Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:07:42 (7203): wrapper (7.7.26015): starting
17:07:42 (7203): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 17:07:42] Arguments: --nthreads 8
[2025-11-26 17:07:42] Threads: 8
[2025-11-26 17:07:42] Checking for CVMFS
[2025-11-26 17:07:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 17:07:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 17:07:44] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 17:07:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 17:07:45] 2.11.2.0 23867 285443 138120 153326 2 85 21627777 25165824 1288 130560 68 138590910 99.881 80779425 2849 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-26 17:07:45] CVMFS is ok
[2025-11-26 17:07:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 17:07:45] Checking for apptainer binary...
[2025-11-26 17:07:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 17:07:45] Running /usr/bin/apptainer --version
[2025-11-26 17:07:45] apptainer version 1.3.2-1.el7
[2025-11-26 17:07:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 17:07:51] cg-vwn394.simple-grid.lan
[2025-11-26 17:07:51] apptainer works
[2025-11-26 17:07:51] Set ATHENA_PROC_NUMBER=8
[2025-11-26 17:07:51] Set ATHENA_CORE_NUMBER=8
[2025-11-26 17:07:51] Starting ATLAS job with PandaID=6894264776
[2025-11-26 17:07:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 16:13:31]  *** The last 200 lines of the pilot log: ***
[2025-11-27 16:13:31] 2025-11-27 15:12:28,571 | INFO     | monitor loop #5571: job 0:6894264776 is in state 'finished'
[2025-11-27 16:13:31] 2025-11-27 15:12:28,571 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 16:13:31] 2025-11-27 15:12:29,157 | INFO     | time since job start (82833s) is within the limit (172800.0s)
[2025-11-27 16:13:31] 2025-11-27 15:12:31,076 | INFO     | monitor loop #5572: job 0:6894264776 is in state 'finished'
[2025-11-27 16:13:31] 2025-11-27 15:12:31,076 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 16:13:31] 2025-11-27 15:12:31,164 | INFO     | time since job start (82835s) is within the limit (172800.0s)
[2025-11-27 16:13:31] 2025-11-27 15:12:33,171 | INFO     | time since job start (82837s) is within the limit (172800.0s)
[2025-11-27 16:13:31] 2025-11-27 15:12:33,584 | INFO     | monitor loop #5573: job 0:6894264776 is in state 'finished'
[2025-11-27 16:13:31] 2025-11-27 15:12:33,584 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 16:13:31] 2025-11-27 15:12:34,362 | INFO     | PID=10992 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 16:13:31] 2025-11-27 15:12:34,363 | INFO     | .. there are 9 such processes running
[2025-11-27 16:13:31] 2025-11-27 15:12:35,371 | INFO     | time since job start (82839s) is within the limit (172800.0s)
[2025-11-27 16:13:31] 2025-11-27 15:12:36,089 | INFO     | monitor loop #5574: job 0:6894264776 is in state 'finished'
[2025-11-27 16:13:31] 2025-11-27 15:12:36,089 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 16:13:31] 2025-11-27 15:12:37,382 | INFO     | time since job start (82841s) is within the limit (172800.0s)
[2025-11-27 16:13:31] 2025-11-27 15:12:38,157 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 16:13:31] 2025-11-27 15:12:38,158 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-27 16:13:31] 2025-11-27 15:12:38,160 | INFO     | using path: /var/lib/boinc/slots/9/PanDA_Pilot-6894264776/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 16:13:31] 2025-11-27 15:12:38,161 | INFO     | extracted standard info from prmon json
