Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
23:08:33 (22008): wrapper (7.7.26015): starting
23:08:33 (22008): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 23:08:33] Arguments: --nthreads 8
[2025-11-23 23:08:33] Threads: 8
[2025-11-23 23:08:33] Checking for CVMFS
[2025-11-23 23:08:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 23:08:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 23:08:34] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 23:08:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 23:08:34] 2.11.2.0 8539 114335 148840 153231 1 90 13982355 18432001 1885 130560 0 85838215 99.974 4756109 31528 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-23 23:08:34] CVMFS is ok
[2025-11-23 23:08:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 23:08:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 23:08:34] Further information can be found at the LHC@home message board.
[2025-11-23 23:08:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 23:08:34] Checking for apptainer binary...
[2025-11-23 23:08:34] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 23:08:34] Running /usr/bin/apptainer --version
[2025-11-23 23:08:34] apptainer version 1.3.2-1.el7
[2025-11-23 23:08:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 23:08:35] c-206-1.aglt2.org
[2025-11-23 23:08:35] apptainer works
[2025-11-23 23:08:35] Set ATHENA_PROC_NUMBER=8
[2025-11-23 23:08:35] Set ATHENA_CORE_NUMBER=8
[2025-11-23 23:08:35] Starting ATLAS job with PandaID=6895350345
[2025-11-23 23:08:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
02:11:42 (20392): wrapper (7.7.26015): starting
02:11:42 (20392): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 02:11:42] Arguments: --nthreads 8
[2025-11-24 02:11:42] Threads: 8
[2025-11-24 02:11:42] This job has been restarted, cleaning up previous attempt
[2025-11-24 02:11:42] Checking for CVMFS
[2025-11-24 02:11:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 02:11:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 02:11:43] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 02:11:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 02:11:43] 2.11.2.0 8539 114518 145280 153236 2 56 14009492 18432000 1 130560 0 86103739 99.974 4764030 31526 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-24 02:11:43] CVMFS is ok
[2025-11-24 02:11:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 02:11:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 02:11:43] Further information can be found at the LHC@home message board.
[2025-11-24 02:11:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 02:11:43] Checking for apptainer binary...
[2025-11-24 02:11:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 02:11:43] Running /usr/bin/apptainer --version
[2025-11-24 02:11:43] apptainer version 1.3.2-1.el7
[2025-11-24 02:11:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 02:11:44] c-206-1.aglt2.org
[2025-11-24 02:11:44] apptainer works
[2025-11-24 02:11:44] Set ATHENA_PROC_NUMBER=8
[2025-11-24 02:11:44] Set ATHENA_CORE_NUMBER=8
[2025-11-24 02:11:44] Starting ATLAS job with PandaID=6895350345
[2025-11-24 02:11:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 21:15:09]  *** The last 200 lines of the pilot log: ***
[2025-11-24 21:15:09] 2025-11-25 02:14:36,259 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 21:15:09] 2025-11-25 02:14:36,507 | INFO     | time since job start (68559s) is within the limit (172800.0s)
[2025-11-24 21:15:09] 2025-11-25 02:14:37,753 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-24 21:15:09] 2025-11-25 02:14:37,758 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2056.375
[2025-11-24 21:15:09] 2025-11-25 02:14:37,761 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895350345/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 21:15:09] 2025-11-25 02:14:37,761 | INFO     | extracted standard info from prmon json
[2025-11-24 21:15:09] 2025-11-25 02:14:37,761 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 21:15:09] 2025-11-25 02:14:37,762 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 21:15:09] 2025-11-25 02:14:37,779 | INFO     | fitting pss+swap vs Time
