Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:02:41 (3699004): wrapper (7.7.26015): starting
00:02:41 (3699004): wrapper: running run_atlas (--nthreads 12)
[2025-11-24 00:02:41] Arguments: --nthreads 12
[2025-11-24 00:02:41] Threads: 12
[2025-11-24 00:02:41] Checking for CVMFS
[2025-11-24 00:02:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 00:02:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 00:02:41] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 00:02:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 00:02:41] 2.13.2.0 8544 31052 185592 153233 0 352 37881142 40960000 20198 16776704 0 62358429 99.791 33419673 38854 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-24 00:02:41] CVMFS is ok
[2025-11-24 00:02:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 00:02:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 00:02:41] Further information can be found at the LHC@home message board.
[2025-11-24 00:02:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 00:02:41] Checking for apptainer binary...
[2025-11-24 00:02:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 00:02:41] Running /usr/bin/apptainer --version
[2025-11-24 00:02:41] apptainer version 1.4.4-1.el9
[2025-11-24 00:02:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 00:02:42] c-212-10.aglt2.org
[2025-11-24 00:02:42] apptainer works
[2025-11-24 00:02:42] Set ATHENA_PROC_NUMBER=12
[2025-11-24 00:02:42] Set ATHENA_CORE_NUMBER=12
[2025-11-24 00:02:42] Starting ATLAS job with PandaID=6895338432
[2025-11-24 00:02:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 01:57:03]  *** The last 200 lines of the pilot log: ***
[2025-11-25 01:57:03] 2025-11-25 06:23:32,798 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 01:57:03] 2025-11-25 06:23:32,799 | INFO     | job 6895338432 has state=finished
[2025-11-25 01:57:03] 2025-11-25 06:23:32,799 | INFO     | preparing for final server update for job 6895338432 in state='finished'
[2025-11-25 01:57:03] 2025-11-25 06:23:32,799 | INFO     | this job has now completed (state=finished)
[2025-11-25 01:57:03] 2025-11-25 06:23:32,800 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-11-25 01:57:03] 2025-11-25 06:23:32,800 | INFO     | log transfer has been attempted: DONE
[2025-11-25 01:57:03] 2025-11-25 06:23:32,800 | INFO     | job 6895338432 has finished - writing final server update
[2025-11-25 01:57:03] 2025-11-25 06:23:32,800 | INFO     | total number of processed events: 1000 (read)
[2025-11-25 01:57:03] 2025-11-25 06:23:32,815 | INFO     | executing command: lscpu
[2025-11-25 01:57:03] 2025-11-25 06:23:32,953 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-25 01:57:03] 2025-11-25 06:23:34,324 | INFO     | time since job start (91231s) is within the limit (172800.0s)
[2025-11-25 01:57:03] 2025-11-25 06:23:34,659 | INFO     | monitor loop #5698: job 0:6895338432 is in state 'finished'
[2025-11-25 01:57:03] 2025-11-25 06:23:34,659 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 01:57:03] 2025-11-25 06:23:36,331 | INFO     | time since job start (91233s) is within the limit (172800.0s)
[2025-11-25 01:57:03] 2025-11-25 06:23:37,165 | INFO     | monitor loop #5699: job 0:6895338432 is in state 'finished'
[2025-11-25 01:57:03] 2025-11-25 06:23:37,167 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 01:57:03] 2025-11-25 06:23:38,338 | INFO     | time since job start (91235s) is within the limit (172800.0s)
[2025-11-25 01:57:03] 2025-11-25 06:23:38,368 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 01:57:03] 2025-11-25 06:23:38,374 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3091.5618854166664
