Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:51:04 (162208): wrapper (7.7.26015): starting
00:51:04 (162208): wrapper: running run_atlas (--nthreads 12)
[2025-11-25 00:51:04] Arguments: --nthreads 12
[2025-11-25 00:51:04] Threads: 12
[2025-11-25 00:51:04] Checking for CVMFS
[2025-11-25 00:51:05] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 00:51:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 00:51:05] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 00:51:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 00:51:05] 2.13.2.0 7693 31932 169016 153272 3 101 38218350 39288832 7757 16776704 0 27522108 99.633 24962105 31520 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 00:51:05] CVMFS is ok
[2025-11-25 00:51:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 00:51:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 00:51:05] Further information can be found at the LHC@home message board.
[2025-11-25 00:51:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 00:51:05] Checking for apptainer binary...
[2025-11-25 00:51:05] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 00:51:05] Running /usr/bin/apptainer --version
[2025-11-25 00:51:05] apptainer version 1.4.4-1.el9
[2025-11-25 00:51:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 00:51:05] c-210-18.aglt2.org
[2025-11-25 00:51:05] apptainer works
[2025-11-25 00:51:05] Set ATHENA_PROC_NUMBER=12
[2025-11-25 00:51:05] Set ATHENA_CORE_NUMBER=12
[2025-11-25 00:51:05] Starting ATLAS job with PandaID=6895355487
[2025-11-25 00:51:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 19:29:39]  *** The last 200 lines of the pilot log: ***
[2025-11-26 19:29:39] 2025-11-27 00:28:24,212 | INFO     | intersect: -5418478338.255473
[2025-11-26 19:29:39] 2025-11-27 00:28:24,216 | INFO     | chi2: 11.553582519928998
[2025-11-26 19:29:39] 2025-11-27 00:28:24,231 | INFO     | sum of square deviations: 4891715152622.195
[2025-11-26 19:29:39] 2025-11-27 00:28:25,138 | INFO     | monitor loop #8983: job 0:6895355487 is in state 'finished'
[2025-11-26 19:29:39] 2025-11-27 00:28:25,139 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 19:29:39] 2025-11-27 00:28:25,564 | INFO     | time since job start (153418s) is within the limit (172800.0s)
[2025-11-26 19:29:39] 2025-11-27 00:28:26,200 | INFO     | sum of deviations: 16260171997406.66
[2025-11-26 19:29:39] 2025-11-27 00:28:26,200 | INFO     | mean x: 1764126409.9820573
[2025-11-26 19:29:39] 2025-11-27 00:28:26,208 | INFO     | mean y: 3608274.080542265
[2025-11-26 19:29:39] 2025-11-27 00:28:26,209 | INFO     | intersect: -5860387881.971031
[2025-11-26 19:29:39] 2025-11-27 00:28:26,220 | INFO     | chi2: 7.952512417203023
[2025-11-26 19:29:39] 2025-11-27 00:28:26,221 | INFO     | current chi2=7.952512417203023 (change=31.168428463763682 %)
[2025-11-26 19:29:39] 2025-11-27 00:28:26,228 | INFO     | sum of square deviations: 4862523269811.754
[2025-11-26 19:29:39] 2025-11-27 00:28:27,218 | INFO     | sum of deviations: 17373941365121.928
[2025-11-26 19:29:39] 2025-11-27 00:28:27,219 | INFO     | mean x: 1764126257.4990013
[2025-11-26 19:29:39] 2025-11-27 00:28:27,219 | INFO     | mean y: 3614091.1921693967
[2025-11-26 19:29:39] 2025-11-27 00:28:27,219 | INFO     | intersect: -6299661894.908398
[2025-11-26 19:29:39] 2025-11-27 00:28:27,296 | INFO     | chi2: 4.44970660586883
[2025-11-26 19:29:39] 2025-11-27 00:28:27,296 | INFO     | current chi2=4.44970660586883 (change=44.04653054997888 %)
