Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:03:30 (948425): wrapper (7.7.26015): starting
00:03:30 (948425): wrapper: running run_atlas (--nthreads 12)
[2025-11-24 00:03:30] Arguments: --nthreads 12
[2025-11-24 00:03:30] Threads: 12
[2025-11-24 00:03:30] Checking for CVMFS
[2025-11-24 00:03:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 00:03:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 00:03:31] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 00:03:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 00:03:32] 2.13.3.0 11883 26590 379264 153233 3 381 18282651 32935936 33784 16776704 0 132841597 99.617 141881143 34485 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-24 00:03:32] CVMFS is ok
[2025-11-24 00:03:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 00:03:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 00:03:32] Further information can be found at the LHC@home message board.
[2025-11-24 00:03:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 00:03:32] Checking for apptainer binary...
[2025-11-24 00:03:32] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 00:03:32] Running /usr/bin/apptainer --version
[2025-11-24 00:03:32] apptainer version 1.4.4-1.el9
[2025-11-24 00:03:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 00:03:33] c6-12-29-2.aglt2.org
[2025-11-24 00:03:33] apptainer works
[2025-11-24 00:03:33] Set ATHENA_PROC_NUMBER=12
[2025-11-24 00:03:33] Set ATHENA_CORE_NUMBER=12
[2025-11-24 00:03:33] Starting ATLAS job with PandaID=6891555491
[2025-11-24 00:03:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 20:32:38]  *** The last 200 lines of the pilot log: ***
[2025-11-24 20:32:38] 2025-11-25 01:29:49,693 | INFO     | time since job start (73503s) is within the limit (172800.0s)
[2025-11-24 20:32:38] 2025-11-25 01:29:51,643 | INFO     | monitor loop #3824: job 0:6891555491 is in state 'finished'
[2025-11-24 20:32:38] 2025-11-25 01:29:51,643 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 20:32:38] 2025-11-25 01:29:51,700 | INFO     | time since job start (73505s) is within the limit (172800.0s)
[2025-11-24 20:32:38] 2025-11-25 01:29:53,719 | INFO     | time since job start (73507s) is within the limit (172800.0s)
[2025-11-24 20:32:38] 2025-11-25 01:29:54,150 | INFO     | monitor loop #3825: job 0:6891555491 is in state 'finished'
[2025-11-24 20:32:38] 2025-11-25 01:29:54,150 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 20:32:38] 2025-11-25 01:29:55,726 | INFO     | time since job start (73509s) is within the limit (172800.0s)
[2025-11-24 20:32:38] 2025-11-25 01:29:56,656 | INFO     | monitor loop #3826: job 0:6891555491 is in state 'finished'
[2025-11-24 20:32:38] 2025-11-25 01:29:56,656 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 20:32:38] 2025-11-25 01:29:57,755 | INFO     | time since job start (73511s) is within the limit (172800.0s)
[2025-11-24 20:32:38] 2025-11-25 01:29:59,183 | INFO     | monitor loop #3827: job 0:6891555491 is in state 'finished'
[2025-11-24 20:32:38] 2025-11-25 01:29:59,183 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 20:32:38] 2025-11-25 01:29:59,770 | INFO     | time since job start (73513s) is within the limit (172800.0s)
[2025-11-24 20:32:38] 2025-11-25 01:30:01,689 | INFO     | monitor loop #3828: job 0:6891555491 is in state 'finished'
[2025-11-24 20:32:38] 2025-11-25 01:30:01,689 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 20:32:38] 2025-11-25 01:30:01,787 | INFO     | time since job start (73515s) is within the limit (172800.0s)