[2025-11-25 01:57:03] 2025-11-25 06:23:38,407 | INFO     | using path: /tmp/boinchome/slots/7/PanDA_Pilot-6895338432/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 01:57:03] 2025-11-25 06:23:38,408 | INFO     | extracted standard info from prmon json
[2025-11-25 01:57:03] 2025-11-25 06:23:38,408 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 01:57:03] 2025-11-25 06:23:38,408 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 01:57:03] 2025-11-25 06:23:38,446 | INFO     | fitting pss+swap vs Time
[2025-11-25 01:57:03] 2025-11-25 06:23:38,452 | INFO     | sum of square deviations: 1033924029428.3615
[2025-11-25 01:57:03] 2025-11-25 06:23:38,847 | INFO     | sum of deviations: 3816074068493.9883
[2025-11-25 01:57:03] 2025-11-25 06:23:38,962 | INFO     | mean x: 1764006211.9196787
[2025-11-25 01:57:03] 2025-11-25 06:23:38,962 | INFO     | mean y: 3329922.0414993307
[2025-11-25 01:57:03] 2025-11-25 06:23:38,963 | INFO     | intersect: -6507378960.206618
[2025-11-25 01:57:03] 2025-11-25 06:23:38,964 | INFO     | chi2: 30.85336807376877
[2025-11-25 01:57:03] 2025-11-25 06:23:38,965 | INFO     | sum of square deviations: 1023578537797.1923
[2025-11-25 01:57:03] 2025-11-25 06:23:39,663 | INFO     | sum of deviations: 4434832467528.482
[2025-11-25 01:57:03] 2025-11-25 06:23:39,671 | INFO     | mean x: 1764006059.4311619
[2025-11-25 01:57:03] 2025-11-25 06:23:39,671 | INFO     | mean y: 3339041.355943586
[2025-11-25 01:57:03] 2025-11-25 06:23:39,671 | INFO     | intersect: -7639524751.116741
[2025-11-25 01:57:03] 2025-11-25 06:23:39,672 | INFO     | chi2: 26.970531823236442
[2025-11-25 01:57:03] 2025-11-25 06:23:39,673 | INFO     | current chi2=26.970531823236442 (change=12.584805137801075 %)
[2025-11-25 01:57:03] 2025-11-25 06:23:39,673 | INFO     | right removable region: 1488
[2025-11-25 01:57:03] 2025-11-25 06:23:39,674 | INFO     | sum of square deviations: 1023575421307.1934
[2025-11-25 01:57:03] 2025-11-25 06:23:39,723 | INFO     | sum of deviations: 3149302974070.633
[2025-11-25 01:57:03] 2025-11-25 06:23:39,723 | INFO     | mean x: 1764006364.4311619
[2025-11-25 01:57:03] 2025-11-25 06:23:39,723 | INFO     | mean y: 3339747.352585628
[2025-11-25 01:57:03] 2025-11-25 06:23:39,723 | INFO     | intersect: -5424096642.911528
[2025-11-25 01:57:03] 2025-11-25 06:23:39,724 | INFO     | chi2: 27.188988955044177
[2025-11-25 01:57:03] 2025-11-25 06:23:39,724 | INFO     | current chi2=27.188988955044177 (change=11.876755594278254 %)
[2025-11-25 01:57:03] 2025-11-25 06:23:39,724 | INFO     | left removable region: 10
[2025-11-25 01:57:03] 2025-11-25 06:23:39,725 | INFO     | sum of square deviations: 1001055861387.049
[2025-11-25 01:57:03] 2025-11-25 06:23:39,763 | INFO     | sum of deviations: 3446178020164.9355
[2025-11-25 01:57:03] 2025-11-25 06:23:39,763 | INFO     | mean x: 1764006333.9553452
[2025-11-25 01:57:03] 2025-11-25 06:23:39,763 | INFO     | mean y: 3357295.938430311
[2025-11-25 01:57:03] 2025-11-25 06:23:39,763 | INFO     | intersect: -6069310663.954986
[2025-11-25 01:57:03] 2025-11-25 06:23:39,764 | INFO     | chi2: 20.919895729691525
[2025-11-25 01:57:03] 2025-11-25 06:23:39,764 | INFO     | current memory leak: 3.44 B/s (using 1478 data points, chi2=20.92)
[2025-11-25 01:57:03] 2025-11-25 06:23:39,766 | INFO     | could have reported an average CPU frequency of 3075 MHz (53 samples)
[2025-11-25 01:57:03] 2025-11-25 06:23:39,766 | INFO     | ..............................