[2025-11-26 19:29:39] 2025-11-27 00:28:27,454 | INFO     | sum of square deviations: 4833446281227.641
[2025-11-26 19:29:39] 2025-11-27 00:28:27,691 | INFO     | monitor loop #8984: job 0:6895355487 is in state 'finished'
[2025-11-26 19:29:39] 2025-11-27 00:28:27,691 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 19:29:39] 2025-11-27 00:28:30,316 | INFO     | monitor loop #8985: job 0:6895355487 is in state 'finished'
[2025-11-26 19:29:39] 2025-11-27 00:28:30,317 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 19:29:39] 2025-11-27 00:28:30,664 | INFO     | sum of deviations: 17853746242345.71
[2025-11-26 19:29:39] 2025-11-27 00:28:30,665 | INFO     | mean x: 1764126105.0120096
[2025-11-26 19:29:39] 2025-11-27 00:28:30,665 | INFO     | mean y: 3616606.9759807847
[2025-11-26 19:29:39] 2025-11-27 00:28:30,665 | INFO     | intersect: -6512698664.94682
[2025-11-26 19:29:39] 2025-11-27 00:28:30,707 | INFO     | chi2: 3.6508444704543344
[2025-11-26 19:29:39] 2025-11-27 00:28:30,708 | INFO     | current chi2=3.6508444704543344 (change=17.95314177255768 %)
[2025-11-26 19:29:39] 2025-11-27 00:28:30,708 | INFO     | right removable region: 2497
[2025-11-26 19:29:39] 2025-11-27 00:28:30,733 | INFO     | sum of square deviations: 4891702482220.123
[2025-11-26 19:29:39] 2025-11-27 00:28:33,112 | INFO     | monitor loop #8986: job 0:6895355487 is in state 'finished'
[2025-11-26 19:29:39] 2025-11-27 00:28:33,113 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 19:29:39] 2025-11-27 00:28:34,360 | INFO     | sum of deviations: 14197651945096.441
[2025-11-26 19:29:39] 2025-11-27 00:28:34,409 | INFO     | mean x: 1764126714.98126
[2025-11-26 19:29:39] 2025-11-27 00:28:34,410 | INFO     | mean y: 3607189.1371610845
[2025-11-26 19:29:39] 2025-11-27 00:28:34,410 | INFO     | intersect: -5116585050.146947
[2025-11-26 19:29:39] 2025-11-27 00:28:34,522 | INFO     | chi2: 9.119262342710474
[2025-11-26 19:29:39] 2025-11-27 00:28:34,522 | INFO     | current chi2=9.119262342710474 (change=21.069829838662752 %)
[2025-11-26 19:29:39] 2025-11-27 00:28:34,522 | INFO     | left removable region: 10
[2025-11-26 19:29:39] 2025-11-27 00:28:34,639 | INFO     | sum of square deviations: 4769864190070.921
[2025-11-26 19:29:39] 2025-11-27 00:28:35,725 | INFO     | monitor loop #8987: job 0:6895355487 is in state 'finished'
[2025-11-26 19:29:39] 2025-11-27 00:28:35,726 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 19:29:39] 2025-11-27 00:28:35,773 | INFO     | PID=165859 has CPU usage=4.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 19:29:39] 2025-11-27 00:28:35,773 | INFO     | .. there are 8 such processes running
[2025-11-26 19:29:39] 2025-11-27 00:28:36,776 | INFO     | time since job start (153429s) is within the limit (172800.0s)
[2025-11-26 19:29:39] 2025-11-27 00:28:37,363 | INFO     | sum of deviations: 16703210763353.832
[2025-11-26 19:29:39] 2025-11-27 00:28:37,364 | INFO     | mean x: 1764126379.544029
[2025-11-26 19:29:39] 2025-11-27 00:28:37,364 | INFO     | mean y: 3623252.5721753114
[2025-11-26 19:29:39] 2025-11-27 00:28:37,364 | INFO     | intersect: -6174031614.846205
[2025-11-26 19:29:39] 2025-11-27 00:28:37,430 | INFO     | chi2: 1.0311731837126321
[2025-11-26 19:29:39] 2025-11-27 00:28:37,430 | INFO     | current memory leak: 3.50 B/s (using 2487 data points, chi2=1.03)
[2025-11-26 19:29:39] 2025-11-27 00:28:37,509 | INFO     | could have reported an average CPU frequency of 2599 MHz (86 samples)
[2025-11-26 19:29:39] 2025-11-27 00:28:37,510 | INFO     | ..............................