[2025-11-24 20:32:38] 2025-11-25 01:30:02,150 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-24 20:32:38] 2025-11-25 01:30:02,177 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2715.8763749999994
[2025-11-24 20:32:38] 2025-11-25 01:30:02,194 | INFO     | using path: /tmp/boinchome/slots/6/PanDA_Pilot-6891555491/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 20:32:38] 2025-11-25 01:30:02,197 | INFO     | extracted standard info from prmon json
[2025-11-24 20:32:38] 2025-11-25 01:30:02,197 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 20:32:38] 2025-11-25 01:30:02,197 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 20:32:38] 2025-11-25 01:30:02,217 | INFO     | fitting pss+swap vs Time
[2025-11-24 20:32:38] 2025-11-25 01:30:02,219 | INFO     | sum of square deviations: 538386127216.2033
[2025-11-24 20:32:38] 2025-11-25 01:30:02,247 | INFO     | sum of deviations: 4763565996480.03
[2025-11-24 20:32:38] 2025-11-25 01:30:02,247 | INFO     | mean x: 1763997482.4276206
[2025-11-24 20:32:38] 2025-11-25 01:30:02,248 | INFO     | mean y: 3459321.391014975
[2025-11-24 20:32:38] 2025-11-25 01:30:02,248 | INFO     | intersect: -15604146447.756485
[2025-11-24 20:32:38] 2025-11-25 01:30:02,249 | INFO     | chi2: 18.825662299985304
[2025-11-24 20:32:38] 2025-11-25 01:30:02,251 | INFO     | sum of square deviations: 531696732258.07513
[2025-11-24 20:32:38] 2025-11-25 01:30:02,287 | INFO     | sum of deviations: 5271747539339.988
[2025-11-24 20:32:38] 2025-11-25 01:30:02,287 | INFO     | mean x: 1763997329.9598997
[2025-11-24 20:32:38] 2025-11-25 01:30:02,287 | INFO     | mean y: 3470902.4995822893
[2025-11-24 20:32:38] 2025-11-25 01:30:02,287 | INFO     | intersect: -17486477820.948074
[2025-11-24 20:32:38] 2025-11-25 01:30:02,311 | INFO     | chi2: 15.287346849254204
[2025-11-24 20:32:38] 2025-11-25 01:30:02,311 | INFO     | current chi2=15.287346849254204 (change=18.795171157053325 %)
[2025-11-24 20:32:38] 2025-11-25 01:30:02,311 | INFO     | right removable region: 1196
[2025-11-24 20:32:38] 2025-11-25 01:30:02,313 | INFO     | sum of square deviations: 531690992753.1545
[2025-11-24 20:32:38] 2025-11-25 01:30:02,397 | INFO     | sum of deviations: 4185806708878.784
[2025-11-24 20:32:38] 2025-11-25 01:30:02,398 | INFO     | mean x: 1763997634.960735
[2025-11-24 20:32:38] 2025-11-25 01:30:02,398 | INFO     | mean y: 3472481.6123642437
[2025-11-24 20:32:38] 2025-11-25 01:30:02,398 | INFO     | intersect: -13883829044.09351
[2025-11-24 20:32:38] 2025-11-25 01:30:02,409 | INFO     | chi2: 14.704540001835182
[2025-11-24 20:32:38] 2025-11-25 01:30:02,409 | INFO     | current chi2=14.704540001835182 (change=21.890981748638605 %)
[2025-11-24 20:32:38] 2025-11-25 01:30:02,409 | INFO     | left removable region: 10
[2025-11-24 20:32:38] 2025-11-25 01:30:02,411 | INFO     | sum of square deviations: 517164249697.1516
[2025-11-24 20:32:38] 2025-11-25 01:30:02,490 | INFO     | sum of deviations: 4286183295122.55
[2025-11-24 20:32:38] 2025-11-25 01:30:02,529 | INFO     | mean x: 1763997604.533727
[2025-11-24 20:32:38] 2025-11-25 01:30:02,529 | INFO     | mean y: 3498154.3988195616
[2025-11-24 20:32:38] 2025-11-25 01:30:02,529 | INFO     | intersect: -14616261563.362463
[2025-11-24 20:32:38] 2025-11-25 01:30:02,531 | INFO     | chi2: 7.414123636290922
[2025-11-24 20:32:38] 2025-11-25 01:30:02,531 | INFO     | current memory leak: 8.29 B/s (using 1186 data points, chi2=7.41)
[2025-11-24 20:32:38] 2025-11-25 01:30:02,539 | INFO     | could have reported an average CPU frequency of 2628 MHz (43 samples)
[2025-11-24 20:32:38] 2025-11-25 01:30:02,539 | INFO     | ..............................