[2025-11-25 01:57:03] 2025-11-25 06:23:39,766 | INFO     | . Timing measurements:
[2025-11-25 01:57:03] 2025-11-25 06:23:39,766 | INFO     | . get job = 0 s
[2025-11-25 01:57:03] 2025-11-25 06:23:39,766 | INFO     | . initial setup = 2 s
[2025-11-25 01:57:03] 2025-11-25 06:23:39,766 | INFO     | . payload setup = 29 s
[2025-11-25 01:57:03] 2025-11-25 06:23:39,766 | INFO     | . stage-in = 0 s
[2025-11-25 01:57:03] 2025-11-25 06:23:39,766 | INFO     | . payload execution = 91141 s
[2025-11-25 01:57:03] 2025-11-25 06:23:39,766 | INFO     | . stage-out = 8 s
[2025-11-25 01:57:03] 2025-11-25 06:23:39,766 | INFO     | . log creation = 0 s
[2025-11-25 01:57:03] 2025-11-25 06:23:39,766 | INFO     | ..............................
[2025-11-25 01:57:03] 2025-11-25 06:23:39,897 | INFO     | 
[2025-11-25 01:57:03] 2025-11-25 06:23:39,898 | INFO     | job summary report
[2025-11-25 01:57:03] 2025-11-25 06:23:39,898 | INFO     | --------------------------------------------------
[2025-11-25 01:57:03] 2025-11-25 06:23:39,898 | INFO     | PanDA job id: 6895338432
[2025-11-25 01:57:03] 2025-11-25 06:23:39,898 | INFO     | task id: 47556137
[2025-11-25 01:57:03] 2025-11-25 06:23:39,898 | INFO     | errors: (none)
[2025-11-25 01:57:03] 2025-11-25 06:23:39,898 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 01:57:03] 2025-11-25 06:23:39,898 | INFO     | pilot state: finished 
[2025-11-25 01:57:03] 2025-11-25 06:23:39,898 | INFO     | transexitcode: 0
[2025-11-25 01:57:03] 2025-11-25 06:23:39,898 | INFO     | exeerrorcode: 0
[2025-11-25 01:57:03] 2025-11-25 06:23:39,898 | INFO     | exeerrordiag: 
[2025-11-25 01:57:03] 2025-11-25 06:23:39,898 | INFO     | exitcode: 0
[2025-11-25 01:57:03] 2025-11-25 06:23:39,898 | INFO     | exitmsg: OK
[2025-11-25 01:57:03] 2025-11-25 06:23:39,899 | INFO     | cpuconsumptiontime: 206948 s
[2025-11-25 01:57:03] 2025-11-25 06:23:39,899 | INFO     | nevents: 1000
[2025-11-25 01:57:03] 2025-11-25 06:23:39,899 | INFO     | neventsw: 0
[2025-11-25 01:57:03] 2025-11-25 06:23:39,899 | INFO     | pid: 3735492
[2025-11-25 01:57:03] 2025-11-25 06:23:39,899 | INFO     | pgrp: 3735492
[2025-11-25 01:57:03] 2025-11-25 06:23:39,899 | INFO     | corecount: 12
[2025-11-25 01:57:03] 2025-11-25 06:23:39,899 | INFO     | event service: False
[2025-11-25 01:57:03] 2025-11-25 06:23:39,899 | INFO     | sizes: {0: 2298585, 1: 2298784, 12: 2298784, 16: 2299074, 24: 2299102, 91173: 2367552, 91182: 2377337, 91184: 2377393, 91193: 2377735}
[2025-11-25 01:57:03] 2025-11-25 06:23:39,899 | INFO     | --------------------------------------------------
[2025-11-25 01:57:03] 2025-11-25 06:23:39,899 | INFO     | 
[2025-11-25 01:57:03] 2025-11-25 06:23:39,899 | INFO     | executing command: ls -lF /tmp/boinchome/slots/7
[2025-11-25 01:57:03] 2025-11-25 06:23:39,918 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 01:57:03] 2025-11-25 06:23:39,918 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 01:57:03] 2025-11-25 06:23:39,918 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 01:57:03] 2025-11-25 06:23:39,918 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 01:57:03] 2025-11-25 06:23:39,918 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 01:57:03] 2025-11-25 06:23:39,918 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 01:57:03] 2025-11-25 06:23:39,918 