[2025-11-26 19:29:39] 2025-11-27 00:28:37,510 | INFO     | . Timing measurements:
[2025-11-26 19:29:39] 2025-11-27 00:28:37,510 | INFO     | . get job = 0 s
[2025-11-26 19:29:39] 2025-11-27 00:28:37,510 | INFO     | . initial setup = 3 s
[2025-11-26 19:29:39] 2025-11-27 00:28:37,510 | INFO     | . payload setup = 10 s
[2025-11-26 19:29:39] 2025-11-27 00:28:37,510 | INFO     | . stage-in = 0 s
[2025-11-26 19:29:39] 2025-11-27 00:28:37,510 | INFO     | . payload execution = 153293 s
[2025-11-26 19:29:39] 2025-11-27 00:28:37,510 | INFO     | . stage-out = 19 s
[2025-11-26 19:29:39] 2025-11-27 00:28:37,510 | INFO     | . log creation = 7 s
[2025-11-26 19:29:39] 2025-11-27 00:28:37,510 | INFO     | ..............................
[2025-11-26 19:29:39] 2025-11-27 00:28:38,250 | INFO     | 
[2025-11-26 19:29:39] 2025-11-27 00:28:38,250 | INFO     | job summary report
[2025-11-26 19:29:39] 2025-11-27 00:28:38,251 | INFO     | --------------------------------------------------
[2025-11-26 19:29:39] 2025-11-27 00:28:38,251 | INFO     | PanDA job id: 6895355487
[2025-11-26 19:29:39] 2025-11-27 00:28:38,251 | INFO     | task id: 47556137
[2025-11-26 19:29:39] 2025-11-27 00:28:38,251 | INFO     | errors: (none)
[2025-11-26 19:29:39] 2025-11-27 00:28:38,251 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 19:29:39] 2025-11-27 00:28:38,251 | INFO     | pilot state: finished 
[2025-11-26 19:29:39] 2025-11-27 00:28:38,251 | INFO     | transexitcode: 0
[2025-11-26 19:29:39] 2025-11-27 00:28:38,251 | INFO     | exeerrorcode: 0
[2025-11-26 19:29:39] 2025-11-27 00:28:38,251 | INFO     | exeerrordiag: 
[2025-11-26 19:29:39] 2025-11-27 00:28:38,251 | INFO     | exitcode: 0
[2025-11-26 19:29:39] 2025-11-27 00:28:38,252 | INFO     | exitmsg: OK
[2025-11-26 19:29:39] 2025-11-27 00:28:38,252 | INFO     | cpuconsumptiontime: 333285 s
[2025-11-26 19:29:39] 2025-11-27 00:28:38,252 | INFO     | nevents: 1000
[2025-11-26 19:29:39] 2025-11-27 00:28:38,252 | INFO     | neventsw: 0
[2025-11-26 19:29:39] 2025-11-27 00:28:38,252 | INFO     | pid: 172557
[2025-11-26 19:29:39] 2025-11-27 00:28:38,252 | INFO     | pgrp: 172557
[2025-11-26 19:29:39] 2025-11-27 00:28:38,252 | INFO     | corecount: 12
[2025-11-26 19:29:39] 2025-11-27 00:28:38,252 | INFO     | event service: False
[2025-11-26 19:29:39] 2025-11-27 00:28:38,252 | INFO     | sizes: {0: 2284138, 1: 2284337, 11: 2284599, 12: 2284627, 153309: 2380183, 153310: 2380182, 153331: 2389365, 153334: 2389421, 153408: 2389667}
[2025-11-26 19:29:39] 2025-11-27 00:28:38,252 | INFO     | --------------------------------------------------
[2025-11-26 19:29:39] 2025-11-27 00:28:38,252 | INFO     | 
[2025-11-26 19:29:39] 2025-11-27 00:28:38,253 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-26 19:29:39] 2025-11-27 00:28:38,456 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 19:29:39] 2025-11-27 00:28:38,456 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 19:29:39] 2025-11-27 00:28:38,456 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 19:29:39] 2025-11-27 00:28:38,456 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 19:29:39] 2025-11-27 00:28:38,456 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 19:29:39] 2025-11-27 00:28:38,456 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 19:29:39] 2025-11-27 00:28:38,456 