[2025-11-24 20:32:38] 2025-11-25 01:30:02,539 | INFO     | . Timing measurements:
[2025-11-24 20:32:38] 2025-11-25 01:30:02,539 | INFO     | . get job = 0 s
[2025-11-24 20:32:38] 2025-11-25 01:30:02,539 | INFO     | . initial setup = 5 s
[2025-11-24 20:32:38] 2025-11-25 01:30:02,539 | INFO     | . payload setup = 55 s
[2025-11-24 20:32:38] 2025-11-25 01:30:02,539 | INFO     | . stage-in = 0 s
[2025-11-24 20:32:38] 2025-11-25 01:30:02,540 | INFO     | . payload execution = 73342 s
[2025-11-24 20:32:38] 2025-11-25 01:30:02,546 | INFO     | . stage-out = 9 s
[2025-11-24 20:32:38] 2025-11-25 01:30:02,546 | INFO     | . log creation = 3 s
[2025-11-24 20:32:38] 2025-11-25 01:30:02,546 | INFO     | ..............................
[2025-11-24 20:32:38] 2025-11-25 01:30:02,768 | INFO     | 
[2025-11-24 20:32:38] 2025-11-25 01:30:02,768 | INFO     | job summary report
[2025-11-24 20:32:38] 2025-11-25 01:30:02,768 | INFO     | --------------------------------------------------
[2025-11-24 20:32:38] 2025-11-25 01:30:02,768 | INFO     | PanDA job id: 6891555491
[2025-11-24 20:32:38] 2025-11-25 01:30:02,768 | INFO     | task id: 47493068
[2025-11-24 20:32:38] 2025-11-25 01:30:02,768 | INFO     | errors: (none)
[2025-11-24 20:32:38] 2025-11-25 01:30:02,768 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 20:32:38] 2025-11-25 01:30:02,768 | INFO     | pilot state: finished 
[2025-11-24 20:32:38] 2025-11-25 01:30:02,768 | INFO     | transexitcode: 0
[2025-11-24 20:32:38] 2025-11-25 01:30:02,769 | INFO     | exeerrorcode: 0
[2025-11-24 20:32:38] 2025-11-25 01:30:02,769 | INFO     | exeerrordiag: 
[2025-11-24 20:32:38] 2025-11-25 01:30:02,769 | INFO     | exitcode: 0
[2025-11-24 20:32:38] 2025-11-25 01:30:02,769 | INFO     | exitmsg: OK
[2025-11-24 20:32:38] 2025-11-25 01:30:02,769 | INFO     | cpuconsumptiontime: 267825 s
[2025-11-24 20:32:38] 2025-11-25 01:30:02,769 | INFO     | nevents: 1000
[2025-11-24 20:32:38] 2025-11-25 01:30:02,769 | INFO     | neventsw: 0
[2025-11-24 20:32:38] 2025-11-25 01:30:02,769 | INFO     | pid: 982013
[2025-11-24 20:32:38] 2025-11-25 01:30:02,769 | INFO     | pgrp: 982013
[2025-11-24 20:32:38] 2025-11-25 01:30:02,769 | INFO     | corecount: 12
[2025-11-24 20:32:38] 2025-11-25 01:30:02,769 | INFO     | event service: False
[2025-11-24 20:32:38] 2025-11-25 01:30:02,769 | INFO     | sizes: {0: 2298621, 2: 2298820, 3: 2298820, 14: 2298848, 25: 2298876, 35: 2299166, 36: 2299322, 73398: 2357302, 73409: 2367087, 73412: 2367143, 73445: 2367389}
[2025-11-24 20:32:38] 2025-11-25 01:30:02,769 | INFO     | --------------------------------------------------
[2025-11-24 20:32:38] 2025-11-25 01:30:02,769 | INFO     | 
[2025-11-24 20:32:38] 2025-11-25 01:30:02,770 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2025-11-24 20:32:38] 2025-11-25 01:30:02,818 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 20:32:38] 2025-11-25 01:30:02,818 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 20:32:38] 2025-11-25 01:30:02,818 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 20:32:38] 2025-11-25 01:30:02,818 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 20:32:38] 2025-11-25 01:30:02,819 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 20:32:38] 2025-11-25 01:30:02,819 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 20:32:38] 2025-11-25 01:30:02,819 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 20:32:38] 2025-11-25 01:30:02,819 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 20:32:38] 2025-11-25 01:30:02,819 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 20:32:38] 2025-11-25 01:30:02,819 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 20:32:38] 2025-11-25 01:30:02,819 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 20:32:38] 2025-11-25 01:30:02,819 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 20:32:38] 2025-11-25 01:30:02,819 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 20:32:38] 2025-11-25 01:30:02,819 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 20:32:38] 2025-11-25 01:30:02,819 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 20:32:38] 2025-11-25 01:30:02,820 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 20:32:38] 2025-11-25 01:30:02,820 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 20:32:38] 2025-11-25 01:30:02,820 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 20:32:38] 2025-11-25 01:30:02,820 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 20:32:38] 2025-11-25 01:30:02,820 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 20:32:38] 2025-11-25 01:30:02,820 | INFO     | job 6891555491 has completed (purged errors)
[2025-11-24 20:32:38] 2025-11-25 01:30:02,820 | INFO     | overall cleanup function is called
[2025-11-24 20:32:38] 2025-11-25 01:30:03,858 | INFO     | --- collectZombieJob: --- 10, [982013]
[2025-11-24 20:32:38] 2025-11-25 01:30:03,858 | INFO     | zombie collector waiting for pid 982013
[2025-11-24 20:32:38] 2025-11-25 01:30:03,858 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 20:32:38] 2025-11-25 01:30:03,858 | INFO     | collected zombie processes
[2025-11-24 20:32:38] 2025-11-25 01:30:03,858 | INFO     | will attempt to kill all subprocesses of pid=982013
[2025-11-24 20:32:38] 2025-11-25 01:30:05,686 | INFO     | process IDs to be killed: [982013] (in reverse order)
[2025-11-24 20:32:38] 2025-11-25 01:30:06,603 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 20:32:38] 2025-11-25 01:30:06,603 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 20:32:38] 2025-11-25 01:30:06,738 | INFO     | did not find any defunct processes belonging to 982013
[2025-11-24 20:32:38] 2025-11-25 01:30:06,867 | INFO     | did not find any defunct processes belonging to 982013
[2025-11-24 20:32:38] 2025-11-25 01:30:06,893 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 20:32:38] 2025-11-25 01:30:06,894 | INFO     | ready for new job
[2025-11-24 20:32:38] 2025-11-25 01:30:06,894 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 20:32:38] 2025-11-25 01:30:06,923 | INFO     | ***************************************
[2025-11-24 20:32:38] 2025-11-25 01:30:06,923 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 20:32:38] 2025-11-25 01:30:06,923 | INFO     | ***************************************
[2025-11-24 20:32:38] 2025-11-25 01:30:06,923 | INFO     | 
[2025-11-24 20:32:38] 2025-11-25 01:30:06,950 | INFO     | architecture information:
[2025-11-24 20:32:38] 2025-11-25 01:30:07,002 | INFO     | executing command: cat /etc/os-release
[2025-11-24 20:32:38] 2025-11-25 01:30:07,070 | INFO     | cat /etc/os-release:
[2025-11-24 20:32:38] NAME="CentOS Linux"
[2025-11-24 20:32:38] VERSION="7 (Core)"
[2025-11-24 20:32:38] ID="centos"
[2025-11-24 20:32:38] ID_LIKE="rhel fedora"
[2025-11-24 20:32:38] VERSION_ID="7"
[2025-11-24 20:32:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 20:32:38] ANSI_COLOR="0;31"
[2025-11-24 20:32:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 20:32:38] HOME_URL="https://www.centos.org/"
[2025-11-24 20:32:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 20:32:38] 
[2025-11-24 20:32:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 20:32:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 20:32:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 20:32:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 20:32:38] 
[2025-11-24 20:32:38] 2025-11-25 01:30:07,070 | INFO     | ***************************************
[2025-11-24 20:32:38] 2025-11-25 01:30:07,598 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2025-11-24 20:32:38] 2025-11-25 01:30:07,773 | INFO     | sufficient remaining disk space (81562435584 B)
[2025-11-24 20:32:38] 2025-11-25 01:30:07,773 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 20:32:38] 2025-11-25 01:30:07,774 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 20:32:38] 2025-11-25 01:30:07,774 | INFO     | update_server=False
[2025-11-24 20:32:38] 2025-11-25 01:30:07,774 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 20:32:38] 2025-11-25 01:30:07,775 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 20:32:38] 2025-11-25 01:30:07,775 | INFO     | aborting loop
[2025-11-24 20:32:38] 2025-11-25 01:30:07,781 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 20:32:38] 2025-11-25 01:30:07,781 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 20:32:38] 2025-11-25 01:30:07,781 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 20:32:38] 2025-11-25 01:30:08,067 | INFO     | all job control threads have been joined
[2025-11-24 20:32:38] 2025-11-25 01:30:08,492 | INFO     | all payload control threads have been joined
[2025-11-24 20:32:38] 2025-11-25 01:30:08,626 | INFO     | all data control threads have been joined
[2025-11-24 20:32:38] 2025-11-25 01:30:08,782 | INFO     | [job] retrieve thread has finished
[2025-11-24 20:32:38] 2025-11-25 01:30:08,784 | INFO     | [job] job monitor thread has finished
[2025-11-24 20:32:38] 2025-11-25 01:30:08,807 | INFO     | [job] queue monitor thread has finished
[2025-11-24 20:32:38] 2025-11-25 01:30:08,827 | INFO     | [job] validate thread has finished
[2025-11-24 20:32:38] 2025-11-25 01:30:08,898 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 20:32:38] 2025-11-25 01:30:08,973 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 20:32:38] 2025-11-25 01:30:09,073 | INFO     | [job] control thread has finished
[2025-11-24 20:32:38] 2025-11-25 01:30:09,332 | INFO     | [data] copytool_in thread has finished
[2025-11-24 20:32:38] 2025-11-25 01:30:09,404 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 20:32:38] 2025-11-25 01:30:09,404 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 20:32:38] 2025-11-25 01:30:09,497 | INFO     | [payload] control thread has finished
[2025-11-24 20:32:38] 2025-11-25 01:30:09,645 | INFO     | [data] control thread has finished
[2025-11-24 20:32:38] 2025-11-25 01:30:09,653 | INFO     | [payload] validate_post thread has finished
[2025-11-24 20:32:38] 2025-11-25 01:30:09,809 | INFO     | [data] copytool_out thread has finished
[2025-11-24 20:32:38] 2025-11-25 01:30:09,840 | INFO     | [payload] failed_post thread has finished
[2025-11-24 20:32:38] 2025-11-25 01:30:11,825 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 20:32:38] 2025-11-25 01:30:37,254 | INFO     | PID=958625 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-24 20:32:38] 2025-11-25 01:30:37,255 | INFO     | .. there are 61 such processes running
[2025-11-24 20:32:38] 2025-11-25 01:30:37,255 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 20:32:38] 2025-11-25 01:30:37,255 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 20:32:38] 2025-11-25 01:30:37,255 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 20:32:38] 2025-11-25 01:31:03,766 | INFO     | [monitor] cgroup control has ended
[2025-11-24 20:32:38] 2025-11-25 01:31:04,026 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140524283520832)>', '<ExcThread(monitor, started 140523788551936)>']
[2025-11-24 20:32:38] 2025-11-25 01:31:04,476 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 20:32:38] 2025-11-25 01:31:04,476 | INFO     | [monitor] control thread has ended
[2025-11-24 20:32:38] 2025-11-25 01:31:09,051 | INFO     | all workflow threads have been joined
[2025-11-24 20:32:38] 2025-11-25 01:31:09,053 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 20:32:38] 2025-11-25 01:31:09,053 | INFO     | traces error code: 0
[2025-11-24 20:32:38] 2025-11-25 01:31:09,053 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 20:32:38] 2025-11-25 01:31:09,815 [wrapper] ==== pilot stdout END ====
[2025-11-24 20:32:38] 2025-11-25 01:31:09,849 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 20:32:38] 2025-11-25 01:31:09,861 [wrapper] pilotpid: 958625
[2025-11-24 20:32:38] 2025-11-25 01:31:09,911 [wrapper] Pilot exit status: 0
[2025-11-24 20:32:38] 2025-11-25 01:31:09,990 [wrapper] pandaids: 6891555491
[2025-11-24 20:32:38] 2025-11-25 01:31:10,142 [wrapper] cleanup supervisor_pilot 1740500 958626
[2025-11-24 20:32:38] 2025-11-25 01:31:10,150 [wrapper] Test setup, not cleaning
[2025-11-24 20:32:38] 2025-11-25 01:31:10,161 [wrapper] apfmon messages muted
[2025-11-24 20:32:38] 2025-11-25 01:31:10,168 [wrapper] ==== wrapper stdout END ====
[2025-11-24 20:32:38] 2025-11-25 01:31:10,171 [wrapper] ==== wrapper stderr END ====
[2025-11-24 20:32:38]  *** Error codes and diagnostics ***
[2025-11-24 20:32:38]     "exeErrorCode": 0,
[2025-11-24 20:32:38]     "exeErrorDiag": "",
[2025-11-24 20:32:38]     "pilotErrorCode": 0,
[2025-11-24 20:32:38]     "pilotErrorDiag": "",
[2025-11-24 20:32:38]  *** Listing of results directory ***
[2025-11-24 20:32:38] total 1332020
[2025-11-24 20:32:38] -rw-r--r--. 1 boincer umatlas    576529 Nov 18 10:15 pilot3.tar.gz
[2025-11-24 20:32:38] -rw-r--r--. 1 boincer umatlas      5112 Nov 18 10:20 queuedata.json
[2025-11-24 20:32:38] -rwx------. 1 boincer umatlas     36292 Nov 18 10:20 runpilot2-wrapper.sh
[2025-11-24 20:32:38] -rw-r--r--. 1 boincer umatlas       100 Nov 24 00:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 20:32:38] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 00:03 run_atlas
[2025-11-24 20:32:38] -rw-r--r--. 1 boincer umatlas       105 Nov 24 00:03 job.xml
[2025-11-24 20:32:38] -rw-r--r--. 2 boincer umatlas 409102531 Nov 24 00:03 EVNT.47493065._000027.pool.root.1
