Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
19:01:26 (1673749): wrapper (7.7.26015): starting
19:01:26 (1673749): wrapper: running run_atlas (--nthreads 3)
[2025-11-26 19:01:26] Arguments: --nthreads 3
[2025-11-26 19:01:26] Threads: 3
[2025-11-26 19:01:26] Checking for CVMFS
[2025-11-26 19:01:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 19:01:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 19:01:26] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 19:01:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 19:01:26] 2.9.2.0 52203 12174 100092 153330 3 81 28055939 36864001 0 130560 0 4522418 99.940 596364 3545 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-26 19:01:26] CVMFS is ok
[2025-11-26 19:01:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 19:01:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 19:01:26] Further information can be found at the LHC@home message board.
[2025-11-26 19:01:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 19:01:26] Checking for apptainer binary...
[2025-11-26 19:01:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 19:01:26] Running /usr/bin/apptainer --version
[2025-11-26 19:01:26] apptainer version 1.4.1-1.1
[2025-11-26 19:01:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 19:01:27] thA371b
[2025-11-26 19:01:27] apptainer works
[2025-11-26 19:01:27] Set ATHENA_PROC_NUMBER=3
[2025-11-26 19:01:27] Set ATHENA_CORE_NUMBER=3
[2025-11-26 19:01:27] Starting ATLAS job with PandaID=6895355674
[2025-11-26 19:01:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 02:58:11]  *** The last 200 lines of the pilot log: ***
[2025-11-27 02:58:11] 2025-11-27 01:57:15,836 | INFO     | zombie collector waiting for pid 1683915
[2025-11-27 02:58:11] 2025-11-27 01:57:15,836 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 02:58:11] 2025-11-27 01:57:15,836 | INFO     | collected zombie processes
[2025-11-27 02:58:11] 2025-11-27 01:57:15,836 | INFO     | will attempt to kill all subprocesses of pid=1683915
[2025-11-27 02:58:11] 2025-11-27 01:57:15,877 | INFO     | process IDs to be killed: [1683915] (in reverse order)
[2025-11-27 02:58:11] 2025-11-27 01:57:15,901 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 02:58:11] 2025-11-27 01:57:15,901 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 02:58:11] 2025-11-27 01:57:15,902 | INFO     | did not find any defunct processes belonging to 1683915
[2025-11-27 02:58:11] 2025-11-27 01:57:15,903 | INFO     | did not find any defunct processes belonging to 1683915
[2025-11-27 02:58:11] 2025-11-27 01:57:15,904 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 02:58:11] 2025-11-27 01:57:15,904 | INFO     | ready for new job
[2025-11-27 02:58:11] 2025-11-27 01:57:15,904 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 02:58:11] 2025-11-27 01:57:15,905 | INFO     | ***************************************
[2025-11-27 02:58:11] 2025-11-27 01:57:15,905 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 02:58:11] 2025-11-27 01:57:15,905 | INFO     | ***************************************
[2025-11-27 02:58:11] 2025-11-27 01:57:15,905 | INFO     | 
[2025-11-27 02:58:11] 2025-11-27 01:57:15,905 | INFO     | architecture information:
[2025-11-27 02:58:11] 2025-11-27 01:57:15,906 | INFO     | executing command: cat /etc/os-release
[2025-11-27 02:58:11] 2025-11-27 01:57:15,914 | INFO     | cat /etc/os-release:
[2025-11-27 02:58:11] NAME="CentOS Linux"
[2025-11-27 02:58:11] VERSION="7 (Core)"
[2025-11-27 02:58:11] ID="centos"
[2025-11-27 02:58:11] ID_LIKE="rhel fedora"
[2025-11-27 02:58:11] VERSION_ID="7"
[2025-11-27 02:58:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 02:58:11] ANSI_COLOR="0;31"
[2025-11-27 02:58:11] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 02:58:11] HOME_URL="https://www.centos.org/"
[2025-11-27 02:58:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 02:58:11] 
[2025-11-27 02:58:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 02:58:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 02:58:11] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 02:58:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 02:58:11] 
[2025-11-27 02:58:11] 2025-11-27 01:57:15,914 | INFO     | ***************************************
[2025-11-27 02:58:11] 2025-11-27 01:57:16,418 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-27 02:58:11] 2025-11-27 01:57:16,431 | INFO     | sufficient remaining disk space (228898897920 B)