[2025-11-24 21:15:09] 2025-11-25 02:14:37,780 | INFO     | sum of square deviations: 440329357586.0526
[2025-11-24 21:15:09] 2025-11-25 02:14:37,804 | INFO     | sum of deviations: 2239332538482.993
[2025-11-24 21:15:09] 2025-11-25 02:14:37,804 | INFO     | mean x: 1764002595.274911
[2025-11-24 21:15:09] 2025-11-25 02:14:37,804 | INFO     | mean y: 3037062.857651246
[2025-11-24 21:15:09] 2025-11-25 02:14:37,805 | INFO     | intersect: -8967948726.559258
[2025-11-24 21:15:09] 2025-11-25 02:14:37,806 | INFO     | chi2: 5.0066679448979805
[2025-11-24 21:15:09] 2025-11-25 02:14:37,807 | INFO     | sum of square deviations: 434479448433.03644
[2025-11-24 21:15:09] 2025-11-25 02:14:37,831 | INFO     | sum of deviations: 2570141469177.6704
[2025-11-24 21:15:09] 2025-11-25 02:14:37,831 | INFO     | mean x: 1764002442.7783735
[2025-11-24 21:15:09] 2025-11-25 02:14:37,831 | INFO     | mean y: 3045679.1599642537
[2025-11-24 21:15:09] 2025-11-25 02:14:37,831 | INFO     | intersect: -10431822635.708477
[2025-11-24 21:15:09] 2025-11-25 02:14:37,832 | INFO     | chi2: 2.6078699441062794
[2025-11-24 21:15:09] 2025-11-25 02:14:37,832 | INFO     | current chi2=2.6078699441062794 (change=47.91206501394174 %)
[2025-11-24 21:15:09] 2025-11-25 02:14:37,833 | INFO     | sum of square deviations: 428681586767.4943
[2025-11-24 21:15:09] 2025-11-25 02:14:37,857 | INFO     | sum of deviations: 2657740385628.428
[2025-11-24 21:15:09] 2025-11-25 02:14:37,857 | INFO     | mean x: 1764002290.281867
[2025-11-24 21:15:09] 2025-11-25 02:14:37,858 | INFO     | mean y: 3047981.6005386
[2025-11-24 21:15:09] 2025-11-25 02:14:37,858 | INFO     | intersect: -10933414586.281925
[2025-11-24 21:15:09] 2025-11-25 02:14:37,859 | INFO     | chi2: 2.354547946805108
[2025-11-24 21:15:09] 2025-11-25 02:14:37,859 | INFO     | current chi2=2.354547946805108 (change=9.713751173584132 %)
[2025-11-24 21:15:09] 2025-11-25 02:14:37,859 | INFO     | right removable region: 1113
[2025-11-24 21:15:09] 2025-11-25 02:14:37,860 | INFO     | sum of square deviations: 434478985443.59235
[2025-11-24 21:15:09] 2025-11-25 02:14:37,885 | INFO     | sum of deviations: 1944098921870.9746
[2025-11-24 21:15:09] 2025-11-25 02:14:37,885 | INFO     | mean x: 1764002747.77748
[2025-11-24 21:15:09] 2025-11-25 02:14:37,885 | INFO     | mean y: 3044748.252904379
[2025-11-24 21:15:09] 2025-11-25 02:14:37,885 | INFO     | intersect: -7890077715.726123
[2025-11-24 21:15:09] 2025-11-25 02:14:37,886 | INFO     | chi2: 2.9937613340630658
[2025-11-24 21:15:09] 2025-11-25 02:14:37,886 | INFO     | current chi2=2.9937613340630658 (change=40.204515917340935 %)
[2025-11-24 21:15:09] 2025-11-25 02:14:37,887 | INFO     | sum of square deviations: 428680660910.6178
[2025-11-24 21:15:09] 2025-11-25 02:14:37,911 | INFO     | sum of deviations: 1852711421912.4443
[2025-11-24 21:15:09] 2025-11-25 02:14:37,911 | INFO     | mean x: 1764002900.2800717
[2025-11-24 21:15:09] 2025-11-25 02:14:37,911 | INFO     | mean y: 3047151.3895870736
[2025-11-24 21:15:09] 2025-11-25 02:14:37,911 | INFO     | intersect: -7620782472.025596
[2025-11-24 21:15:09] 2025-11-25 02:14:37,912 | INFO     | chi2: 2.9103314202286805
[2025-11-24 21:15:09] 2025-11-25 02:14:37,913 | INFO     | current chi2=2.9103314202286805 (change=2.786792416787481 %)
[2025-11-24 21:15:09] 2025-11-25 02:14:37,913 | INFO     | left removable region: 20
[2025-11-24 21:15:09] 2025-11-25 02:14:37,914 | INFO     | sum of square deviations: 404892296097.32935
[2025-11-24 21:15:09] 2025-11-25 02:14:37,937 | INFO     | sum of deviations: 2140617387699.066
[2025-11-24 21:15:09] 2025-11-25 02:14:37,937 | INFO     | mean x: 1764002869.7868252
[2025-11-24 21:15:09] 2025-11-25 02:14:37,937 | INFO     | mean y: 3061573.240622141
[2025-11-24 21:15:09] 2025-11-25 02:14:37,937 | INFO     | intersect: -9323011684.792
[2025-11-24 21:15:09] 2025-11-25 02:14:37,938 | INFO     | chi2: 0.20298066774253345
[2025-11-24 21:15:09] 2025-11-25 02:14:37,938 | INFO     | current memory leak: 5.29 B/s (using 1093 data points, chi2=0.20)
[2025-11-24 21:15:09] 2025-11-25 02:14:37,939 | INFO     | could have reported an average CPU frequency of 2570 MHz (41 samples)
[2025-11-24 21:15:09] 2025-11-25 02:14:37,939 | INFO     | ..............................