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 01:57:03] 2025-11-25 06:23:39,918 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 01:57:03] 2025-11-25 06:23:39,918 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 01:57:03] 2025-11-25 06:23:39,919 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 01:57:03] 2025-11-25 06:23:39,919 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 01:57:03] 2025-11-25 06:23:39,919 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 01:57:03] 2025-11-25 06:23:39,919 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 01:57:03] 2025-11-25 06:23:39,919 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 01:57:03] 2025-11-25 06:23:39,919 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 01:57:03] 2025-11-25 06:23:39,919 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 01:57:03] 2025-11-25 06:23:39,919 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 01:57:03] 2025-11-25 06:23:39,919 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 01:57:03] 2025-11-25 06:23:39,919 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 01:57:03] 2025-11-25 06:23:39,919 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 01:57:03] 2025-11-25 06:23:39,919 | INFO     | job 6895338432 has completed (purged errors)
[2025-11-25 01:57:03] 2025-11-25 06:23:39,919 | INFO     | overall cleanup function is called
[2025-11-25 01:57:03] 2025-11-25 06:23:40,943 | INFO     | --- collectZombieJob: --- 10, [3735492]
[2025-11-25 01:57:03] 2025-11-25 06:23:40,943 | INFO     | zombie collector waiting for pid 3735492
[2025-11-25 01:57:03] 2025-11-25 06:23:40,943 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 01:57:03] 2025-11-25 06:23:40,943 | INFO     | collected zombie processes
[2025-11-25 01:57:03] 2025-11-25 06:23:40,944 | INFO     | will attempt to kill all subprocesses of pid=3735492
[2025-11-25 01:57:03] 2025-11-25 06:23:41,755 | INFO     | process IDs to be killed: [3735492] (in reverse order)
[2025-11-25 01:57:03] 2025-11-25 06:23:41,906 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 01:57:03] 2025-11-25 06:23:41,919 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 01:57:03] 2025-11-25 06:23:41,935 | INFO     | did not find any defunct processes belonging to 3735492
[2025-11-25 01:57:03] 2025-11-25 06:23:41,950 | INFO     | did not find any defunct processes belonging to 3735492
[2025-11-25 01:57:03] 2025-11-25 06:23:41,951 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 01:57:03] 2025-11-25 06:23:41,951 | INFO     | ready for new job
[2025-11-25 01:57:03] 2025-11-25 06:23:41,951 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 01:57:03] 2025-11-25 06:23:41,955 | INFO     | ***************************************
[2025-11-25 01:57:03] 2025-11-25 06:23:41,955 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 01:57:03] 2025-11-25 06:23:41,955 | INFO     | ***************************************
[2025-11-25 01:57:03] 2025-11-25 06:23:41,955 | INFO     | 
[2025-11-25 01:57:03] 2025-11-25 06:23:41,959 | INFO     | architecture information:
[2025-11-25 01:57:03] 2025-11-25 06:23:41,960 | INFO     | executing command: cat /etc/os-release
[2025-11-25 01:57:03] 2025-11-25 06:23:41,994 | INFO     | cat /etc/os-release:
[2025-11-25 01:57:03] NAME="CentOS Linux"
[2025-11-25 01:57:03] VERSION="7 (Core)"
[2025-11-25 01:57:03] ID="centos"
