Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
22:14:03 (7085): wrapper (7.7.26015): starting
22:14:03 (7085): wrapper: running run_atlas (--nthreads 12)
[2025-11-23 22:14:03] Arguments: --nthreads 12
[2025-11-23 22:14:03] Threads: 12
[2025-11-23 22:14:03] Checking for CVMFS
[2025-11-23 22:14:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 22:14:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 22:14:03] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 22:14:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 22:14:03] 2.11.2.0 3081 284200 97500 153230 1 81 14642684 20275200 1 130560 1 128087228 99.965 16735744 14278 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-23 22:14:03] CVMFS is ok
[2025-11-23 22:14:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 22:14:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 22:14:03] Further information can be found at the LHC@home message board.
[2025-11-23 22:14:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 22:14:03] Checking for apptainer binary...
[2025-11-23 22:14:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 22:14:03] Running /usr/bin/apptainer --version
[2025-11-23 22:14:03] apptainer version 1.3.2-1.el7
[2025-11-23 22:14:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 22:14:05] c-205-29.aglt2.org
[2025-11-23 22:14:05] apptainer works
[2025-11-23 22:14:05] Set ATHENA_PROC_NUMBER=12
[2025-11-23 22:14:05] Set ATHENA_CORE_NUMBER=12
[2025-11-23 22:14:05] Starting ATLAS job with PandaID=6895355547
[2025-11-23 22:14:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
01:30:15 (1289): wrapper (7.7.26015): starting
01:30:15 (1289): wrapper: running run_atlas (--nthreads 12)
[2025-11-24 01:30:15] Arguments: --nthreads 12
[2025-11-24 01:30:15] Threads: 12
[2025-11-24 01:30:15] This job has been restarted, cleaning up previous attempt
[2025-11-24 01:30:15] Checking for CVMFS
[2025-11-24 01:30:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 01:30:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 01:30:15] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 01:30:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 01:30:15] 2.11.2.0 3081 284397 97784 153236 0 51 14890429 20275200 1 130560 1 128200855 99.965 16744959 14284 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-24 01:30:15] CVMFS is ok
[2025-11-24 01:30:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 01:30:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 01:30:15] Further information can be found at the LHC@home message board.
[2025-11-24 01:30:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 01:30:15] Checking for apptainer binary...
[2025-11-24 01:30:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 01:30:15] Running /usr/bin/apptainer --version
[2025-11-24 01:30:15] apptainer version 1.3.2-1.el7
[2025-11-24 01:30:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 01:30:17] c-205-29.aglt2.org
[2025-11-24 01:30:17] apptainer works
[2025-11-24 01:30:17] Set ATHENA_PROC_NUMBER=12
[2025-11-24 01:30:17] Set ATHENA_CORE_NUMBER=12
[2025-11-24 01:30:17] Starting ATLAS job with PandaID=6895355547
[2025-11-24 01:30:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 08:39:21]  *** The last 200 lines of the pilot log: ***
[2025-11-24 08:39:21] 2025-11-24 13:38:32,996 | INFO     | PID=5184 has CPU usage=11.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-24 08:39:21] 2025-11-24 13:38:33,997 | INFO     | time since job start (25681s) is within the limit (172800.0s)
[2025-11-24 08:39:21] 2025-11-24 13:38:34,079 | INFO     | monitor loop #1924: job 0:6895355547 is in state 'finished'