[2025-11-24 21:15:09] 2025-11-25 02:14:37,940 | INFO     | . Timing measurements:
[2025-11-24 21:15:09] 2025-11-25 02:14:37,940 | INFO     | . get job = 0 s
[2025-11-24 21:15:09] 2025-11-25 02:14:37,940 | INFO     | . initial setup = 2 s
[2025-11-24 21:15:09] 2025-11-25 02:14:37,940 | INFO     | . payload setup = 6 s
[2025-11-24 21:15:09] 2025-11-25 02:14:37,940 | INFO     | . stage-in = 0 s
[2025-11-24 21:15:09] 2025-11-25 02:14:37,940 | INFO     | . payload execution = 68527 s
[2025-11-24 21:15:09] 2025-11-25 02:14:37,940 | INFO     | . stage-out = 3 s
[2025-11-24 21:15:09] 2025-11-25 02:14:37,940 | INFO     | . log creation = 0 s
[2025-11-24 21:15:09] 2025-11-25 02:14:37,940 | INFO     | ..............................
[2025-11-24 21:15:09] 2025-11-25 02:14:38,030 | INFO     | 
[2025-11-24 21:15:09] 2025-11-25 02:14:38,030 | INFO     | job summary report
[2025-11-24 21:15:09] 2025-11-25 02:14:38,030 | INFO     | --------------------------------------------------
[2025-11-24 21:15:09] 2025-11-25 02:14:38,030 | INFO     | PanDA job id: 6895350345
[2025-11-24 21:15:09] 2025-11-25 02:14:38,030 | INFO     | task id: 47556149
[2025-11-24 21:15:09] 2025-11-25 02:14:38,031 | INFO     | errors: (none)
[2025-11-24 21:15:09] 2025-11-25 02:14:38,031 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 21:15:09] 2025-11-25 02:14:38,031 | INFO     | pilot state: finished 
[2025-11-24 21:15:09] 2025-11-25 02:14:38,031 | INFO     | transexitcode: 0
[2025-11-24 21:15:09] 2025-11-25 02:14:38,031 | INFO     | exeerrorcode: 0
[2025-11-24 21:15:09] 2025-11-25 02:14:38,031 | INFO     | exeerrordiag: 
[2025-11-24 21:15:09] 2025-11-25 02:14:38,031 | INFO     | exitcode: 0
[2025-11-24 21:15:09] 2025-11-25 02:14:38,031 | INFO     | exitmsg: OK
[2025-11-24 21:15:09] 2025-11-25 02:14:38,031 | INFO     | cpuconsumptiontime: 536228 s
[2025-11-24 21:15:09] 2025-11-25 02:14:38,031 | INFO     | nevents: 1000
[2025-11-24 21:15:09] 2025-11-25 02:14:38,032 | INFO     | neventsw: 0
[2025-11-24 21:15:09] 2025-11-25 02:14:38,032 | INFO     | pid: 20338
[2025-11-24 21:15:09] 2025-11-25 02:14:38,032 | INFO     | pgrp: 20338
[2025-11-24 21:15:09] 2025-11-25 02:14:38,032 | INFO     | corecount: 8
[2025-11-24 21:15:09] 2025-11-25 02:14:38,032 | INFO     | event service: False
[2025-11-24 21:15:09] 2025-11-25 02:14:38,032 | INFO     | sizes: {0: 2298756, 1: 2298756, 5: 2299046, 11: 2299102, 68537: 2354967, 68541: 2364936, 68545: 2365222}
[2025-11-24 21:15:09] 2025-11-25 02:14:38,032 | INFO     | --------------------------------------------------
[2025-11-24 21:15:09] 2025-11-25 02:14:38,032 | INFO     | 
[2025-11-24 21:15:09] 2025-11-25 02:14:38,032 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-24 21:15:09] 2025-11-25 02:14:38,048 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 21:15:09] 2025-11-25 02:14:38,048 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 21:15:09] 2025-11-25 02:14:38,048 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 21:15:09] 2025-11-25 02:14:38,049 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 21:15:09] 2025-11-25 02:14:38,049 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 21:15:09] 2025-11-25 02:14:38,049 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 21:15:09] 2025-11-25 02:14:38,049 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 21:15:09] 2025-11-25 02:14:38,049 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 21:15:09] 2025-11-25 02:14:38,049 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 21:15:09] 2025-11-25 02:14:38,049 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 21:15:09] 2025-11-25 02:14:38,049 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 21:15:09] 2025-11-25 02:14:38,049 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 21:15:09] 2025-11-25 02:14:38,050 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 21:15:09] 2025-11-25 02:14:38,050 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 21:15:09] 2025-11-25 02:14:38,050 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 21:15:09] 2025-11-25 02:14:38,050 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 21:15:09] 2025-11-25 02:14:38,050 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 21:15:09] 2025-11-25 02:14:38,050 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 21:15:09] 2025-11-25 02:14:38,050 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 21:15:09] 2025-11-25 02:14:38,050 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 21:15:09] 2025-11-25 02:14:38,051 | INFO     | job 6895350345 has completed (purged errors)
[2025-11-24 21:15:09] 2025-11-25 02:14:38,051 | INFO     | overall cleanup function is called
[2025-11-24 21:15:09] 2025-11-25 02:14:39,063 | INFO     | --- collectZombieJob: --- 10, [20338]
[2025-11-24 21:15:09] 2025-11-25 02:14:39,063 | INFO     | zombie collector waiting for pid 20338
[2025-11-24 21:15:09] 2025-11-25 02:14:39,063 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 21:15:09] 2025-11-25 02:14:39,064 | INFO     | collected zombie processes
[2025-11-24 21:15:09] 2025-11-25 02:14:39,064 | INFO     | will attempt to kill all subprocesses of pid=20338
[2025-11-24 21:15:09] 2025-11-25 02:14:39,226 | INFO     | process IDs to be killed: [20338] (in reverse order)
[2025-11-24 21:15:09] 2025-11-25 02:14:39,266 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 21:15:09] 2025-11-25 02:14:39,267 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 21:15:09] 2025-11-25 02:14:39,269 | INFO     | did not find any defunct processes belonging to 20338
[2025-11-24 21:15:09] 2025-11-25 02:14:39,272 | INFO     | did not find any defunct processes belonging to 20338
[2025-11-24 21:15:09] 2025-11-25 02:14:39,274 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 21:15:09] 2025-11-25 02:14:39,274 | INFO     | ready for new job
[2025-11-24 21:15:09] 2025-11-25 02:14:39,274 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 21:15:09] 2025-11-25 02:14:39,278 | INFO     | ***************************************
[2025-11-24 21:15:09] 2025-11-25 02:14:39,278 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 21:15:09] 2025-11-25 02:14:39,278 | INFO     | ***************************************
[2025-11-24 21:15:09] 2025-11-25 02:14:39,278 | INFO     | 
[2025-11-24 21:15:09] 2025-11-25 02:14:39,279 | INFO     | architecture information:
[2025-11-24 21:15:09] 2025-11-25 02:14:39,280 | INFO     | executing command: cat /etc/os-release
[2025-11-24 21:15:09] 2025-11-25 02:14:39,292 | INFO     | cat /etc/os-release:
[2025-11-24 21:15:09] NAME="CentOS Linux"
[2025-11-24 21:15:09] VERSION="7 (Core)"
[2025-11-24 21:15:09] ID="centos"
[2025-11-24 21:15:09] ID_LIKE="rhel fedora"
[2025-11-24 21:15:09] VERSION_ID="7"
[2025-11-24 21:15:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 21:15:09] ANSI_COLOR="0;31"
[2025-11-24 21:15:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 21:15:09] HOME_URL="https://www.centos.org/"
[2025-11-24 21:15:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 21:15:09] 
[2025-11-24 21:15:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 21:15:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 21:15:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 21:15:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 21:15:09] 
[2025-11-24 21:15:09] 2025-11-25 02:14:39,292 | INFO     | ***************************************
[2025-11-24 21:15:09] 2025-11-25 02:14:39,794 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-24 21:15:09] 2025-11-25 02:14:39,807 | INFO     | sufficient remaining disk space (24877465600 B)
[2025-11-24 21:15:09] 2025-11-25 02:14:39,807 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 21:15:09] 2025-11-25 02:14:39,807 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 21:15:09] 2025-11-25 02:14:39,807 | INFO     | update_server=False
[2025-11-24 21:15:09] 2025-11-25 02:14:39,808 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 21:15:09] 2025-11-25 02:14:39,808 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 21:15:09] 2025-11-25 02:14:39,808 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 21:15:09] 2025-11-25 02:14:39,808 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 21:15:09] 2025-11-25 02:14:39,809 | INFO     | aborting loop
[2025-11-24 21:15:09] 2025-11-25 02:14:39,809 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 21:15:09] 2025-11-25 02:14:39,925 | INFO     | all data control threads have been joined
[2025-11-24 21:15:09] 2025-11-25 02:14:39,950 | INFO     | all payload control threads have been joined
[2025-11-24 21:15:09] 2025-11-25 02:14:40,674 | INFO     | all job control threads have been joined
[2025-11-24 21:15:09] 2025-11-25 02:14:40,813 | INFO     | [job] retrieve thread has finished
[2025-11-24 21:15:09] 2025-11-25 02:14:40,814 | INFO     | [job] queue monitor thread has finished
[2025-11-24 21:15:09] 2025-11-25 02:14:40,814 | INFO     | [job] job monitor thread has finished
[2025-11-24 21:15:09] 2025-11-25 02:14:40,930 | INFO     | [data] control thread has finished
[2025-11-24 21:15:09] 2025-11-25 02:14:40,941 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 21:15:09] 2025-11-25 02:14:40,955 | INFO     | [payload] control thread has finished
[2025-11-24 21:15:09] 2025-11-25 02:14:41,010 | INFO     | [payload] failed_post thread has finished
[2025-11-24 21:15:09] 2025-11-25 02:14:41,171 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 21:15:09] 2025-11-25 02:14:41,178 | INFO     | [data] copytool_in thread has finished
[2025-11-24 21:15:09] 2025-11-25 02:14:41,679 | INFO     | [job] control thread has finished
[2025-11-24 21:15:09] 2025-11-25 02:14:41,811 | INFO     | [data] copytool_out thread has finished
[2025-11-24 21:15:09] 2025-11-25 02:14:41,845 | INFO     | [payload] validate_post thread has finished
[2025-11-24 21:15:09] 2025-11-25 02:14:42,128 | INFO     | [job] validate thread has finished
[2025-11-24 21:15:09] 2025-11-25 02:14:42,133 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 21:15:09] 2025-11-25 02:14:43,815 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 21:15:09] 2025-11-25 02:14:50,681 | INFO     | job.realtimelogging is not enabled
