Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
04:37:36 (1238549): wrapper (7.7.26015): starting
04:37:36 (1238549): wrapper: running run_atlas (--nthreads 3)
[2025-11-24 04:37:36] Arguments: --nthreads 3
[2025-11-24 04:37:36] Threads: 3
[2025-11-24 04:37:36] Checking for CVMFS
[2025-11-24 04:37:36] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 04:37:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 04:37:36] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 04:37:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 04:37:37] 2.9.2.0 154488 232 60208 153231 0 88 34943548 36864001 0 130560 0 3255347 100.000 6496 4880 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-24 04:37:37] CVMFS is ok
[2025-11-24 04:37:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 04:37:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 04:37:37] Further information can be found at the LHC@home message board.
[2025-11-24 04:37:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 04:37:37] Checking for apptainer binary...
[2025-11-24 04:37:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 04:37:37] Running /usr/bin/apptainer --version
[2025-11-24 04:37:37] apptainer version 1.4.1-1.1
[2025-11-24 04:37:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 04:37:37] thA335
[2025-11-24 04:37:37] apptainer works
[2025-11-24 04:37:37] Set ATHENA_PROC_NUMBER=3
[2025-11-24 04:37:37] Set ATHENA_CORE_NUMBER=3
[2025-11-24 04:37:37] Starting ATLAS job with PandaID=6895348811
[2025-11-24 04:37:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 04:41:55]  *** The last 200 lines of the pilot log: ***
[2025-11-24 04:41:55] 2025-11-24 03:41:06,541 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 04:41:55] 2025-11-24 03:41:06,541 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 04:41:55] 2025-11-24 03:41:06,541 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 04:41:55] 2025-11-24 03:41:06,583 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-24 04:41:55] 2025-11-24 03:41:06,584 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-24 04:41:55] 2025-11-24 03:41:06,584 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 04:41:55] 2025-11-24 03:41:06,584 | INFO     | will abort loop
[2025-11-24 04:41:55] 2025-11-24 03:41:07,089 | INFO     | all data control threads have been joined
[2025-11-24 04:41:55] 2025-11-24 03:41:07,120 | INFO     | all payload control threads have been joined
[2025-11-24 04:41:55] 2025-11-24 03:41:07,547 | INFO     | [job] retrieve thread has finished
[2025-11-24 04:41:55] 2025-11-24 03:41:07,548 | INFO     | [job] queue monitor thread has finished
[2025-11-24 04:41:55] 2025-11-24 03:41:07,587 | INFO     | [job] job monitor thread has finished
[2025-11-24 04:41:55] 2025-11-24 03:41:07,915 | INFO     | [payload] validate_post thread has finished
[2025-11-24 04:41:55] 2025-11-24 03:41:07,964 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 04:41:55] 2025-11-24 03:41:08,070 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 04:41:55] 2025-11-24 03:41:08,090 | INFO     | [job] validate thread has finished
[2025-11-24 04:41:55] 2025-11-24 03:41:08,094 | INFO     | all job control threads have been joined
[2025-11-24 04:41:55] 2025-11-24 03:41:08,095 | INFO     | [data] control thread has finished
[2025-11-24 04:41:55] 2025-11-24 03:41:08,126 | INFO     | [payload] control thread has finished