[2025-11-27 16:13:31] 2025-11-27 15:12:38,161 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 16:13:31] 2025-11-27 15:12:38,161 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 16:13:31] 2025-11-27 15:12:38,201 | INFO     | fitting pss+swap vs Time
[2025-11-27 16:13:31] 2025-11-27 15:12:38,203 | INFO     | sum of square deviations: 761227042338.5869
[2025-11-27 16:13:31] 2025-11-27 15:12:38,289 | INFO     | sum of deviations: 2948229066539.3877
[2025-11-27 16:13:31] 2025-11-27 15:12:38,290 | INFO     | mean x: 1764215132.0741289
[2025-11-27 16:13:31] 2025-11-27 15:12:38,290 | INFO     | mean y: 2835262.206078577
[2025-11-27 16:13:31] 2025-11-27 15:12:38,290 | INFO     | intersect: -6829962369.405221
[2025-11-27 16:13:31] 2025-11-27 15:12:38,292 | INFO     | chi2: 21.169318533180313
[2025-11-27 16:13:31] 2025-11-27 15:12:38,294 | INFO     | sum of square deviations: 752794470347.7969
[2025-11-27 16:13:31] 2025-11-27 15:12:38,370 | INFO     | sum of deviations: 3400645307909.5474
[2025-11-27 16:13:31] 2025-11-27 15:12:38,370 | INFO     | mean x: 1764214979.578125
[2025-11-27 16:13:31] 2025-11-27 15:12:38,370 | INFO     | mean y: 2843442.6852678573
[2025-11-27 16:13:31] 2025-11-27 15:12:38,370 | INFO     | intersect: -7966754673.085014
[2025-11-27 16:13:31] 2025-11-27 15:12:38,372 | INFO     | chi2: 17.86894628271647
[2025-11-27 16:13:31] 2025-11-27 15:12:38,372 | INFO     | current chi2=17.86894628271647 (change=15.59035660638256 %)
[2025-11-27 16:13:31] 2025-11-27 15:12:38,372 | INFO     | right removable region: 1343
[2025-11-27 16:13:31] 2025-11-27 15:12:38,374 | INFO     | sum of square deviations: 752793586457.7969
[2025-11-27 16:13:31] 2025-11-27 15:12:38,439 | INFO     | sum of deviations: 2392675917721.188
[2025-11-27 16:13:31] 2025-11-27 15:12:38,439 | INFO     | mean x: 1764215284.578125
[2025-11-27 16:13:31] 2025-11-27 15:12:38,439 | INFO     | mean y: 2845307.2790178573
[2025-11-27 16:13:31] 2025-11-27 15:12:38,439 | INFO     | intersect: -5604529012.882463
[2025-11-27 16:13:31] 2025-11-27 15:12:38,441 | INFO     | chi2: 16.62998893619208
[2025-11-27 16:13:31] 2025-11-27 15:12:38,441 | INFO     | current chi2=16.62998893619208 (change=21.442965156735625 %)
[2025-11-27 16:13:31] 2025-11-27 15:12:38,441 | INFO     | left removable region: 10
[2025-11-27 16:13:31] 2025-11-27 15:12:38,443 | INFO     | sum of square deviations: 734460761795.9056
[2025-11-27 16:13:31] 2025-11-27 15:12:38,496 | INFO     | sum of deviations: 2497600015831.181
[2025-11-27 16:13:31] 2025-11-27 15:12:38,496 | INFO     | mean x: 1764215254.0870218
[2025-11-27 16:13:31] 2025-11-27 15:12:38,496 | INFO     | mean y: 2863626.912228057
[2025-11-27 16:13:31] 2025-11-27 15:12:38,497 | INFO     | intersect: -5996509349.478028
[2025-11-27 16:13:31] 2025-11-27 15:12:38,498 | INFO     | chi2: 9.657827336925651
[2025-11-27 16:13:31] 2025-11-27 15:12:38,499 | INFO     | current memory leak: 3.40 B/s (using 1333 data points, chi2=9.66)
[2025-11-27 16:13:31] 2025-11-27 15:12:38,500 | INFO     | could have reported an average CPU frequency of 1999 MHz (46 samples)
[2025-11-27 16:13:31] 2025-11-27 15:12:38,501 | INFO     | ..............................