[2025-11-27 02:58:11] 2025-11-27 01:57:16,431 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 02:58:11] 2025-11-27 01:57:16,431 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 02:58:11] 2025-11-27 01:57:16,431 | INFO     | update_server=False
[2025-11-27 02:58:11] 2025-11-27 01:57:16,431 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 02:58:11] 2025-11-27 01:57:16,431 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 02:58:11] 2025-11-27 01:57:16,431 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 02:58:11] 2025-11-27 01:57:16,431 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 02:58:11] 2025-11-27 01:57:16,658 | INFO     | all job control threads have been joined
[2025-11-27 02:58:11] 2025-11-27 01:57:16,926 | INFO     | all data control threads have been joined
[2025-11-27 02:58:11] 2025-11-27 01:57:17,130 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 02:58:11] 2025-11-27 01:57:17,130 | INFO     | aborting loop
[2025-11-27 02:58:11] 2025-11-27 01:57:17,431 | INFO     | all payload control threads have been joined
[2025-11-27 02:58:11] 2025-11-27 01:57:17,437 | INFO     | [job] retrieve thread has finished
[2025-11-27 02:58:11] 2025-11-27 01:57:17,437 | INFO     | [job] queue monitor thread has finished
[2025-11-27 02:58:11] 2025-11-27 01:57:17,521 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 02:58:11] 2025-11-27 01:57:17,571 | INFO     | [data] copytool_in thread has finished
[2025-11-27 02:58:11] 2025-11-27 01:57:17,618 | INFO     | [payload] failed_post thread has finished
[2025-11-27 02:58:11] 2025-11-27 01:57:17,664 | INFO     | [job] control thread has finished
[2025-11-27 02:58:11] 2025-11-27 01:57:17,670 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 02:58:11] 2025-11-27 01:57:17,931 | INFO     | [data] control thread has finished
[2025-11-27 02:58:11] 2025-11-27 01:57:18,055 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 02:58:11] 2025-11-27 01:57:18,055 | INFO     | [job] validate thread has finished
[2025-11-27 02:58:11] 2025-11-27 01:57:18,120 | INFO     | [payload] validate_post thread has finished
[2025-11-27 02:58:11] 2025-11-27 01:57:18,136 | INFO     | [job] job monitor thread has finished
[2025-11-27 02:58:11] 2025-11-27 01:57:18,175 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 02:58:11] 2025-11-27 01:57:18,437 | INFO     | [payload] control thread has finished
[2025-11-27 02:58:11] 2025-11-27 01:57:18,437 | INFO     | [data] copytool_out thread has finished
[2025-11-27 02:58:11] 2025-11-27 01:57:20,438 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 02:58:11] 2025-11-27 01:57:47,217 | INFO     | PID=1677473 has CPU usage=0.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 02:58:11] 2025-11-27 01:57:47,217 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 02:58:11] 2025-11-27 01:57:47,217 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 02:58:11] 2025-11-27 01:57:47,217 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 02:58:11] 2025-11-27 01:58:05,005 | INFO     | [monitor] cgroup control has ended
[2025-11-27 02:58:11] 2025-11-27 01:58:06,011 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140418852894528)>', '<ExcThread(monitor, started 140418368919296)>']
[2025-11-27 02:58:11] 2025-11-27 01:58:06,317 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 02:58:11] 2025-11-27 01:58:06,318 | INFO     | [monitor] control thread has ended
[2025-11-27 02:58:11] 2025-11-27 01:58:11,022 | INFO     | all workflow threads have been joined
[2025-11-27 02:58:11] 2025-11-27 01:58:11,022 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 02:58:11] 2025-11-27 01:58:11,023 | INFO     | traces error code: 0
[2025-11-27 02:58:11] 2025-11-27 01:58:11,023 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 02:58:11] 2025-11-27 01:58:11,071 [wrapper] ==== pilot stdout END ====
[2025-11-27 02:58:11] 2025-11-27 01:58:11,073 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 02:58:11] 2025-11-27 01:58:11,076 [wrapper] pilotpid: 1677473
[2025-11-27 02:58:11] 2025-11-27 01:58:11,078 [wrapper] Pilot exit status: 0
[2025-11-27 02:58:11] 2025-11-27 01:58:11,086 [wrapper] pandaids: 6895355674
[2025-11-27 02:58:11] 2025-11-27 01:58:11,102 [wrapper] cleanup supervisor_pilot 1734447 1677474
[2025-11-27 02:58:11] 2025-11-27 01:58:11,104 [wrapper] Test setup, not cleaning