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 19:29:39] 2025-11-27 00:28:38,457 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 19:29:39] 2025-11-27 00:28:38,457 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 19:29:39] 2025-11-27 00:28:38,457 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 19:29:39] 2025-11-27 00:28:38,457 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 19:29:39] 2025-11-27 00:28:38,457 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 19:29:39] 2025-11-27 00:28:38,457 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 19:29:39] 2025-11-27 00:28:38,457 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 19:29:39] 2025-11-27 00:28:38,457 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 19:29:39] 2025-11-27 00:28:38,457 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 19:29:39] 2025-11-27 00:28:38,458 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 19:29:39] 2025-11-27 00:28:38,458 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 19:29:39] 2025-11-27 00:28:38,458 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 19:29:39] 2025-11-27 00:28:38,458 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 19:29:39] 2025-11-27 00:28:38,458 | INFO     | job 6895355487 has completed (purged errors)
[2025-11-26 19:29:39] 2025-11-27 00:28:38,458 | INFO     | overall cleanup function is called
[2025-11-26 19:29:39] 2025-11-27 00:28:39,646 | INFO     | --- collectZombieJob: --- 10, [172557]
[2025-11-26 19:29:39] 2025-11-27 00:28:39,647 | INFO     | zombie collector waiting for pid 172557
[2025-11-26 19:29:39] 2025-11-27 00:28:39,647 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 19:29:39] 2025-11-27 00:28:39,647 | INFO     | collected zombie processes
[2025-11-26 19:29:39] 2025-11-27 00:28:39,647 | INFO     | will attempt to kill all subprocesses of pid=172557
[2025-11-26 19:29:39] 2025-11-27 00:28:43,394 | INFO     | process IDs to be killed: [172557] (in reverse order)
[2025-11-26 19:29:39] 2025-11-27 00:28:44,168 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 19:29:39] 2025-11-27 00:28:44,169 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 19:29:39] 2025-11-27 00:28:44,283 | INFO     | did not find any defunct processes belonging to 172557
[2025-11-26 19:29:39] 2025-11-27 00:28:44,447 | INFO     | did not find any defunct processes belonging to 172557
[2025-11-26 19:29:39] 2025-11-27 00:28:44,508 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 19:29:39] 2025-11-27 00:28:44,508 | INFO     | ready for new job
[2025-11-26 19:29:39] 2025-11-27 00:28:44,508 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 19:29:39] 2025-11-27 00:28:44,622 | INFO     | ***************************************
[2025-11-26 19:29:39] 2025-11-27 00:28:44,623 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 19:29:39] 2025-11-27 00:28:44,623 | INFO     | ***************************************
[2025-11-26 19:29:39] 2025-11-27 00:28:44,623 | INFO     | 
[2025-11-26 19:29:39] 2025-11-27 00:28:44,696 | INFO     | architecture information:
[2025-11-26 19:29:39] 2025-11-27 00:28:44,719 | INFO     | executing command: cat /etc/os-release
[2025-11-26 19:29:39] 2025-11-27 00:28:44,914 | INFO     | cat /etc/os-release:
[2025-11-26 19:29:39] NAME="CentOS Linux"
[2025-11-26 19:29:39] VERSION="7 (Core)"
[2025-11-26 19:29:39] ID="centos"