[2025-11-24 08:39:21] 2025-11-24 13:38:34,079 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 08:39:21] 2025-11-24 13:38:34,860 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-24 08:39:21] 2025-11-24 13:38:34,864 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1695.8333333333333
[2025-11-24 08:39:21] 2025-11-24 13:38:34,866 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895355547/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 08:39:21] 2025-11-24 13:38:34,866 | INFO     | extracted standard info from prmon json
[2025-11-24 08:39:21] 2025-11-24 13:38:34,866 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 08:39:21] 2025-11-24 13:38:34,866 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 08:39:21] 2025-11-24 13:38:34,873 | INFO     | fitting pss+swap vs Time
[2025-11-24 08:39:21] 2025-11-24 13:38:34,873 | INFO     | sum of square deviations: 23138087457.60568
[2025-11-24 08:39:21] 2025-11-24 13:38:34,877 | INFO     | sum of deviations: 317663275833.03827
[2025-11-24 08:39:21] 2025-11-24 13:38:34,877 | INFO     | mean x: 1763978671.209026
[2025-11-24 08:39:21] 2025-11-24 13:38:34,877 | INFO     | mean y: 3448046.726840855
[2025-11-24 08:39:21] 2025-11-24 13:38:34,878 | INFO     | intersect: -24214251200.134514
[2025-11-24 08:39:21] 2025-11-24 13:38:34,878 | INFO     | chi2: 5.762050030871716
[2025-11-24 08:39:21] 2025-11-24 13:38:34,879 | INFO     | sum of square deviations: 22323475767.38469
[2025-11-24 08:39:21] 2025-11-24 13:38:34,882 | INFO     | sum of deviations: 487593360652.34607
[2025-11-24 08:39:21] 2025-11-24 13:38:34,882 | INFO     | mean x: 1763978518.7115386
[2025-11-24 08:39:21] 2025-11-24 13:38:34,883 | INFO     | mean y: 3479824.6778846155
[2025-11-24 08:39:21] 2025-11-24 13:38:34,883 | INFO     | intersect: -38525655289.386475
[2025-11-24 08:39:21] 2025-11-24 13:38:34,883 | INFO     | chi2: 2.455260931554951
[2025-11-24 08:39:21] 2025-11-24 13:38:34,883 | INFO     | current chi2=2.455260931554951 (change=57.38910772380945 %)
[2025-11-24 08:39:21] 2025-11-24 13:38:34,884 | INFO     | sum of square deviations: 21528213277.158062
[2025-11-24 08:39:21] 2025-11-24 13:38:34,887 | INFO     | sum of deviations: 504022191998.89294
[2025-11-24 08:39:21] 2025-11-24 13:38:34,887 | INFO     | mean x: 1763978366.2141118
[2025-11-24 08:39:21] 2025-11-24 13:38:34,888 | INFO     | mean y: 3482940.5012165452
[2025-11-24 08:39:21] 2025-11-24 13:38:34,888 | INFO     | intersect: -41295078687.98292
[2025-11-24 08:39:21] 2025-11-24 13:38:34,888 | INFO     | chi2: 2.295178709978238
[2025-11-24 08:39:21] 2025-11-24 13:38:34,888 | INFO     | current chi2=2.295178709978238 (change=6.5199677769209945 %)
[2025-11-24 08:39:21] 2025-11-24 13:38:34,888 | INFO     | right removable region: 410
[2025-11-24 08:39:21] 2025-11-24 13:38:34,889 | INFO     | sum of square deviations: 22323422087.384705
[2025-11-24 08:39:21] 2025-11-24 13:38:34,893 | INFO     | sum of deviations: 188473335558.6153
[2025-11-24 08:39:21] 2025-11-24 13:38:34,893 | INFO     | mean x: 1763978823.7115386
[2025-11-24 08:39:21] 2025-11-24 13:38:34,893 | INFO     | mean y: 3472142.6634615385
[2025-11-24 08:39:21] 2025-11-24 13:38:34,893 | INFO     | intersect: -14889538949.374979
[2025-11-24 08:39:21] 2025-11-24 13:38:34,893 | INFO     | chi2: 3.6144930732304954
[2025-11-24 08:39:21] 2025-11-24 13:38:34,893 | INFO     | current chi2=3.6144930732304954 (change=37.27071001006782 %)
[2025-11-24 08:39:21] 2025-11-24 13:38:34,894 | INFO     | sum of square deviations: 21528105917.15807
[2025-11-24 08:39:21] 2025-11-24 13:38:34,898 | INFO     | sum of deviations: 155882991723.0413