[2025-11-27 02:58:11] 2025-11-27 01:58:11,107 [wrapper] apfmon messages muted
[2025-11-27 02:58:11] 2025-11-27 01:58:11,109 [wrapper] ==== wrapper stdout END ====
[2025-11-27 02:58:11] 2025-11-27 01:58:11,111 [wrapper] ==== wrapper stderr END ====
[2025-11-27 02:58:11]  *** Error codes and diagnostics ***
[2025-11-27 02:58:11]     "exeErrorCode": 0,
[2025-11-27 02:58:11]     "exeErrorDiag": "",
[2025-11-27 02:58:11]     "pilotErrorCode": 0,
[2025-11-27 02:58:11]     "pilotErrorDiag": "",
[2025-11-27 02:58:11]  *** Listing of results directory ***
[2025-11-27 02:58:11] total 1306896
[2025-11-27 02:58:11] -rw-r--r-- 1 boinc boinc    576529 Nov 23 09:03 pilot3.tar.gz
[2025-11-27 02:58:11] -rw-r--r-- 1 boinc boinc      5112 Nov 23 09:07 queuedata.json
[2025-11-27 02:58:11] -rwx------ 1 boinc boinc     36292 Nov 23 09:09 runpilot2-wrapper.sh
[2025-11-27 02:58:11] -rw-r--r-- 1 boinc boinc       100 Nov 26 19:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 02:58:11] -rwxr-xr-x 1 boinc boinc      7986 Nov 26 19:01 run_atlas
[2025-11-27 02:58:11] -rw-r--r-- 1 boinc boinc       105 Nov 26 19:01 job.xml
[2025-11-27 02:58:11] -rw-r--r-- 2 boinc boinc 409879404 Nov 26 19:01 EVNT.47483658._000668.pool.root.1
[2025-11-27 02:58:11] -rw-r--r-- 2 boinc boinc    590099 Nov 26 19:01 input.tar.gz
[2025-11-27 02:58:11] -rw-r--r-- 2 boinc boinc     15847 Nov 26 19:01 start_atlas.sh
[2025-11-27 02:58:11] drwxrwx--x 2 boinc boinc      4096 Nov 26 19:01 shared
[2025-11-27 02:58:11] -rw-r--r-- 1 boinc boinc         0 Nov 26 19:01 boinc_setup_complete
[2025-11-27 02:58:11] -rw-r--r-- 1 boinc boinc      6441 Nov 26 19:01 init_data.xml
[2025-11-27 02:58:11] -rw-r--r-- 1 boinc boinc         0 Nov 26 19:01 boinc_lockfile
[2025-11-27 02:58:11] -rw-r--r-- 1 boinc boinc      2785 Nov 26 19:01 pandaJob.out
[2025-11-27 02:58:11] -rw------- 1 boinc boinc    991530 Nov 26 19:01 agis_schedconf.cvmfs.json
[2025-11-27 02:58:11] drwx------ 5 boinc boinc      4096 Nov 26 19:01 pilot3
[2025-11-27 02:58:11] -rw-r--r-- 1 boinc boinc       531 Nov 27 02:53 boinc_task_state.xml
[2025-11-27 02:58:11] -rw------- 1 boinc boinc 914104453 Nov 27 02:56 HITS.47556137._006637.pool.root.1
[2025-11-27 02:58:11] -rw------- 1 boinc boinc        95 Nov 27 02:56 pilot_heartbeat.json
[2025-11-27 02:58:11] -rw------- 1 boinc boinc      1024 Nov 27 02:57 memory_monitor_summary.json
[2025-11-27 02:58:11] -rw------- 1 boinc boinc   1516240 Nov 27 02:57 agis_ddmendpoints.agis.ALL.json
[2025-11-27 02:58:11] -rw------- 1 boinc boinc   1162805 Nov 27 02:57 log.47556137._006637.job.log.tgz.1
[2025-11-27 02:58:11] -rw------- 1 boinc boinc      8570 Nov 27 02:57 heartbeat.json
[2025-11-27 02:58:11] -rw-r--r-- 1 boinc boinc      8192 Nov 27 02:58 boinc_mmap_file
[2025-11-27 02:58:11] -rw-r--r-- 1 boinc boinc        28 Nov 27 02:58 wrapper_checkpoint.txt
[2025-11-27 02:58:11] -rw------- 1 boinc boinc      4752 Nov 27 02:58 pilotlog.txt
[2025-11-27 02:58:11] -rw------- 1 boinc boinc   4022750 Nov 27 02:58 log.47556137._006637.job.log.1
[2025-11-27 02:58:11] -rw------- 1 boinc boinc       353 Nov 27 02:58 output.list
[2025-11-27 02:58:11] -rw-r--r-- 1 boinc boinc       620 Nov 27 02:58 runtime_log
[2025-11-27 02:58:11] -rw------- 1 boinc boinc   5201920 Nov 27 02:58 result.tar.gz
[2025-11-27 02:58:11] -rw-r--r-- 1 boinc boinc      8903 Nov 27 02:58 runtime_log.err
[2025-11-27 02:58:11] -rw------- 1 boinc boinc       666 Nov 27 02:58 dHbNDm6KKh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmDkKKDmyoFM0m.diag
[2025-11-27 02:58:11] -rw-r--r-- 1 boinc boinc     10739 Nov 27 02:58 stderr.txt
[2025-11-27 02:58:11] HITS file was successfully produced:
[2025-11-27 02:58:11] -rw------- 1 boinc boinc 914104453 Nov 27 02:56 shared/HITS.pool.root.1
[2025-11-27 02:58:11]  *** Contents of shared directory: ***
[2025-11-27 02:58:11] total 1298644
[2025-11-27 02:58:11] -rw-r--r-- 2 boinc boinc 409879404 Nov 26 19:01 ATLAS.root_0
[2025-11-27 02:58:11] -rw-r--r-- 2 boinc boinc    590099 Nov 26 19:01 input.tar.gz
[2025-11-27 02:58:11] -rw-r--r-- 2 boinc boinc     15847 Nov 26 19:01 start_atlas.sh
[2025-11-27 02:58:11] -rw------- 1 boinc boinc 914104453 Nov 27 02:56 HITS.pool.root.1
[2025-11-27 02:58:11] -rw------- 1 boinc boinc   5201920 Nov 27 02:58 result.tar.gz
02:58:12 (1673749): run_atlas exited; CPU time 84201.334329
02:58:12 (1673749): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN