:33:02,081 [wrapper] pandaids: 6895355685
[2025-11-25 11:33:05] 2025-11-25 16:33:02,864 [wrapper] cleanup supervisor_pilot  839962 1057478
[2025-11-25 11:33:05] 2025-11-25 16:33:02,921 [wrapper] Test setup, not cleaning
[2025-11-25 11:33:05] 2025-11-25 16:33:02,973 [wrapper] apfmon messages muted
[2025-11-25 11:33:05] 2025-11-25 16:33:03,016 [wrapper] ==== wrapper stdout END ====
[2025-11-25 11:33:05] 2025-11-25 16:33:03,068 [wrapper] ==== wrapper stderr END ====
[2025-11-25 11:33:05]  *** Error codes and diagnostics ***
[2025-11-25 11:33:05]     "exeErrorCode": 0,
[2025-11-25 11:33:05]     "exeErrorDiag": "",
[2025-11-25 11:33:05]     "pilotErrorCode": 0,
[2025-11-25 11:33:05]     "pilotErrorDiag": "",
[2025-11-25 11:33:05]  *** Listing of results directory ***
[2025-11-25 11:33:05] total 1334404
[2025-11-25 11:33:05] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 03:03 pilot3.tar.gz
[2025-11-25 11:33:05] -rwx------. 1 boincer umatlas     36292 Nov 23 03:17 runpilot2-wrapper.sh
[2025-11-25 11:33:05] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 03:17 queuedata.json
[2025-11-25 11:33:05] -rw-r--r--. 1 boincer umatlas       100 Nov 24 00:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 11:33:05] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 00:03 run_atlas
[2025-11-25 11:33:05] -rw-r--r--. 1 boincer umatlas       105 Nov 24 00:03 job.xml
[2025-11-25 11:33:05] -rw-r--r--. 2 boincer umatlas 410240486 Nov 24 00:04 EVNT.47483658._000669.pool.root.1
[2025-11-25 11:33:05] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 00:04 start_atlas.sh
[2025-11-25 11:33:05] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 00:04 shared
[2025-11-25 11:33:05] -rw-r--r--. 2 boincer umatlas    590096 Nov 24 00:04 input.tar.gz
[2025-11-25 11:33:05] -rw-r--r--. 1 boincer umatlas         0 Nov 24 00:04 boinc_lockfile
[2025-11-25 11:33:05] -rw-r--r--. 1 boincer umatlas      2785 Nov 24 00:04 pandaJob.out
[2025-11-25 11:33:05] -rw-------. 1 boincer umatlas        57 Nov 24 00:04 setup.sh.local
[2025-11-25 11:33:05] -rw-------. 1 boincer umatlas    989786 Nov 24 00:04 agis_schedconf.cvmfs.json
[2025-11-25 11:33:05] drwx------. 5 boincer umatlas      4096 Nov 24 00:04 pilot3
[2025-11-25 11:33:05] -rw-r--r--. 1 boincer umatlas       533 Nov 25 10:50 boinc_task_state.xml
[2025-11-25 11:33:05] -rw-------. 1 boincer umatlas 913977714 Nov 25 11:28 HITS.47556137._006648.pool.root.1
[2025-11-25 11:33:05] -rw-------. 1 boincer umatlas      1071 Nov 25 11:31 memory_monitor_summary.json
[2025-11-25 11:33:05] -rw-r--r--. 1 boincer umatlas      6662 Nov 25 11:31 init_data.xml
[2025-11-25 11:33:05] -rw-------. 1 boincer umatlas   1516240 Nov 25 11:31 agis_ddmendpoints.agis.ALL.json
[2025-11-25 11:33:05] -rw-------. 1 boincer umatlas   3348246 Nov 25 11:31 log.47556137._006648.job.log.tgz.1
[2025-11-25 11:33:05] -rw-------. 1 boincer umatlas      8665 Nov 25 11:32 heartbeat.json
[2025-11-25 11:33:05] -rw-------. 1 boincer umatlas        95 Nov 25 11:33 pilot_heartbeat.json
[2025-11-25 11:33:05] -rw-------. 1 boincer umatlas       892 Nov 25 11:33 pilotlog.txt
[2025-11-25 11:33:05] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 11:33 boinc_mmap_file
[2025-11-25 11:33:05] -rw-r--r--. 1 boincer umatlas        29 Nov 25 11:33 wrapper_checkpoint.txt
[2025-11-25 11:33:05] -rw-------. 1 boincer umatlas  15799612 Nov 25 11:33 log.47556137._006648.job.log.1
[2025-11-25 11:33:05] -rw-------. 1 boincer umatlas       353 Nov 25 11:33 output.list
[2025-11-25 11:33:05] -rw-r--r--. 1 boincer umatlas       620 Nov 25 11:33 runtime_log
[2025-11-25 11:33:05] -rw-------. 1 boincer umatlas  19169280 Nov 25 11:33 result.tar.gz
[2025-11-25 11:33:05] -rw-r--r--. 1 boincer umatlas      9346 Nov 25 11:33 runtime_log.err
[2025-11-25 11:33:05] -rw-------. 1 boincer umatlas       669 Nov 25 11:33 Hu9MDm6SKh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmPkKKDmXtiJ0m.diag
[2025-11-25 11:33:05] -rw-r--r--. 1 boincer umatlas     21762 Nov 25 11:33 stderr.txt
[2025-11-25 11:33:05] HITS file was successfully produced:
[2025-11-25 11:33:05] -rw-------. 1 boincer umatlas 913977714 Nov 25 11:28 shared/HITS.pool.root.1
[2025-11-25 11:33:05]  *** Contents of shared directory: ***
[2025-11-25 11:33:05] total 1312508
[2025-11-25 11:33:05] -rw-r--r--. 2 boincer umatlas 410240486 Nov 24 00:04 ATLAS.root_0
[2025-11-25 11:33:05] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 00:04 start_atlas.sh
[2025-11-25 11:33:05] -rw-r--r--. 2 boincer umatlas    590096 Nov 24 00:04 input.tar.gz
[2025-11-25 11:33:05] -rw-------. 1 boincer umatlas 913977714 Nov 25 11:28 HITS.pool.root.1
[2025-11-25 11:33:05] -rw-------. 1 boincer umatlas  19169280 Nov 25 11:33 result.tar.gz
11:33:06 (1053535): run_atlas exited; CPU time 316274.174415
11:33:06 (1053535): called boinc_finish(0)

</stderr_txt>
]]>

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