[2025-11-24 08:39:21] 2025-11-24 13:38:34,898 | INFO     | mean x: 1763978976.2141118
[2025-11-24 08:39:21] 2025-11-24 13:38:34,898 | INFO     | mean y: 3478384.579075426
[2025-11-24 08:39:21] 2025-11-24 13:38:34,898 | INFO     | intersect: -12769327602.483936
[2025-11-24 08:39:21] 2025-11-24 13:38:34,898 | INFO     | chi2: 3.553959913370027
[2025-11-24 08:39:21] 2025-11-24 13:38:34,899 | INFO     | current chi2=3.553959913370027 (change=1.6747344270427984 %)
[2025-11-24 08:39:21] 2025-11-24 13:38:34,899 | INFO     | left removable region: 20
[2025-11-24 08:39:21] 2025-11-24 13:38:34,899 | INFO     | sum of square deviations: 18393965352.09244
[2025-11-24 08:39:21] 2025-11-24 13:38:34,902 | INFO     | sum of deviations: 301182207326.2923
[2025-11-24 08:39:21] 2025-11-24 13:38:34,902 | INFO     | mean x: 1763978945.7230768
[2025-11-24 08:39:21] 2025-11-24 13:38:34,903 | INFO     | mean y: 3522572.956410256
[2025-11-24 08:39:21] 2025-11-24 13:38:34,903 | INFO     | intersect: -28879812933.030373
[2025-11-24 08:39:21] 2025-11-24 13:38:34,903 | INFO     | chi2: 0.023750452832516714
[2025-11-24 08:39:21] 2025-11-24 13:38:34,903 | INFO     | current memory leak: 16.37 B/s (using 390 data points, chi2=0.02)
[2025-11-24 08:39:21] 2025-11-24 13:38:34,904 | INFO     | could have reported an average CPU frequency of 2369 MHz (18 samples)
[2025-11-24 08:39:21] 2025-11-24 13:38:34,904 | INFO     | ..............................
[2025-11-24 08:39:21] 2025-11-24 13:38:34,904 | INFO     | . Timing measurements:
[2025-11-24 08:39:21] 2025-11-24 13:38:34,904 | INFO     | . get job = 0 s
[2025-11-24 08:39:21] 2025-11-24 13:38:34,904 | INFO     | . initial setup = 2 s
[2025-11-24 08:39:21] 2025-11-24 13:38:34,904 | INFO     | . payload setup = 7 s
[2025-11-24 08:39:21] 2025-11-24 13:38:34,904 | INFO     | . stage-in = 0 s
[2025-11-24 08:39:21] 2025-11-24 13:38:34,904 | INFO     | . payload execution = 25642 s
[2025-11-24 08:39:21] 2025-11-24 13:38:34,905 | INFO     | . stage-out = 3 s
[2025-11-24 08:39:21] 2025-11-24 13:38:34,905 | INFO     | . log creation = 0 s
[2025-11-24 08:39:21] 2025-11-24 13:38:34,905 | INFO     | ..............................
[2025-11-24 08:39:21] 2025-11-24 13:38:35,006 | INFO     | 
[2025-11-24 08:39:21] 2025-11-24 13:38:35,006 | INFO     | job summary report
[2025-11-24 08:39:21] 2025-11-24 13:38:35,007 | INFO     | --------------------------------------------------
[2025-11-24 08:39:21] 2025-11-24 13:38:35,007 | INFO     | PanDA job id: 6895355547
[2025-11-24 08:39:21] 2025-11-24 13:38:35,007 | INFO     | task id: 47556137
[2025-11-24 08:39:21] 2025-11-24 13:38:35,007 | INFO     | errors: (none)
[2025-11-24 08:39:21] 2025-11-24 13:38:35,007 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 08:39:21] 2025-11-24 13:38:35,007 | INFO     | pilot state: finished 
[2025-11-24 08:39:21] 2025-11-24 13:38:35,008 | INFO     | transexitcode: 0
[2025-11-24 08:39:21] 2025-11-24 13:38:35,008 | INFO     | exeerrorcode: 0
[2025-11-24 08:39:21] 2025-11-24 13:38:35,008 | INFO     | exeerrordiag: 
[2025-11-24 08:39:21] 2025-11-24 13:38:35,008 | INFO     | exitcode: 0
[2025-11-24 08:39:21] 2025-11-24 13:38:35,008 | INFO     | exitmsg: OK
[2025-11-24 08:39:21] 2025-11-24 13:38:35,008 | INFO     | cpuconsumptiontime: 295358 s
[2025-11-24 08:39:21] 2025-11-24 13:38:35,008 | INFO     | nevents: 1000
[2025-11-24 08:39:21] 2025-11-24 13:38:35,009 | INFO     | neventsw: 0
[2025-11-24 08:39:21] 2025-11-24 13:38:35,009 | INFO     | pid: 12040
[2025-11-24 08:39:21] 2025-11-24 13:38:35,009 | INFO     | pgrp: 12040