[2025-11-26 19:29:39] ID_LIKE="rhel fedora"
[2025-11-26 19:29:39] VERSION_ID="7"
[2025-11-26 19:29:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 19:29:39] ANSI_COLOR="0;31"
[2025-11-26 19:29:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 19:29:39] HOME_URL="https://www.centos.org/"
[2025-11-26 19:29:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 19:29:39] 
[2025-11-26 19:29:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 19:29:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 19:29:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 19:29:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 19:29:39] 
[2025-11-26 19:29:39] 2025-11-27 00:28:44,915 | INFO     | ***************************************
[2025-11-26 19:29:39] 2025-11-27 00:28:45,418 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-26 19:29:39] 2025-11-27 00:28:45,626 | INFO     | sufficient remaining disk space (48972693504 B)
[2025-11-26 19:29:39] 2025-11-27 00:28:45,626 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 19:29:39] 2025-11-27 00:28:45,626 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 19:29:39] 2025-11-27 00:28:45,627 | INFO     | update_server=False
[2025-11-26 19:29:39] 2025-11-27 00:28:45,627 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 19:29:39] 2025-11-27 00:28:45,658 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 19:29:39] 2025-11-27 00:28:45,667 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 19:29:39] 2025-11-27 00:28:45,668 | INFO     | aborting loop
[2025-11-26 19:29:39] 2025-11-27 00:28:45,677 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 19:29:39] 2025-11-27 00:28:45,819 | INFO     | all data control threads have been joined
[2025-11-26 19:29:39] 2025-11-27 00:28:46,633 | INFO     | [job] retrieve thread has finished
[2025-11-26 19:29:39] 2025-11-27 00:28:46,678 | INFO     | [job] job monitor thread has finished
[2025-11-26 19:29:39] 2025-11-27 00:28:46,679 | INFO     | all payload control threads have been joined
[2025-11-26 19:29:39] 2025-11-27 00:28:46,825 | INFO     | [data] control thread has finished
[2025-11-26 19:29:39] 2025-11-27 00:28:46,959 | INFO     | [job] validate thread has finished
[2025-11-26 19:29:39] 2025-11-27 00:28:47,001 | INFO     | [data] copytool_in thread has finished
[2025-11-26 19:29:39] 2025-11-27 00:28:47,026 | INFO     | all job control threads have been joined
[2025-11-26 19:29:39] 2025-11-27 00:28:47,362 | INFO     | [payload] validate_post thread has finished
[2025-11-26 19:29:39] 2025-11-27 00:28:47,382 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 19:29:39] 2025-11-27 00:28:47,482 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 19:29:39] 2025-11-27 00:28:47,491 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 19:29:39] 2025-11-27 00:28:47,500 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 19:29:39] 2025-11-27 00:28:47,591 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 19:29:39] 2025-11-27 00:28:47,684 | INFO     | [data] copytool_out thread has finished
[2025-11-26 19:29:39] 2025-11-27 00:28:47,685 | INFO     | [payload] control thread has finished
[2025-11-26 19:29:39] 2025-11-27 00:28:47,789 | INFO     | [payload] failed_post thread has finished
[2025-11-26 19:29:39] 2025-11-27 00:28:48,068 | INFO     | [job] control thread has finished