[2025-11-24 21:15:09] 2025-11-25 02:14:51,639 | INFO     | [monitor] cgroup control has ended
[2025-11-24 21:15:09] 2025-11-25 02:14:51,686 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 21:15:09] 2025-11-25 02:14:53,761 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139781133162304)>', '<ExcThread(monitor, started 139780247516928)>']
[2025-11-24 21:15:09] 2025-11-25 02:14:58,766 | INFO     | all workflow threads have been joined
[2025-11-24 21:15:09] 2025-11-25 02:14:58,766 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 21:15:09] 2025-11-25 02:14:58,766 | INFO     | traces error code: 0
[2025-11-24 21:15:09] 2025-11-25 02:14:58,767 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 21:15:09] 2025-11-25 02:15:09,723 | INFO     | PID=32274 has CPU usage=4.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-24 21:15:09] 2025-11-25 02:15:09,723 | INFO     | .. there are 2 such processes running
[2025-11-24 21:15:09] 2025-11-25 02:15:09,724 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 21:15:09] 2025-11-25 02:15:09,724 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 21:15:09] 2025-11-25 02:15:09,724 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 21:15:09] 2025-11-25 02:15:09,724 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 21:15:09] 2025-11-25 02:15:09,725 | INFO     | [monitor] control thread has ended
[2025-11-24 21:15:09] 2025-11-25 02:15:09,801 [wrapper] ==== pilot stdout END ====
[2025-11-24 21:15:09] 2025-11-25 02:15:09,803 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 21:15:09] 2025-11-25 02:15:09,805 [wrapper] pilotpid: 32274
[2025-11-24 21:15:09] 2025-11-25 02:15:09,807 [wrapper] Pilot exit status: 0
[2025-11-24 21:15:09] 2025-11-25 02:15:09,814 [wrapper] pandaids: 6895350345 6895350345
[2025-11-24 21:15:09] 2025-11-25 02:15:09,840 [wrapper] cleanup supervisor_pilot 17633 32276
[2025-11-24 21:15:09] 2025-11-25 02:15:09,842 [wrapper] Test setup, not cleaning
[2025-11-24 21:15:09] 2025-11-25 02:15:09,845 [wrapper] apfmon messages muted
[2025-11-24 21:15:09] 2025-11-25 02:15:09,847 [wrapper] ==== wrapper stdout END ====
[2025-11-24 21:15:09] 2025-11-25 02:15:09,850 [wrapper] ==== wrapper stderr END ====
[2025-11-24 21:15:09]  *** Error codes and diagnostics ***
[2025-11-24 21:15:09]     "exeErrorCode": 0,
[2025-11-24 21:15:09]     "exeErrorDiag": "",
[2025-11-24 21:15:09]     "pilotErrorCode": 0,
[2025-11-24 21:15:09]     "pilotErrorDiag": "",
[2025-11-24 21:15:09]  *** Listing of results directory ***
[2025-11-24 21:15:09] total 1734424
[2025-11-24 21:15:09] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-24 21:15:09] -rw-r--r-- 1 boincer umatlas    576529 Nov 22 15:41 pilot3.tar.gz
[2025-11-24 21:15:09] -rw-r--r-- 1 boincer umatlas      5112 Nov 22 16:06 queuedata.json
[2025-11-24 21:15:09] -rwx------ 1 boincer umatlas     36292 Nov 22 16:08 runpilot2-wrapper.sh
[2025-11-24 21:15:09] -rw-r--r-- 1 boincer umatlas       100 Nov 23 23:08 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 21:15:09] -rwxr-xr-x 1 boincer umatlas      7986 Nov 23 23:08 run_atlas
[2025-11-24 21:15:09] -rw-r--r-- 1 boincer umatlas       105 Nov 23 23:08 job.xml
[2025-11-24 21:15:09] -rw-r--r-- 3 boincer umatlas 409359203 Nov 23 23:08 EVNT.47483658._001116.pool.root.1