[2025-11-24 04:41:55] 2025-11-24 03:41:08,171 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 04:41:55] 2025-11-24 03:41:08,220 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 04:41:55] 2025-11-24 03:41:08,317 | INFO     | [data] copytool_in thread has finished
[2025-11-24 04:41:55] 2025-11-24 03:41:08,439 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 04:41:55] 2025-11-24 03:41:08,549 | INFO     | [payload] failed_post thread has finished
[2025-11-24 04:41:55] 2025-11-24 03:41:09,100 | INFO     | [job] control thread has finished
[2025-11-24 04:41:55] 2025-11-24 03:41:09,971 | INFO     | [data] copytool_out thread has finished
[2025-11-24 04:41:55] 2025-11-24 03:41:10,548 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 04:41:55] 2025-11-24 03:41:37,292 | INFO     | PID=1242279 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 04:41:55] 2025-11-24 03:41:37,292 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 04:41:55] 2025-11-24 03:41:37,292 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 04:41:55] 2025-11-24 03:41:37,292 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 04:41:55] 2025-11-24 03:41:48,212 | INFO     | [monitor] cgroup control has ended
[2025-11-24 04:41:55] 2025-11-24 03:41:49,998 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139678494459712)>', '<ExcThread(monitor, started 139677990360832)>']
[2025-11-24 04:41:55] 2025-11-24 03:41:50,361 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 04:41:55] 2025-11-24 03:41:50,362 | INFO     | [monitor] control thread has ended
[2025-11-24 04:41:55] 2025-11-24 03:41:55,024 | INFO     | all workflow threads have been joined
[2025-11-24 04:41:55] 2025-11-24 03:41:55,024 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 04:41:55] 2025-11-24 03:41:55,025 | INFO     | traces error code: 0
[2025-11-24 04:41:55] 2025-11-24 03:41:55,025 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 04:41:55] 2025-11-24 03:41:55,073 [wrapper] ==== pilot stdout END ====
[2025-11-24 04:41:55] 2025-11-24 03:41:55,076 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 04:41:55] 2025-11-24 03:41:55,080 [wrapper] pilotpid: 1242279
[2025-11-24 04:41:55] 2025-11-24 03:41:55,083 [wrapper] Pilot exit status: 0
[2025-11-24 04:41:55] 2025-11-24 03:41:55,091 [wrapper] pandaids: 6895348811
[2025-11-24 04:41:55] 2025-11-24 03:41:55,107 [wrapper] cleanup supervisor_pilot 1242285 1242280
[2025-11-24 04:41:55] 2025-11-24 03:41:55,110 [wrapper] Test setup, not cleaning
[2025-11-24 04:41:55] 2025-11-24 03:41:55,113 [wrapper] apfmon messages muted
[2025-11-24 04:41:55] 2025-11-24 03:41:55,115 [wrapper] ==== wrapper stdout END ====
[2025-11-24 04:41:55] 2025-11-24 03:41:55,118 [wrapper] ==== wrapper stderr END ====
[2025-11-24 04:41:55]  *** Error codes and diagnostics ***
[2025-11-24 04:41:55]     "exeErrorCode": 65,
[2025-11-24 04:41:55]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-24 04:41:55]     "pilotErrorCode": 1305,
[2025-11-24 04:41:55]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-24 04:41:55]  *** Listing of results directory ***
[2025-11-24 04:41:55] total 405964
[2025-11-24 04:41:55] -rw-r--r-- 1 boinc boinc    576529 Nov 22 20:25 pilot3.tar.gz
[2025-11-24 04:41:55] -rwx------ 1 boinc boinc     36292 Nov 22 20:56 runpilot2-wrapper.sh