[2025-11-27 16:13:31] 2025-11-27 15:12:38,501 | INFO     | . Timing measurements:
[2025-11-27 16:13:31] 2025-11-27 15:12:38,501 | INFO     | . get job = 0 s
[2025-11-27 16:13:31] 2025-11-27 15:12:38,501 | INFO     | . initial setup = 8 s
[2025-11-27 16:13:31] 2025-11-27 15:12:38,501 | INFO     | . payload setup = 142 s
[2025-11-27 16:13:31] 2025-11-27 15:12:38,501 | INFO     | . stage-in = 0 s
[2025-11-27 16:13:31] 2025-11-27 15:12:38,501 | INFO     | . payload execution = 82408 s
[2025-11-27 16:13:31] 2025-11-27 15:12:38,501 | INFO     | . stage-out = 4 s
[2025-11-27 16:13:31] 2025-11-27 15:12:38,501 | INFO     | . log creation = 1 s
[2025-11-27 16:13:31] 2025-11-27 15:12:38,501 | INFO     | ..............................
[2025-11-27 16:13:31] 2025-11-27 15:12:38,646 | INFO     | 
[2025-11-27 16:13:31] 2025-11-27 15:12:38,646 | INFO     | job summary report
[2025-11-27 16:13:31] 2025-11-27 15:12:38,646 | INFO     | --------------------------------------------------
[2025-11-27 16:13:31] 2025-11-27 15:12:38,647 | INFO     | PanDA job id: 6894264776
[2025-11-27 16:13:31] 2025-11-27 15:12:38,647 | INFO     | task id: 47533967
[2025-11-27 16:13:31] 2025-11-27 15:12:38,647 | INFO     | errors: (none)
[2025-11-27 16:13:31] 2025-11-27 15:12:38,647 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 16:13:31] 2025-11-27 15:12:38,647 | INFO     | pilot state: finished 
[2025-11-27 16:13:31] 2025-11-27 15:12:38,647 | INFO     | transexitcode: 0
[2025-11-27 16:13:31] 2025-11-27 15:12:38,647 | INFO     | exeerrorcode: 0
[2025-11-27 16:13:31] 2025-11-27 15:12:38,647 | INFO     | exeerrordiag: 
[2025-11-27 16:13:31] 2025-11-27 15:12:38,647 | INFO     | exitcode: 0
[2025-11-27 16:13:31] 2025-11-27 15:12:38,647 | INFO     | exitmsg: OK
[2025-11-27 16:13:31] 2025-11-27 15:12:38,647 | INFO     | cpuconsumptiontime: 311584 s
[2025-11-27 16:13:31] 2025-11-27 15:12:38,647 | INFO     | nevents: 1000
[2025-11-27 16:13:31] 2025-11-27 15:12:38,648 | INFO     | neventsw: 0
[2025-11-27 16:13:31] 2025-11-27 15:12:38,648 | INFO     | pid: 17549
[2025-11-27 16:13:31] 2025-11-27 15:12:38,648 | INFO     | pgrp: 17549
[2025-11-27 16:13:31] 2025-11-27 15:12:38,648 | INFO     | corecount: 8
[2025-11-27 16:13:31] 2025-11-27 15:12:38,648 | INFO     | event service: False
[2025-11-27 16:13:31] 2025-11-27 15:12:38,648 | INFO     | sizes: {0: 2284088, 1: 2284343, 2: 2284343, 12: 2284371, 23: 2284399, 34: 2284427, 44: 2284583, 55: 2284611, 66: 2284639, 77: 2284667, 87: 2284723, 96: 2285293, 98
[2025-11-27 16:13:31] 2025-11-27 15:12:38,648 | INFO     | --------------------------------------------------
[2025-11-27 16:13:31] 2025-11-27 15:12:38,648 | INFO     | 
[2025-11-27 16:13:31] 2025-11-27 15:12:38,648 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2025-11-27 16:13:31] 2025-11-27 15:12:39,200 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 16:13:31] 2025-11-27 15:12:39,200 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 16:13:31] 2025-11-27 15:12:39,200 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 16:13:31] 2025-11-27 15:12:39,200 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 16:13:31] 2025-11-27 15:12:39,200 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 16:13:31] 2025-11-27 15:12:39,200 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 16:13:31] 2025-11-27 