[2025-11-24 08:39:21] 2025-11-24 13:38:35,009 | INFO     | corecount: 12
[2025-11-24 08:39:21] 2025-11-24 13:38:35,009 | INFO     | event service: False
[2025-11-24 08:39:21] 2025-11-24 13:38:35,009 | INFO     | sizes: {0: 2298806, 5: 2299068, 11: 2299124, 25653: 2336333, 25657: 2346118, 25660: 2346174, 25666: 2346548}
[2025-11-24 08:39:21] 2025-11-24 13:38:35,010 | INFO     | --------------------------------------------------
[2025-11-24 08:39:21] 2025-11-24 13:38:35,010 | INFO     | 
[2025-11-24 08:39:21] 2025-11-24 13:38:35,010 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-24 08:39:21] 2025-11-24 13:38:35,034 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 08:39:21] 2025-11-24 13:38:35,034 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 08:39:21] 2025-11-24 13:38:35,034 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 08:39:21] 2025-11-24 13:38:35,034 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 08:39:21] 2025-11-24 13:38:35,034 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 08:39:21] 2025-11-24 13:38:35,034 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 08:39:21] 2025-11-24 13:38:35,035 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 08:39:21] 2025-11-24 13:38:35,035 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 08:39:21] 2025-11-24 13:38:35,035 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 08:39:21] 2025-11-24 13:38:35,035 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 08:39:21] 2025-11-24 13:38:35,035 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 08:39:21] 2025-11-24 13:38:35,035 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 08:39:21] 2025-11-24 13:38:35,036 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 08:39:21] 2025-11-24 13:38:35,036 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 08:39:21] 2025-11-24 13:38:35,036 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 08:39:21] 2025-11-24 13:38:35,036 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 08:39:21] 2025-11-24 13:38:35,036 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 08:39:21] 2025-11-24 13:38:35,036 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 08:39:21] 2025-11-24 13:38:35,037 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 08:39:21] 2025-11-24 13:38:35,037 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 08:39:21] 2025-11-24 13:38:35,037 | INFO     | job 6895355547 has completed (purged errors)
[2025-11-24 08:39:21] 2025-11-24 13:38:35,037 | INFO     | overall cleanup function is called
[2025-11-24 08:39:21] 2025-11-24 13:38:36,053 | INFO     | --- collectZombieJob: --- 10, [12040]
[2025-11-24 08:39:21] 2025-11-24 13:38:36,053 | INFO     | zombie collector waiting for pid 12040
[2025-11-24 08:39:21] 2025-11-24 13:38:36,054 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 08:39:21] 2025-11-24 13:38:36,054 | INFO     | collected zombie processes
[2025-11-24 08:39:21] 2025-11-24 13:38:36,054 | INFO     | will attempt to kill all subprocesses of pid=12040
[2025-11-24 08:39:21] 2025-11-24 13:38:36,148 | INFO     | process IDs to be killed: [12040] (in reverse order)
[2025-11-24 08:39:21] 2025-11-24 13:38:36,200 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 08:39:21] 2025-11-24 13:38:36,200 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 08:39:21] 2025-11-24 13:38:36,204 | INFO     | did not find any defunct processes belonging to 12040
[2025-11-24 08:39:21] 2025-11-24 13:38:36,207 | INFO     | did not find any defunct processes belonging to 12040
[2025-11-24 08:39:21] 2025-11-24 13:38:36,209 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 08:39:21] 2025-11-24 13:38:36,209 | INFO     | ready for new job
[2025-11-24 08:39:21] 2025-11-24 13:38:36,209 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 08:39:21] 2025-11-24 13:38:36,211 | INFO     | ***************************************
[2025-11-24 08:39:21] 2025-11-24 13:38:36,211 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 08:39:21] 2025-11-24 13:38:36,212 | INFO     | ***************************************
[2025-11-24 08:39:21] 2025-11-24 13:38:36,212 | INFO     | 
[2025-11-24 08:39:21] 2025-11-24 13:38:36,212 | INFO     | architecture information:
[2025-11-24 08:39:21] 2025-11-24 13:38:36,213 | INFO     | executing command: cat /etc/os-release
[2025-11-24 08:39:21] 2025-11-24 13:38:36,227 | INFO     | cat /etc/os-release:
[2025-11-24 08:39:21] NAME="CentOS Linux"
[2025-11-24 08:39:21] VERSION="7 (Core)"
[2025-11-24 08:39:21] ID="centos"
[2025-11-24 08:39:21] ID_LIKE="rhel fedora"
[2025-11-24 08:39:21] VERSION_ID="7"
[2025-11-24 08:39:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 08:39:21] ANSI_COLOR="0;31"
[2025-11-24 08:39:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 08:39:21] HOME_URL="https://www.centos.org/"
[2025-11-24 08:39:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 08:39:21] 
[2025-11-24 08:39:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 08:39:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 08:39:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 08:39:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 08:39:21] 
[2025-11-24 08:39:21] 2025-11-24 13:38:36,228 | INFO     | ***************************************
[2025-11-24 08:39:21] 2025-11-24 13:38:36,730 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-24 08:39:21] 2025-11-24 13:38:36,747 | INFO     | sufficient remaining disk space (28248637440 B)
[2025-11-24 08:39:21] 2025-11-24 13:38:36,747 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 08:39:21] 2025-11-24 13:38:36,748 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 08:39:21] 2025-11-24 13:38:36,748 | INFO     | update_server=False
[2025-11-24 08:39:21] 2025-11-24 13:38:36,748 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 08:39:21] 2025-11-24 13:38:36,748 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 08:39:21] 2025-11-24 13:38:36,749 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 08:39:21] 2025-11-24 13:38:37,588 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 08:39:21] 2025-11-24 13:38:37,588 | INFO     | aborting loop
[2025-11-24 08:39:21] 2025-11-24 13:38:37,751 | INFO     | [job] retrieve thread has finished
[2025-11-24 08:39:21] 2025-11-24 13:38:37,754 | INFO     | [job] queue monitor thread has finished
[2025-11-24 08:39:21] 2025-11-24 13:38:37,756 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 08:39:21] 2025-11-24 13:38:37,840 | INFO     | all data control threads have been joined
[2025-11-24 08:39:21] 2025-11-24 13:38:37,881 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 08:39:21] 2025-11-24 13:38:38,095 | INFO     | all payload control threads have been joined
[2025-11-24 08:39:21] 2025-11-24 13:38:38,189 | INFO     | [data] copytool_in thread has finished
[2025-11-24 08:39:21] 2025-11-24 13:38:38,284 | INFO     | all job control threads have been joined
[2025-11-24 08:39:21] 2025-11-24 13:38:38,496 | INFO     | [payload] validate_post thread has finished
[2025-11-24 08:39:21] 2025-11-24 13:38:38,593 | INFO     | [job] job monitor thread has finished
[2025-11-24 08:39:21] 2025-11-24 13:38:38,733 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 08:39:21] 2025-11-24 13:38:38,736 | INFO     | [job] validate thread has finished
[2025-11-24 08:39:21] 2025-11-24 13:38:38,754 | INFO     | [data] copytool_out thread has finished
[2025-11-24 08:39:21] 2025-11-24 13:38:38,756 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 08:39:21] 2025-11-24 13:38:38,846 | INFO     | [data] control thread has finished
[2025-11-24 08:39:21] 2025-11-24 13:38:38,923 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 08:39:21] 2025-11-24 13:38:39,101 | INFO     | [payload] control thread has finished
[2025-11-24 08:39:21] 2025-11-24 13:38:39,289 | INFO     | [job] control thread has finished
[2025-11-24 08:39:21] 2025-11-24 13:38:39,331 | INFO     | [payload] failed_post thread has finished
[2025-11-24 08:39:21] 2025-11-24 13:38:42,758 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 08:39:21] 2025-11-24 13:39:07,200 | INFO     | PID=5184 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-24 08:39:21] 2025-11-24 13:39:07,201 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 08:39:21] 2025-11-24 13:39:07,201 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 08:39:21] 2025-11-24 13:39:07,201 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 08:39:21] 2025-11-24 13:39:13,790 | INFO     | [monitor] cgroup control has ended
[2025-11-24 08:39:21] 2025-11-24 13:39:15,749 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140569517438784)>', '<ExcThread(monitor, started 140568634058496)>']
[2025-11-24 08:39:21] 2025-11-24 13:39:16,233 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 08:39:21] 2025-11-24 13:39:16,233 | INFO     | [monitor] control thread has ended
[2025-11-24 08:39:21] 2025-11-24 13:39:20,772 | INFO     | all workflow threads have been joined
[2025-11-24 08:39:21] 2025-11-24 13:39:20,772 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 08:39:21] 2025-11-24 13:39:20,773 | INFO     | traces error code: 0
[2025-11-24 08:39:21] 2025-11-24 13:39:20,773 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 08:39:21] 2025-11-24 13:39:20,855 [wrapper] ==== pilot stdout END ====
[2025-11-24 08:39:21] 2025-11-24 13:39:20,859 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 08:39:21] 2025-11-24 13:39:20,863 [wrapper] pilotpid: 5184
[2025-11-24 08:39:21] 2025-11-24 13:39:20,867 [wrapper] Pilot exit status: 0
[2025-11-24 08:39:21] 2025-11-24 13:39:20,882 [wrapper] pandaids: 6895355547 6895355547
[2025-11-24 08:39:21] 2025-11-24 13:39:20,925 [wrapper] cleanup supervisor_pilot  7557 5185
[2025-11-24 08:39:21] 2025-11-24 13:39:20,929 [wrapper] Test setup, not cleaning
[2025-11-24 08:39:21] 2025-11-24 13:39:20,932 [wrapper] apfmon messages muted
[2025-11-24 08:39:21] 2025-11-24 13:39:20,936 [wrapper] ==== wrapper stdout END ====
[2025-11-24 08:39:21] 2025-11-24 13:39:20,940 [wrapper] ==== wrapper stderr END ====
[2025-11-24 08:39:21]  *** Error codes and diagnostics ***
[2025-11-24 08:39:21]     "exeErrorCode": 0,
[2025-11-24 08:39:21]     "exeErrorDiag": "",
[2025-11-24 08:39:21]     "pilotErrorCode": 0,
[2025-11-24 08:39:21]     "pilotErrorDiag": "",
[2025-11-24 08:39:21]  *** Listing of results directory ***
[2025-11-24 08:39:21] total 1712572
[2025-11-24 08:39:21] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-24 08:39:21] -rw-r--r-- 1 boincer umatlas    576529 Nov 23 02:49 pilot3.tar.gz
[2025-11-24 08:39:21] -rwx------ 1 boincer umatlas     36292 Nov 23 02:54 runpilot2-wrapper.sh
[2025-11-24 08:39:21] -rw-r--r-- 1 boincer umatlas      5112 Nov 23 02:54 queuedata.json
[2025-11-24 08:39:21] -rw-r--r-- 1 boincer umatlas       100 Nov 23 22:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 08:39:21] -rwxr-xr-x 1 boincer umatlas      7986 Nov 23 22:13 run_atlas
[2025-11-24 08:39:21] -rw-r--r-- 1 boincer umatlas       105 Nov 23 22:13 job.xml
[2025-11-24 08:39:21] -rw-r--r-- 3 boincer umatlas 408523673 Nov 23 22:14 EVNT.47483658._000664.pool.root.1
[2025-11-24 08:39:21] -rw-r--r-- 3 boincer umatlas 408523673 Nov 23 22:14 ATLAS.root_0
[2025-11-24 08:39:21] -rw-r--r-- 2 boincer umatlas     15847 Nov 23 22:14 start_atlas.sh
[2025-11-24 08:39:21] drwxrwx--x 2 boincer umatlas      4096 Nov 23 22:14 shared
[2025-11-24 08:39:21] -rw-r--r-- 2 boincer umatlas    590095 Nov 23 22:14 input.tar.gz
[2025-11-24 08:39:21] -rw-r--r-- 1 boincer umatlas         0 Nov 23 22:14 boinc_lockfile
[2025-11-24 08:39:21] -rw-r--r-- 1 boincer umatlas      2785 Nov 24 01:30 pandaJob.out
[2025-11-24 08:39:21] -rw------- 1 boincer umatlas        57 Nov 24 01:30 setup.sh.local
[2025-11-24 08:39:21] -rw------- 1 boincer umatlas    989786 Nov 24 01:30 agis_schedconf.cvmfs.json
[2025-11-24 08:39:21] -rw-r--r-- 1 boincer umatlas       532 Nov 24 08:30 boinc_task_state.xml
[2025-11-24 08:39:21] -rw-r--r-- 1 boincer umatlas      5955 Nov 24 08:36 init_data.xml
[2025-11-24 08:39:21] -rw------- 1 boincer umatlas 921154892 Nov 24 08:37 HITS.47556137._006599.pool.root.1
[2025-11-24 08:39:21] -rw------- 1 boincer umatlas      1061 Nov 24 08:38 memory_monitor_summary.json
[2025-11-24 08:39:21] -rw------- 1 boincer umatlas   1516227 Nov 24 08:38 agis_ddmendpoints.agis.ALL.json
[2025-11-24 08:39:21] -rw------- 1 boincer umatlas   2182772 Nov 24 08:38 log.47556137._006599.job.log.tgz.1
[2025-11-24 08:39:21] -rw------- 1 boincer umatlas      8677 Nov 24 08:38 heartbeat.json
[2025-11-24 08:39:21] -rw------- 1 boincer umatlas        96 Nov 24 08:39 pilot_heartbeat.json
[2025-11-24 08:39:21] -rw-r--r-- 1 boincer umatlas        29 Nov 24 08:39 wrapper_checkpoint.txt
[2025-11-24 08:39:21] -rw-r--r-- 1 boincer umatlas      8192 Nov 24 08:39 boinc_mmap_file
[2025-11-24 08:39:21] -rw------- 1 boincer umatlas      4745 Nov 24 08:39 pilotlog.txt
[2025-11-24 08:39:21] -rw------- 1 boincer umatlas   3595998 Nov 24 08:39 log.47556137._006599.job.log.1
[2025-11-24 08:39:21] -rw------- 1 boincer umatlas       353 Nov 24 08:39 output.list
[2025-11-24 08:39:21] -rw-r--r-- 1 boincer umatlas       620 Nov 24 08:39 runtime_log
[2025-11-24 08:39:21] -rw------- 1 boincer umatlas   5795840 Nov 24 08:39 result.tar.gz
[2025-11-24 08:39:21] -rw-r--r-- 1 boincer umatlas      9430 Nov 24 08:39 runtime_log.err
[2025-11-24 08:39:21] -rw------- 1 boincer umatlas       795 Nov 24 08:39 hDfLDmU6Jh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmqTIKDmNlOItm.diag
[2025-11-24 08:39:21] -rw-r--r-- 1 boincer umatlas     23581 Nov 24 08:39 stderr.txt
[2025-11-24 08:39:21] HITS file was successfully produced:
[2025-11-24 08:39:21] -rw------- 1 boincer umatlas 921154892 Nov 24 08:37 shared/HITS.pool.root.1
[2025-11-24 08:39:21]  *** Contents of shared directory: ***
[2025-11-24 08:39:21] total 1304780
[2025-11-24 08:39:21] -rw-r--r-- 3 boincer umatlas 408523673 Nov 23 22:14 ATLAS.root_0
[2025-11-24 08:39:21] -rw-r--r-- 2 boincer umatlas     15847 Nov 23 22:14 start_atlas.sh
[2025-11-24 08:39:21] -rw-r--r-- 2 boincer umatlas    590095 Nov 23 22:14 input.tar.gz
[2025-11-24 08:39:21] -rw------- 1 boincer umatlas 921154892 Nov 24 08:37 HITS.pool.root.1
[2025-11-24 08:39:21] -rw------- 1 boincer umatlas   5795840 Nov 24 08:39 result.tar.gz
08:39:22 (1289): run_atlas exited; CPU time 288683.226508
08:39:22 (1289): called boinc_finish(0)

</stderr_txt>
]]>

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