[2025-11-24 21:15:09] -rw-r--r-- 3 boincer umatlas 409359203 Nov 23 23:08 ATLAS.root_0
[2025-11-24 21:15:09] -rw-r--r-- 2 boincer umatlas     15847 Nov 23 23:08 start_atlas.sh
[2025-11-24 21:15:09] drwxrwx--x 2 boincer umatlas      4096 Nov 23 23:08 shared
[2025-11-24 21:15:09] -rw-r--r-- 2 boincer umatlas    590104 Nov 23 23:08 input.tar.gz
[2025-11-24 21:15:09] -rw-r--r-- 1 boincer umatlas         0 Nov 23 23:08 boinc_lockfile
[2025-11-24 21:15:09] -rw-r--r-- 1 boincer umatlas      2785 Nov 24 02:11 pandaJob.out
[2025-11-24 21:15:09] -rw------- 1 boincer umatlas        57 Nov 24 02:11 setup.sh.local
[2025-11-24 21:15:09] -rw------- 1 boincer umatlas    989786 Nov 24 02:11 agis_schedconf.cvmfs.json
[2025-11-24 21:15:09] -rw-r--r-- 1 boincer umatlas       533 Nov 24 21:04 boinc_task_state.xml
[2025-11-24 21:15:09] -rw-r--r-- 1 boincer umatlas      5953 Nov 24 21:10 init_data.xml
[2025-11-24 21:15:09] -rw------- 1 boincer umatlas 929840051 Nov 24 21:13 HITS.47556149._001029.pool.root.1
[2025-11-24 21:15:09] -rw------- 1 boincer umatlas      1078 Nov 24 21:14 memory_monitor_summary.json
[2025-11-24 21:15:09] -rw------- 1 boincer umatlas   1516227 Nov 24 21:14 agis_ddmendpoints.agis.ALL.json
[2025-11-24 21:15:09] -rw------- 1 boincer umatlas   2298583 Nov 24 21:14 log.47556149._001029.job.log.tgz.1
[2025-11-24 21:15:09] -rw------- 1 boincer umatlas      8651 Nov 24 21:14 heartbeat.json
[2025-11-24 21:15:09] -rw-r--r-- 1 boincer umatlas        29 Nov 24 21:14 wrapper_checkpoint.txt
[2025-11-24 21:15:09] -rw-r--r-- 1 boincer umatlas      8192 Nov 24 21:14 boinc_mmap_file
[2025-11-24 21:15:09] -rw------- 1 boincer umatlas       820 Nov 24 21:15 pilotlog.txt
[2025-11-24 21:15:09] -rw------- 1 boincer umatlas        96 Nov 24 21:15 pilot_heartbeat.json
[2025-11-24 21:15:09] -rw------- 1 boincer umatlas   9489466 Nov 24 21:15 log.47556149._001029.job.log.1
[2025-11-24 21:15:09] -rw------- 1 boincer umatlas       353 Nov 24 21:15 output.list
[2025-11-24 21:15:09] -rw-r--r-- 1 boincer umatlas       620 Nov 24 21:15 runtime_log
[2025-11-24 21:15:09] -rw------- 1 boincer umatlas  11806720 Nov 24 21:15 result.tar.gz
[2025-11-24 21:15:09] -rw-r--r-- 1 boincer umatlas      9423 Nov 24 21:15 runtime_log.err
[2025-11-24 21:15:09] -rw------- 1 boincer umatlas       792 Nov 24 21:15 2Y6NDm709g8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmiPKKDmt1EQGm.diag
[2025-11-24 21:15:09] -rw-r--r-- 1 boincer umatlas     23405 Nov 24 21:15 stderr.txt
[2025-11-24 21:15:09] HITS file was successfully produced:
[2025-11-24 21:15:09] -rw------- 1 boincer umatlas 929840051 Nov 24 21:13 shared/HITS.pool.root.1
[2025-11-24 21:15:09]  *** Contents of shared directory: ***
[2025-11-24 21:15:09] total 1319948
[2025-11-24 21:15:09] -rw-r--r-- 3 boincer umatlas 409359203 Nov 23 23:08 ATLAS.root_0
[2025-11-24 21:15:09] -rw-r--r-- 2 boincer umatlas     15847 Nov 23 23:08 start_atlas.sh
[2025-11-24 21:15:09] -rw-r--r-- 2 boincer umatlas    590104 Nov 23 23:08 input.tar.gz
[2025-11-24 21:15:09] -rw------- 1 boincer umatlas 929840051 Nov 24 21:13 HITS.pool.root.1
[2025-11-24 21:15:09] -rw------- 1 boincer umatlas  11806720 Nov 24 21:15 result.tar.gz
21:15:11 (20392): run_atlas exited; CPU time 535871.566452
21:15:11 (20392): called boinc_finish(0)

</stderr_txt>
]]>

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