15:12:39,200 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 16:13:31] 2025-11-27 15:12:39,200 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 16:13:31] 2025-11-27 15:12:39,200 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 16:13:31] 2025-11-27 15:12:39,201 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 16:13:31] 2025-11-27 15:12:39,201 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 16:13:31] 2025-11-27 15:12:39,201 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 16:13:31] 2025-11-27 15:12:39,201 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 16:13:31] 2025-11-27 15:12:39,201 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 16:13:31] 2025-11-27 15:12:39,201 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 16:13:31] 2025-11-27 15:12:39,201 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 16:13:31] 2025-11-27 15:12:39,201 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 16:13:31] 2025-11-27 15:12:39,201 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 16:13:31] 2025-11-27 15:12:39,201 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 16:13:31] 2025-11-27 15:12:39,201 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 16:13:31] 2025-11-27 15:12:39,202 | INFO     | job 6894264776 has completed (purged errors)
[2025-11-27 16:13:31] 2025-11-27 15:12:39,202 | INFO     | overall cleanup function is called
[2025-11-27 16:13:31] 2025-11-27 15:12:40,223 | INFO     | --- collectZombieJob: --- 10, [17549]
[2025-11-27 16:13:31] 2025-11-27 15:12:40,223 | INFO     | zombie collector waiting for pid 17549
[2025-11-27 16:13:31] 2025-11-27 15:12:40,223 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 16:13:31] 2025-11-27 15:12:40,224 | INFO     | collected zombie processes
[2025-11-27 16:13:31] 2025-11-27 15:12:40,224 | INFO     | will attempt to kill all subprocesses of pid=17549
[2025-11-27 16:13:31] 2025-11-27 15:12:40,335 | INFO     | process IDs to be killed: [17549] (in reverse order)
[2025-11-27 16:13:31] 2025-11-27 15:12:40,681 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 16:13:31] 2025-11-27 15:12:40,681 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 16:13:31] 2025-11-27 15:12:40,684 | INFO     | did not find any defunct processes belonging to 17549
[2025-11-27 16:13:31] 2025-11-27 15:12:40,686 | INFO     | did not find any defunct processes belonging to 17549
[2025-11-27 16:13:31] 2025-11-27 15:12:40,727 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 16:13:31] 2025-11-27 15:12:40,728 | INFO     | ready for new job
[2025-11-27 16:13:31] 2025-11-27 15:12:40,728 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 16:13:31] 2025-11-27 15:12:40,733 | INFO     | ***************************************
[2025-11-27 16:13:31] 2025-11-27 15:12:40,733 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 16:13:31] 2025-11-27 15:12:40,733 | INFO     | ***************************************
[2025-11-27 16:13:31] 2025-11-27 15:12:40,733 | INFO     | 
[2025-11-27 16:13:31] 2025-11-27 15:12:40,734 | INFO     | pilot is running in a VM
[2025-11-27 16:13:31] 2025-11-27 15:12:40,734 | INFO     | architecture information:
[2025-11-27 16:13:31] 2025-11-27 15:12:40,740 | INFO     | executing command: cat /etc/os-release
[2025-11-27 16:13:31] 2025-11-27 15:12:40,914 | INFO     | cat /etc/os-release:
[2025-11-27 16:13:31] NAME="CentOS Linux"
[2025-11-27 16:13:31] VERSION="7 (Core)"
[2025-11-27 16:13:31] ID="centos"
[2025-11-27 16:13:31] ID_LIKE="rhel fedora"
[2025-11-27 16:13:31] VERSION_ID="7"
[2025-11-27 16:13:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 16:13:31] ANSI_COLOR="0;31"
[2025-11-27 16:13:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 16:13:31] HOME_URL="https://www.centos.org/"
[2025-11-27 16:13:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 16:13:31] 
[2025-11-27 16:13:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 16:13:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 16:13:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 16:13:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 16:13:31] 
[2025-11-27 16:13:31] 2025-11-27 15:12:40,915 | INFO     | ***************************************
[2025-11-27 16:13:31] 2025-11-27 15:12:41,419 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2025-11-27 16:13:31] 2025-11-27 15:12:41,564 | INFO     | sufficient remaining disk space (494923677696 B)
[2025-11-27 16:13:31] 2025-11-27 15:12:41,564 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 16:13:31] 2025-11-27 15:12:41,564 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 16:13:31] 2025-11-27 15:12:41,564 | INFO     | update_server=False
[2025-11-27 16:13:31] 2025-11-27 15:12:41,564 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 16:13:31] 2025-11-27 15:12:41,565 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 16:13:31] 2025-11-27 15:12:41,701 | INFO     | all job control threads have been joined
[2025-11-27 16:13:31] 2025-11-27 15:12:42,128 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 16:13:31] 2025-11-27 15:12:42,128 | INFO     | aborting loop
[2025-11-27 16:13:31] 2025-11-27 15:12:42,377 | INFO     | all payload control threads have been joined
[2025-11-27 16:13:31] 2025-11-27 15:12:42,491 | INFO     | all data control threads have been joined
[2025-11-27 16:13:31] 2025-11-27 15:12:42,570 | INFO     | [job] retrieve thread has finished
[2025-11-27 16:13:31] 2025-11-27 15:12:42,595 | INFO     | [job] validate thread has finished
[2025-11-27 16:13:31] 2025-11-27 15:12:42,707 | INFO     | [job] control thread has finished
[2025-11-27 16:13:31] 2025-11-27 15:12:42,738 | INFO     | [data] copytool_in thread has finished
[2025-11-27 16:13:31] 2025-11-27 15:12:43,018 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 16:13:31] 2025-11-27 15:12:43,019 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 16:13:31] 2025-11-27 15:12:43,031 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 16:13:31] 2025-11-27 15:12:43,134 | INFO     | [job] job monitor thread has finished
[2025-11-27 16:13:31] 2025-11-27 15:12:43,172 | INFO     | [payload] failed_post thread has finished
[2025-11-27 16:13:31] 2025-11-27 15:12:43,175 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 16:13:31] 2025-11-27 15:12:43,383 | INFO     | [payload] control thread has finished
[2025-11-27 16:13:31] 2025-11-27 15:12:43,496 | INFO     | [data] control thread has finished
[2025-11-27 16:13:31] 2025-11-27 15:12:43,660 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 16:13:31] 2025-11-27 15:12:43,834 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 16:13:31] 2025-11-27 15:12:43,967 | INFO     | [payload] validate_post thread has finished