[2025-11-26 19:29:39] 2025-11-27 00:28:48,506 | INFO     | [job] queue monitor thread has finished
[2025-11-26 19:29:39] 2025-11-27 00:28:49,702 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 19:29:39] 2025-11-27 00:29:16,137 | INFO     | PID=165859 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 19:29:39] 2025-11-27 00:29:16,138 | INFO     | .. there are 8 such processes running
[2025-11-26 19:29:39] 2025-11-27 00:29:16,139 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 19:29:39] 2025-11-27 00:29:16,139 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 19:29:39] 2025-11-27 00:29:16,139 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 19:29:39] 2025-11-27 00:29:26,211 | INFO     | [monitor] cgroup control has ended
[2025-11-26 19:29:39] 2025-11-27 00:29:27,258 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140610648762176)>', '<ExcThread(monitor, started 140610149267200)>']
[2025-11-26 19:29:39] 2025-11-27 00:29:27,319 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 19:29:39] 2025-11-27 00:29:27,320 | INFO     | [monitor] control thread has ended
[2025-11-26 19:29:39] 2025-11-27 00:29:32,284 | INFO     | all workflow threads have been joined
[2025-11-26 19:29:39] 2025-11-27 00:29:32,285 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 19:29:39] 2025-11-27 00:29:32,285 | INFO     | traces error code: 0
[2025-11-26 19:29:39] 2025-11-27 00:29:32,285 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 19:29:39] 2025-11-27 00:29:36,273 [wrapper] ==== pilot stdout END ====
[2025-11-26 19:29:39] 2025-11-27 00:29:36,322 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 19:29:39] 2025-11-27 00:29:36,492 [wrapper] pilotpid: 165859
[2025-11-26 19:29:39] 2025-11-27 00:29:36,685 [wrapper] Pilot exit status: 0
[2025-11-26 19:29:39] 2025-11-27 00:29:37,094 [wrapper] pandaids: 6895355487
[2025-11-26 19:29:39] 2025-11-27 00:29:37,658 [wrapper] cleanup supervisor_pilot 4072435 165860
[2025-11-26 19:29:39] 2025-11-27 00:29:37,707 [wrapper] Test setup, not cleaning
[2025-11-26 19:29:39] 2025-11-27 00:29:37,753 [wrapper] apfmon messages muted
[2025-11-26 19:29:39] 2025-11-27 00:29:37,778 [wrapper] ==== wrapper stdout END ====
[2025-11-26 19:29:39] 2025-11-27 00:29:37,825 [wrapper] ==== wrapper stderr END ====
[2025-11-26 19:29:39]  *** Error codes and diagnostics ***
[2025-11-26 19:29:39]     "exeErrorCode": 0,
[2025-11-26 19:29:39]     "exeErrorDiag": "",
[2025-11-26 19:29:39]     "pilotErrorCode": 0,
[2025-11-26 19:29:39]     "pilotErrorDiag": "",
[2025-11-26 19:29:39]  *** Listing of results directory ***
[2025-11-26 19:29:39] total 1365840
[2025-11-26 19:29:39] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 02:37 queuedata.json
[2025-11-26 19:29:39] -rwx------. 1 boincer umatlas     36292 Nov 23 02:37 runpilot2-wrapper.sh
[2025-11-26 19:29:39] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 02:37 pilot3.tar.gz
[2025-11-26 19:29:39] -rw-r--r--. 1 boincer umatlas       100 Nov 25 00:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 19:29:39] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 00:51 run_atlas
[2025-11-26 19:29:39] -rw-r--r--. 1 boincer umatlas       105 Nov 25 00:51 job.xml
[2025-11-26 19:29:39] -rw-r--r--. 2 boincer umatlas 410997859 Nov 25 00:51 EVNT.47483658._000661.pool.root.1
[2025-11-26 19:29:39] -rw-r--r--. 2 boincer umatlas    590095 Nov 25 00:51 input.tar.gz