[2025-11-25 01:57:03] ID_LIKE="rhel fedora"
[2025-11-25 01:57:03] VERSION_ID="7"
[2025-11-25 01:57:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 01:57:03] ANSI_COLOR="0;31"
[2025-11-25 01:57:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 01:57:03] HOME_URL="https://www.centos.org/"
[2025-11-25 01:57:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 01:57:03] 
[2025-11-25 01:57:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 01:57:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 01:57:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 01:57:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 01:57:03] 
[2025-11-25 01:57:03] 2025-11-25 06:23:41,994 | INFO     | ***************************************
[2025-11-25 01:57:03] 2025-11-25 06:23:42,498 | INFO     | executing command: df -mP /tmp/boinchome/slots/7
[2025-11-25 01:57:03] 2025-11-25 06:23:42,518 | INFO     | sufficient remaining disk space (120314658816 B)
[2025-11-25 01:57:03] 2025-11-25 06:23:42,519 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 01:57:03] 2025-11-25 06:23:42,519 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 01:57:03] 2025-11-25 06:23:42,519 | INFO     | update_server=False
[2025-11-25 01:57:03] 2025-11-25 06:23:42,519 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 01:57:03] 2025-11-25 06:23:42,520 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 01:57:03] 2025-11-25 06:23:42,531 | INFO     | all payload control threads have been joined
[2025-11-25 01:57:03] 2025-11-25 06:23:42,540 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 01:57:03] 2025-11-25 06:23:42,742 | INFO     | all data control threads have been joined
[2025-11-25 01:57:03] 2025-11-25 06:23:43,037 | INFO     | all job control threads have been joined
[2025-11-25 01:57:03] 2025-11-25 06:23:43,391 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 01:57:03] 2025-11-25 06:23:43,391 | INFO     | aborting loop
[2025-11-25 01:57:03] 2025-11-25 06:23:43,525 | INFO     | [job] retrieve thread has finished
[2025-11-25 01:57:03] 2025-11-25 06:23:43,537 | INFO     | [payload] control thread has finished
[2025-11-25 01:57:03] 2025-11-25 06:23:43,748 | INFO     | [data] control thread has finished
[2025-11-25 01:57:03] 2025-11-25 06:23:43,859 | INFO     | [job] validate thread has finished
[2025-11-25 01:57:03] 2025-11-25 06:23:43,956 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 01:57:03] 2025-11-25 06:23:44,063 | INFO     | [job] control thread has finished
[2025-11-25 01:57:03] 2025-11-25 06:23:44,397 | INFO     | [job] job monitor thread has finished
[2025-11-25 01:57:03] 2025-11-25 06:23:44,418 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 01:57:03] 2025-11-25 06:23:44,442 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 01:57:03] 2025-11-25 06:23:44,525 | INFO     | [data] copytool_out thread has finished
[2025-11-25 01:57:03] 2025-11-25 06:23:44,699 | INFO     | [payload] validate_post thread has finished
[2025-11-25 01:57:03] 2025-11-25 06:23:44,911 | INFO     | [payload] failed_post thread has finished
[2025-11-25 01:57:03] 2025-11-25 06:23:44,930 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 01:57:03] 2025-11-25 06:23:45,068 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 01:57:03] 2025-11-25 06:23:45,069 | INFO     | [data] copytool_in thread has finished