[2025-11-27 16:13:31] 2025-11-27 15:12:44,666 | INFO     | [job] queue monitor thread has finished
[2025-11-27 16:13:31] 2025-11-27 15:12:45,038 | INFO     | [data] copytool_out thread has finished
[2025-11-27 16:13:31] 2025-11-27 15:12:45,577 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 16:13:31] 2025-11-27 15:12:56,346 [wrapper] supervise_pilot (15 min periods counter: 93)
[2025-11-27 16:13:31] 2025-11-27 15:13:10,566 | INFO     | PID=10992 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 16:13:31] 2025-11-27 15:13:10,567 | INFO     | .. there are 9 such processes running
[2025-11-27 16:13:31] 2025-11-27 15:13:10,567 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 16:13:31] 2025-11-27 15:13:10,567 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 16:13:31] 2025-11-27 15:13:10,567 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 16:13:31] 2025-11-27 15:13:19,757 | INFO     | [monitor] cgroup control has ended
[2025-11-27 16:13:31] 2025-11-27 15:13:21,467 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139812550711104)>', '<ExcThread(monitor, started 139811973224192)>']
[2025-11-27 16:13:31] 2025-11-27 15:13:21,633 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 16:13:31] 2025-11-27 15:13:21,633 | INFO     | [monitor] control thread has ended
[2025-11-27 16:13:31] 2025-11-27 15:13:26,493 | INFO     | all workflow threads have been joined
[2025-11-27 16:13:31] 2025-11-27 15:13:26,493 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 16:13:31] 2025-11-27 15:13:26,494 | INFO     | traces error code: 0
[2025-11-27 16:13:31] 2025-11-27 15:13:26,494 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 16:13:31] 2025-11-27 15:13:26,820 [wrapper] ==== pilot stdout END ====
[2025-11-27 16:13:31] 2025-11-27 15:13:26,914 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 16:13:31] 2025-11-27 15:13:27,010 [wrapper] pilotpid: 10992
[2025-11-27 16:13:31] 2025-11-27 15:13:27,107 [wrapper] Pilot exit status: 0
[2025-11-27 16:13:31] 2025-11-27 15:13:27,434 [wrapper] pandaids: 6894264776
[2025-11-27 16:13:31] 2025-11-27 15:13:28,684 [wrapper] cleanup supervisor_pilot 22601 10993
[2025-11-27 16:13:31] 2025-11-27 15:13:28,778 [wrapper] Test setup, not cleaning
[2025-11-27 16:13:31] 2025-11-27 15:13:28,837 [wrapper] apfmon messages muted
[2025-11-27 16:13:31] 2025-11-27 15:13:28,948 [wrapper] ==== wrapper stdout END ====
[2025-11-27 16:13:31] 2025-11-27 15:13:29,061 [wrapper] ==== wrapper stderr END ====
[2025-11-27 16:13:31]  *** Error codes and diagnostics ***
[2025-11-27 16:13:31]     "exeErrorCode": 0,
[2025-11-27 16:13:31]     "exeErrorDiag": "",
[2025-11-27 16:13:31]     "pilotErrorCode": 0,
[2025-11-27 16:13:31]     "pilotErrorDiag": "",
[2025-11-27 16:13:31]  *** Listing of results directory ***
[2025-11-27 16:13:31] total 1323080
[2025-11-27 16:13:31] -rw-r--r--. 1 boinc boinc    576529 Nov 21 05:12 pilot3.tar.gz
[2025-11-27 16:13:31] -rwx------. 1 boinc boinc     36292 Nov 21 05:52 runpilot2-wrapper.sh
[2025-11-27 16:13:31] -rw-r--r--. 1 boinc boinc      5112 Nov 21 05:52 queuedata.json
[2025-11-27 16:13:31] -rw-r--r--. 1 boinc boinc       100 Nov 26 17:07 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 16:13:31] -rwxr-xr-x. 1 boinc boinc      7986 Nov 26 17:07 run_atlas