[2025-11-24 04:41:55] -rw-r--r-- 1 boinc boinc      5112 Nov 22 20:56 queuedata.json
[2025-11-24 04:41:55] -rw-r--r-- 1 boinc boinc       100 Nov 24 04:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 04:41:55] -rwxr-xr-x 1 boinc boinc      7986 Nov 24 04:37 run_atlas
[2025-11-24 04:41:55] -rw-r--r-- 1 boinc boinc       105 Nov 24 04:37 job.xml
[2025-11-24 04:41:55] -rw-r--r-- 2 boinc boinc 411501534 Nov 24 04:37 EVNT.47483658._001111.pool.root.1
[2025-11-24 04:41:55] -rw-r--r-- 2 boinc boinc    590105 Nov 24 04:37 input.tar.gz
[2025-11-24 04:41:55] -rw-r--r-- 2 boinc boinc     15847 Nov 24 04:37 start_atlas.sh
[2025-11-24 04:41:55] drwxrwx--x 2 boinc boinc      4096 Nov 24 04:37 shared
[2025-11-24 04:41:55] -rw-r--r-- 1 boinc boinc         0 Nov 24 04:37 boinc_setup_complete
[2025-11-24 04:41:55] -rw-r--r-- 1 boinc boinc      6195 Nov 24 04:37 init_data.xml
[2025-11-24 04:41:55] -rw-r--r-- 1 boinc boinc         0 Nov 24 04:37 boinc_lockfile
[2025-11-24 04:41:55] -rw-r--r-- 1 boinc boinc      2783 Nov 24 04:37 pandaJob.out
[2025-11-24 04:41:55] -rw------- 1 boinc boinc    989786 Nov 24 04:37 agis_schedconf.cvmfs.json
[2025-11-24 04:41:55] -rw------- 1 boinc boinc   1526164 Nov 24 04:37 agis_ddmendpoints.agis.ALL.json
[2025-11-24 04:41:55] drwx------ 5 boinc boinc      4096 Nov 24 04:37 pilot3
[2025-11-24 04:41:55] -rw-r--r-- 1 boinc boinc       522 Nov 24 04:38 boinc_task_state.xml
[2025-11-24 04:41:55] -rw------- 1 boinc boinc       954 Nov 24 04:38 memory_monitor_summary.json
[2025-11-24 04:41:55] -rw------- 1 boinc boinc     56115 Nov 24 04:39 log.47556149._000974.job.log.tgz.1
[2025-11-24 04:41:55] -rw------- 1 boinc boinc        95 Nov 24 04:40 pilot_heartbeat.json
[2025-11-24 04:41:55] -rw------- 1 boinc boinc      8402 Nov 24 04:41 heartbeat.json
[2025-11-24 04:41:55] -rw-r--r-- 1 boinc boinc      8192 Nov 24 04:41 boinc_mmap_file
[2025-11-24 04:41:55] -rw-r--r-- 1 boinc boinc        22 Nov 24 04:41 wrapper_checkpoint.txt
[2025-11-24 04:41:55] -rw------- 1 boinc boinc      4938 Nov 24 04:41 pilotlog.txt
[2025-11-24 04:41:55] -rw------- 1 boinc boinc     93706 Nov 24 04:41 log.47556149._000974.job.log.1
[2025-11-24 04:41:55] -rw------- 1 boinc boinc       186 Nov 24 04:41 output.list
[2025-11-24 04:41:55] -rw-r--r-- 1 boinc boinc       620 Nov 24 04:41 runtime_log
[2025-11-24 04:41:55] -rw------- 1 boinc boinc    174080 Nov 24 04:41 result.tar.gz
[2025-11-24 04:41:55] -rw------- 1 boinc boinc       649 Nov 24 04:41 xrdNDmkt8g8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmcMKKDmFILKvm.diag
[2025-11-24 04:41:55] -rw-r--r-- 1 boinc boinc      8744 Nov 24 04:41 runtime_log.err
[2025-11-24 04:41:55] -rw-r--r-- 1 boinc boinc      7939 Nov 24 04:41 stderr.txt
[2025-11-24 04:41:55] No HITS result produced
[2025-11-24 04:41:55]  *** Contents of shared directory: ***
[2025-11-24 04:41:55] total 402632
[2025-11-24 04:41:55] -rw-r--r-- 2 boinc boinc 411501534 Nov 24 04:37 ATLAS.root_0
[2025-11-24 04:41:55] -rw-r--r-- 2 boinc boinc    590105 Nov 24 04:37 input.tar.gz
[2025-11-24 04:41:55] -rw-r--r-- 2 boinc boinc     15847 Nov 24 04:37 start_atlas.sh
[2025-11-24 04:41:55] -rw------- 1 boinc boinc    174080 Nov 24 04:41 result.tar.gz
04:41:56 (1238549): run_atlas exited; CPU time 32.150536
04:41:56 (1238549): called boinc_finish(0)

</stderr_txt>
]]>

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