[2025-11-26 19:29:39] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:51 start_atlas.sh
[2025-11-26 19:29:39] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 00:51 shared
[2025-11-26 19:29:39] -rw-r--r--. 1 boincer umatlas         0 Nov 25 00:51 boinc_lockfile
[2025-11-26 19:29:39] -rw-r--r--. 1 boincer umatlas      2785 Nov 25 00:51 pandaJob.out
[2025-11-26 19:29:39] -rw-------. 1 boincer umatlas        57 Nov 25 00:51 setup.sh.local
[2025-11-26 19:29:39] -rw-------. 1 boincer umatlas    991801 Nov 25 00:51 agis_schedconf.cvmfs.json
[2025-11-26 19:29:39] drwx------. 5 boincer umatlas      4096 Nov 25 00:51 pilot3
[2025-11-26 19:29:39] -rw-r--r--. 1 boincer umatlas       534 Nov 26 19:05 boinc_task_state.xml
[2025-11-26 19:29:39] -rw-------. 1 boincer umatlas 938544878 Nov 26 19:24 HITS.47556137._006564.pool.root.1
[2025-11-26 19:29:39] -rw-------. 1 boincer umatlas      1059 Nov 26 19:26 memory_monitor_summary.json
[2025-11-26 19:29:39] -rw-------. 1 boincer umatlas   1516240 Nov 26 19:27 agis_ddmendpoints.agis.ALL.json
[2025-11-26 19:29:39] -rw-------. 1 boincer umatlas   3623183 Nov 26 19:27 log.47556137._006564.job.log.tgz.1
[2025-11-26 19:29:39] -rw-r--r--. 1 boincer umatlas      6661 Nov 26 19:27 init_data.xml
[2025-11-26 19:29:39] -rw-------. 1 boincer umatlas      8623 Nov 26 19:28 heartbeat.json
[2025-11-26 19:29:39] -rw-------. 1 boincer umatlas        95 Nov 26 19:29 pilot_heartbeat.json
[2025-11-26 19:29:39] -rw-------. 1 boincer umatlas      4822 Nov 26 19:29 pilotlog.txt
[2025-11-26 19:29:39] -rw-r--r--. 1 boincer umatlas        30 Nov 26 19:29 wrapper_checkpoint.txt
[2025-11-26 19:29:39] -rw-------. 1 boincer umatlas  18951900 Nov 26 19:29 log.47556137._006564.job.log.1
[2025-11-26 19:29:39] -rw-------. 1 boincer umatlas       353 Nov 26 19:29 output.list
[2025-11-26 19:29:39] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 19:29 boinc_mmap_file
[2025-11-26 19:29:39] -rw-r--r--. 1 boincer umatlas       620 Nov 26 19:29 runtime_log
[2025-11-26 19:29:39] -rw-------. 1 boincer umatlas  22599680 Nov 26 19:29 result.tar.gz
[2025-11-26 19:29:39] -rw-r--r--. 1 boincer umatlas      9346 Nov 26 19:29 runtime_log.err
[2025-11-26 19:29:39] -rw-------. 1 boincer umatlas       663 Nov 26 19:29 m5kNDmYqJh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmMjKKDmLZy66m.diag
[2025-11-26 19:29:39] -rw-r--r--. 1 boincer umatlas     21669 Nov 26 19:29 stderr.txt
[2025-11-26 19:29:59] HITS file was successfully produced:
[2025-11-26 19:30:00] -rw-------. 1 boincer umatlas 938544878 Nov 26 19:24 shared/HITS.pool.root.1
[2025-11-26 19:30:00]  *** Contents of shared directory: ***
[2025-11-26 19:30:00] total 1340592
[2025-11-26 19:30:00] -rw-r--r--. 2 boincer umatlas 410997859 Nov 25 00:51 ATLAS.root_0
[2025-11-26 19:30:00] -rw-r--r--. 2 boincer umatlas    590095 Nov 25 00:51 input.tar.gz
[2025-11-26 19:30:00] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:51 start_atlas.sh
[2025-11-26 19:30:00] -rw-------. 1 boincer umatlas 938544878 Nov 26 19:24 HITS.pool.root.1
[2025-11-26 19:30:00] -rw-------. 1 boincer umatlas  22599680 Nov 26 19:29 result.tar.gz
19:30:01 (162208): run_atlas exited; CPU time 335016.123038
19:30:01 (162208): called boinc_finish(0)

</stderr_txt>
]]>

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