[2025-11-25 01:57:03] 2025-11-25 06:23:45,936 | INFO     | [job] queue monitor thread has finished
[2025-11-25 01:57:03] 2025-11-25 06:23:46,562 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 01:57:03] 2025-11-25 06:24:12,120 | INFO     | PID=3709632 has CPU usage=4.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 01:57:03] 2025-11-25 06:24:12,120 | INFO     | .. there are 20 such processes running
[2025-11-25 01:57:03] 2025-11-25 06:24:12,121 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 01:57:03] 2025-11-25 06:24:12,121 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 01:57:03] 2025-11-25 06:24:12,121 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 01:57:03] 2025-11-25 06:24:42,604 | INFO     | [monitor] cgroup control has ended
[2025-11-25 01:57:03] 2025-11-25 06:24:43,352 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140622781003584)>', '<ExcThread(monitor, started 140622430189312)>']
[2025-11-25 01:57:03] 2025-11-25 06:24:44,320 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 01:57:03] 2025-11-25 06:24:44,320 | INFO     | [monitor] control thread has ended
[2025-11-25 01:57:03] 2025-11-25 06:24:48,379 | INFO     | all workflow threads have been joined
[2025-11-25 01:57:03] 2025-11-25 06:24:48,379 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 01:57:03] 2025-11-25 06:24:48,379 | INFO     | traces error code: 0
[2025-11-25 01:57:03] 2025-11-25 06:24:48,380 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 01:57:03] 2025-11-25 06:24:49,882 [wrapper] ==== pilot stdout END ====
[2025-11-25 01:57:03] 2025-11-25 06:24:49,902 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 01:57:03] 2025-11-25 06:24:49,922 [wrapper] pilotpid: 3709632
[2025-11-25 01:57:03] 2025-11-25 06:24:49,978 [wrapper] Pilot exit status: 0
[2025-11-25 01:57:03] 2025-11-25 06:24:50,033 [wrapper] pandaids: 6895338432
[2025-11-25 01:57:03] 2025-11-25 06:24:50,126 [wrapper] cleanup supervisor_pilot 2982784 3709633
[2025-11-25 01:57:03] 2025-11-25 06:24:50,139 [wrapper] Test setup, not cleaning
[2025-11-25 01:57:03] 2025-11-25 06:24:50,148 [wrapper] apfmon messages muted
[2025-11-25 01:57:03] 2025-11-25 06:24:50,161 [wrapper] ==== wrapper stdout END ====
[2025-11-25 01:57:03] 2025-11-25 06:24:50,163 [wrapper] ==== wrapper stderr END ====
[2025-11-25 01:57:03]  *** Error codes and diagnostics ***
[2025-11-25 01:57:03]     "exeErrorCode": 0,
[2025-11-25 01:57:03]     "exeErrorDiag": "",
[2025-11-25 01:57:03]     "pilotErrorCode": 0,
[2025-11-25 01:57:03]     "pilotErrorDiag": "",
[2025-11-25 01:57:03]  *** Listing of results directory ***
[2025-11-25 01:57:03] total 1333376
[2025-11-25 01:57:03] -rw-r--r--. 1 boincer umatlas    576529 Nov 22 03:43 pilot3.tar.gz
[2025-11-25 01:57:03] -rwx------. 1 boincer umatlas     36292 Nov 22 03:54 runpilot2-wrapper.sh
[2025-11-25 01:57:03] -rw-r--r--. 1 boincer umatlas      5112 Nov 22 03:54 queuedata.json
[2025-11-25 01:57:03] -rw-r--r--. 1 boincer umatlas       100 Nov 24 00:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 01:57:03] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 00:02 run_atlas
[2025-11-25 01:57:03] -rw-r--r--. 1 boincer umatlas       105 Nov 24 00:02 job.xml
[2025-11-25 01:57:03] -rw-r--r--. 2 boincer umatlas 411805001 Nov 24 00:02 EVNT.47483658._000324.pool.root.1