[2025-11-27 16:13:31] -rw-r--r--. 1 boinc boinc       105 Nov 26 17:07 job.xml
[2025-11-27 16:13:31] -rw-r--r--. 1 boinc boinc      6392 Nov 26 17:07 init_data.xml
[2025-11-27 16:13:31] -rw-r--r--. 2 boinc boinc 409524819 Nov 26 17:07 EVNT.47493127._002201.pool.root.1
[2025-11-27 16:13:31] -rw-r--r--. 2 boinc boinc     15847 Nov 26 17:07 start_atlas.sh
[2025-11-27 16:13:31] drwxrwx--x. 2 boinc boinc        68 Nov 26 17:07 shared
[2025-11-27 16:13:31] -rw-r--r--. 2 boinc boinc    590103 Nov 26 17:07 input.tar.gz
[2025-11-27 16:13:31] -rw-r--r--. 1 boinc boinc         0 Nov 26 17:07 boinc_lockfile
[2025-11-27 16:13:31] -rw-r--r--. 1 boinc boinc      2786 Nov 26 17:07 pandaJob.out
[2025-11-27 16:13:31] -rw-------. 1 boinc boinc    991855 Nov 26 17:11 agis_schedconf.cvmfs.json
[2025-11-27 16:13:31] drwx------. 5 boinc boinc      4096 Nov 26 17:11 pilot3
[2025-11-27 16:13:31] -rw-r--r--. 1 boinc boinc       533 Nov 27 15:49 boinc_task_state.xml
[2025-11-27 16:13:31] -rw-------. 1 boinc boinc 914432320 Nov 27 16:09 HITS.47533967._001726.pool.root.1
[2025-11-27 16:13:31] -rw-------. 1 boinc boinc      1027 Nov 27 16:10 memory_monitor_summary.json
[2025-11-27 16:13:31] -rw-------. 1 boinc boinc   1516240 Nov 27 16:10 agis_ddmendpoints.agis.ALL.json
[2025-11-27 16:13:31] -rw-------. 1 boinc boinc   2443043 Nov 27 16:10 log.47533967._001726.job.log.tgz.1
[2025-11-27 16:13:31] -rw-------. 1 boinc boinc        95 Nov 27 16:12 pilot_heartbeat.json
[2025-11-27 16:13:31] -rw-------. 1 boinc boinc      7945 Nov 27 16:12 heartbeat.json
[2025-11-27 16:13:31] -rw-r--r--. 1 boinc boinc      8192 Nov 27 16:13 boinc_mmap_file
[2025-11-27 16:13:31] -rw-r--r--. 1 boinc boinc        29 Nov 27 16:13 wrapper_checkpoint.txt
[2025-11-27 16:13:31] -rw-------. 1 boinc boinc      4884 Nov 27 16:13 pilotlog.txt
[2025-11-27 16:13:31] -rw-------. 1 boinc boinc  11045415 Nov 27 16:13 log.47533967._001726.job.log.1
[2025-11-27 16:13:31] -rw-------. 1 boinc boinc       353 Nov 27 16:13 output.list
[2025-11-27 16:13:31] -rw-r--r--. 1 boinc boinc       620 Nov 27 16:13 runtime_log
[2025-11-27 16:13:31] -rw-------. 1 boinc boinc  13506560 Nov 27 16:13 result.tar.gz
[2025-11-27 16:13:31] -rw-r--r--. 1 boinc boinc      8817 Nov 27 16:13 runtime_log.err
[2025-11-27 16:13:31] -rw-------. 1 boinc boinc       662 Nov 27 16:13 e2QLDmdJYg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmw2IKDmZ9OIUn.diag
[2025-11-27 16:13:31] -rw-r--r--. 1 boinc boinc     21477 Nov 27 16:13 stderr.txt
[2025-11-27 16:13:32] HITS file was successfully produced:
[2025-11-27 16:13:32] -rw-------. 1 boinc boinc 914432320 Nov 27 16:09 shared/HITS.pool.root.1
[2025-11-27 16:13:32]  *** Contents of shared directory: ***
[2025-11-27 16:13:32] total 1306720
[2025-11-27 16:13:32] -rw-r--r--. 2 boinc boinc 409524819 Nov 26 17:07 ATLAS.root_0
[2025-11-27 16:13:32] -rw-r--r--. 2 boinc boinc     15847 Nov 26 17:07 start_atlas.sh
[2025-11-27 16:13:32] -rw-r--r--. 2 boinc boinc    590103 Nov 26 17:07 input.tar.gz
[2025-11-27 16:13:32] -rw-------. 1 boinc boinc 914432320 Nov 27 16:09 HITS.pool.root.1
[2025-11-27 16:13:32] -rw-------. 1 boinc boinc  13506560 Nov 27 16:13 result.tar.gz
16:13:33 (7203): run_atlas exited; CPU time 312132.275557
16:13:33 (7203): called boinc_finish(0)

</stderr_txt>
]]>

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