[2025-11-24 20:32:38] -rw-r--r--. 2 boincer umatlas     15120 Nov 24 00:03 start_atlas.sh
[2025-11-24 20:32:38] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 00:03 shared
[2025-11-24 20:32:38] -rw-r--r--. 2 boincer umatlas    590098 Nov 24 00:03 input.tar.gz
[2025-11-24 20:32:38] -rw-r--r--. 1 boincer umatlas         0 Nov 24 00:03 boinc_lockfile
[2025-11-24 20:32:38] -rw-r--r--. 1 boincer umatlas      2771 Nov 24 00:03 pandaJob.out
[2025-11-24 20:32:38] -rw-------. 1 boincer umatlas    989786 Nov 24 00:04 agis_schedconf.cvmfs.json
[2025-11-24 20:32:38] drwx------. 5 boincer umatlas      4096 Nov 24 00:04 pilot3
[2025-11-24 20:32:38] -rw-r--r--. 1 boincer umatlas       533 Nov 24 20:05 boinc_task_state.xml
[2025-11-24 20:32:38] -rw-------. 1 boincer umatlas 928561439 Nov 24 20:27 HITS.47493068._000262.pool.root.1
[2025-11-24 20:32:38] -rw-------. 1 boincer umatlas      1059 Nov 24 20:29 memory_monitor_summary.json
[2025-11-24 20:32:38] -rw-------. 1 boincer umatlas   1516227 Nov 24 20:29 agis_ddmendpoints.agis.ALL.json
[2025-11-24 20:32:38] -rw-------. 1 boincer umatlas   2691737 Nov 24 20:29 log.47493068._000262.job.log.tgz.1
[2025-11-24 20:32:38] -rw-------. 1 boincer umatlas        95 Nov 24 20:29 pilot_heartbeat.json
[2025-11-24 20:32:38] -rw-------. 1 boincer umatlas      8627 Nov 24 20:30 heartbeat.json
[2025-11-24 20:32:38] -rw-------. 1 boincer umatlas      4823 Nov 24 20:31 pilotlog.txt
[2025-11-24 20:32:38] -rw-------. 1 boincer umatlas   8512387 Nov 24 20:31 log.47493068._000262.job.log.1
[2025-11-24 20:32:38] -rw-------. 1 boincer umatlas       353 Nov 24 20:31 output.list
[2025-11-24 20:32:38] -rw-r--r--. 1 boincer umatlas       620 Nov 24 20:31 runtime_log
[2025-11-24 20:32:38] -rw-------. 1 boincer umatlas  11223040 Nov 24 20:31 result.tar.gz
[2025-11-24 20:32:38] -rw-r--r--. 1 boincer umatlas      8716 Nov 24 20:31 runtime_log.err
[2025-11-24 20:32:38] -rw-------. 1 boincer umatlas       662 Nov 24 20:31 1hgMDmYgcf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmRHFKDmpads2m.diag
[2025-11-24 20:32:38] -rw-r--r--. 1 boincer umatlas      6882 Nov 24 20:31 init_data.xml
[2025-11-24 20:32:38] -rw-r--r--. 1 boincer umatlas        29 Nov 24 20:32 wrapper_checkpoint.txt
[2025-11-24 20:32:38] -rw-r--r--. 1 boincer umatlas      8192 Nov 24 20:32 boinc_mmap_file
[2025-11-24 20:32:38] -rw-r--r--. 1 boincer umatlas     21811 Nov 24 20:32 stderr.txt
[2025-11-24 20:32:38] HITS file was successfully produced:
[2025-11-24 20:32:38] -rw-------. 1 boincer umatlas 928561439 Nov 24 20:27 shared/HITS.pool.root.1
[2025-11-24 20:32:38]  *** Contents of shared directory: ***
[2025-11-24 20:32:38] total 1317880
[2025-11-24 20:32:38] -rw-r--r--. 2 boincer umatlas 409102531 Nov 24 00:03 ATLAS.root_0
[2025-11-24 20:32:38] -rw-r--r--. 2 boincer umatlas     15120 Nov 24 00:03 start_atlas.sh
[2025-11-24 20:32:38] -rw-r--r--. 2 boincer umatlas    590098 Nov 24 00:03 input.tar.gz
[2025-11-24 20:32:38] -rw-------. 1 boincer umatlas 928561439 Nov 24 20:27 HITS.pool.root.1
[2025-11-24 20:32:38] -rw-------. 1 boincer umatlas  11223040 Nov 24 20:31 result.tar.gz
20:32:41 (948425): run_atlas exited; CPU time 270324.442491
20:32:41 (948425): called boinc_finish(0)

</stderr_txt>
]]>

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