[2025-11-25 01:57:03] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 00:02 start_atlas.sh
[2025-11-25 01:57:03] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 00:02 shared
[2025-11-25 01:57:03] -rw-r--r--. 2 boincer umatlas    590102 Nov 24 00:02 input.tar.gz
[2025-11-25 01:57:03] -rw-r--r--. 1 boincer umatlas         0 Nov 24 00:02 boinc_lockfile
[2025-11-25 01:57:03] -rw-r--r--. 1 boincer umatlas      2785 Nov 24 00:02 pandaJob.out
[2025-11-25 01:57:03] -rw-------. 1 boincer umatlas        57 Nov 24 00:02 setup.sh.local
[2025-11-25 01:57:03] -rw-------. 1 boincer umatlas    989786 Nov 24 00:03 agis_schedconf.cvmfs.json
[2025-11-25 01:57:03] drwx------. 5 boincer umatlas      4096 Nov 24 00:03 pilot3
[2025-11-25 01:57:03] -rw-r--r--. 1 boincer umatlas       533 Nov 25 00:39 boinc_task_state.xml
[2025-11-25 01:57:03] -rw-------. 1 boincer umatlas 920078853 Nov 25 01:22 HITS.47556137._003207.pool.root.1
[2025-11-25 01:57:03] -rw-------. 1 boincer umatlas      1072 Nov 25 01:23 memory_monitor_summary.json
[2025-11-25 01:57:03] -rw-------. 1 boincer umatlas   1516227 Nov 25 01:23 agis_ddmendpoints.agis.ALL.json
[2025-11-25 01:57:03] -rw-------. 1 boincer umatlas   2956742 Nov 25 01:23 log.47556137._003207.job.log.tgz.1
[2025-11-25 01:57:03] -rw-------. 1 boincer umatlas      8645 Nov 25 01:23 heartbeat.json
[2025-11-25 01:57:03] -rw-------. 1 boincer umatlas        95 Nov 25 01:24 pilot_heartbeat.json
[2025-11-25 01:57:03] -rw-------. 1 boincer umatlas      4825 Nov 25 01:24 pilotlog.txt
[2025-11-25 01:57:03] -rw-------. 1 boincer umatlas  11834790 Nov 25 01:24 log.47556137._003207.job.log.1
[2025-11-25 01:57:03] -rw-------. 1 boincer umatlas       353 Nov 25 01:24 output.list
[2025-11-25 01:57:03] -rw-r--r--. 1 boincer umatlas       620 Nov 25 01:24 runtime_log
[2025-11-25 01:57:03] -rw-------. 1 boincer umatlas  14807040 Nov 25 01:24 result.tar.gz
[2025-11-25 01:57:03] -rw-r--r--. 1 boincer umatlas      9345 Nov 25 01:24 runtime_log.err
[2025-11-25 01:57:03] -rw-------. 1 boincer umatlas       668 Nov 25 01:24 CHoMDmIZyg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDms2HKDmYc9Kin.diag
[2025-11-25 01:57:03] -rw-r--r--. 1 boincer umatlas      6950 Nov 25 01:57 init_data.xml
[2025-11-25 01:57:03] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 01:57 boinc_mmap_file
[2025-11-25 01:57:03] -rw-r--r--. 1 boincer umatlas        29 Nov 25 01:57 wrapper_checkpoint.txt
[2025-11-25 01:57:03] -rw-r--r--. 1 boincer umatlas     21853 Nov 25 01:57 stderr.txt
[2025-11-25 01:57:03] HITS file was successfully produced:
[2025-11-25 01:57:03] -rw-------. 1 boincer umatlas 920078853 Nov 25 01:22 shared/HITS.pool.root.1
[2025-11-25 01:57:03]  *** Contents of shared directory: ***
[2025-11-25 01:57:03] total 1315732
[2025-11-25 01:57:03] -rw-r--r--. 2 boincer umatlas 411805001 Nov 24 00:02 ATLAS.root_0
[2025-11-25 01:57:03] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 00:02 start_atlas.sh
[2025-11-25 01:57:03] -rw-r--r--. 2 boincer umatlas    590102 Nov 24 00:02 input.tar.gz
[2025-11-25 01:57:03] -rw-------. 1 boincer umatlas 920078853 Nov 25 01:22 HITS.pool.root.1
[2025-11-25 01:57:03] -rw-------. 1 boincer umatlas  14807040 Nov 25 01:24 result.tar.gz
01:57:05 (3699004): run_atlas exited; CPU time 207634.081922
01:57:05 (3699004): called boinc_finish(0)

</stderr_txt>
]]>

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