Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
05:12:22 (1123425): wrapper (7.7.26015): starting
05:12:22 (1123425): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 05:12:22] Arguments: --nthreads 8
[2025-11-24 05:12:22] Threads: 8
[2025-11-24 05:12:22] Checking for CVMFS
[2025-11-24 05:12:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 05:12:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 05:12:22] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 05:12:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 05:12:22] 2.13.3.0 9702 27036 322244 153240 0 351 30672737 32935936 26260 16776704 0 140911781 99.699 100771832 32899 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-24 05:12:22] CVMFS is ok
[2025-11-24 05:12:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 05:12:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 05:12:22] Further information can be found at the LHC@home message board.
[2025-11-24 05:12:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 05:12:22] Checking for apptainer binary...
[2025-11-24 05:12:22] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 05:12:22] Running /usr/bin/apptainer --version
[2025-11-24 05:12:22] apptainer version 1.4.4-1.el9
[2025-11-24 05:12:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 05:12:23] c-4-37.aglt2.org
[2025-11-24 05:12:23] apptainer works
[2025-11-24 05:12:23] Set ATHENA_PROC_NUMBER=8
[2025-11-24 05:12:23] Set ATHENA_CORE_NUMBER=8
[2025-11-24 05:12:23] Starting ATLAS job with PandaID=6895355565
[2025-11-24 05:12:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
06:30:08 (1327920): wrapper (7.7.26015): starting
06:30:08 (1327920): wrapper: running run_atlas (--nthreads 9)
[2025-11-24 06:30:08] Arguments: --nthreads 9
[2025-11-24 06:30:08] Threads: 9
[2025-11-24 06:30:08] This job has been restarted, cleaning up previous attempt
[2025-11-24 06:30:08] Checking for CVMFS
[2025-11-24 06:30:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 06:30:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 06:30:08] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 06:30:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 06:30:08] 2.13.3.0 9702 27114 317568 153244 2 260 31188878 32935936 23682 16776704 0 141119675 99.700 100960989 32905 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-24 06:30:08] CVMFS is ok
[2025-11-24 06:30:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 06:30:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 06:30:08] Further information can be found at the LHC@home message board.
[2025-11-24 06:30:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 06:30:08] Checking for apptainer binary...
[2025-11-24 06:30:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 06:30:08] Running /usr/bin/apptainer --version
[2025-11-24 06:30:08] apptainer version 1.4.4-1.el9
[2025-11-24 06:30:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 06:30:08] c-4-37.aglt2.org
[2025-11-24 06:30:08] apptainer works
[2025-11-24 06:30:08] Set ATHENA_PROC_NUMBER=9
[2025-11-24 06:30:08] Set ATHENA_CORE_NUMBER=9
[2025-11-24 06:30:08] Starting ATLAS job with PandaID=6895355565
[2025-11-24 06:30:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 00:58:17]  *** The last 200 lines of the pilot log: ***
[2025-11-25 00:58:17] 2025-11-25 05:57:42,934 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 00:58:17] 2025-11-25 05:57:43,088 | INFO     | time since job start (66446s) is within the limit (172800.0s)
[2025-11-25 00:58:17] 2025-11-25 05:57:43,948 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 00:58:17] 2025-11-25 05:57:43,954 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2599.8567
[2025-11-25 00:58:17] 2025-11-25 05:57:43,961 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895355565/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 00:58:17] 2025-11-25 05:57:43,962 | INFO     | extracted standard info from prmon json
[2025-11-25 00:58:17] 2025-11-25 05:57:43,962 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 00:58:17] 2025-11-25 05:57:43,962 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 00:58:17] 2025-11-25 05:57:44,011 | INFO     | fitting pss+swap vs Time
[2025-11-25 00:58:17] 2025-11-25 05:57:44,012 | INFO     | sum of square deviations: 400459700722.3049
[2025-11-25 00:58:17] 2025-11-25 05:57:44,043 | INFO     | sum of deviations: 2520065824184.8584
[2025-11-25 00:58:17] 2025-11-25 05:57:44,043 | INFO     | mean x: 1764017025.734619
[2025-11-25 00:58:17] 2025-11-25 05:57:44,043 | INFO     | mean y: 3078543.483930211
[2025-11-25 00:58:17] 2025-11-25 05:57:44,043 | INFO     | intersect: -11097761345.812904
[2025-11-25 00:58:17] 2025-11-25 05:57:44,045 | INFO     | chi2: 9.578888482611614
[2025-11-25 00:58:17] 2025-11-25 05:57:44,046 | INFO     | sum of square deviations: 394969218514.5942
[2025-11-25 00:58:17] 2025-11-25 05:57:44,077 | INFO     | sum of deviations: 2940038793864.57
[2025-11-25 00:58:17] 2025-11-25 05:57:44,077 | INFO     | mean x: 1764016873.2380073
[2025-11-25 00:58:17] 2025-11-25 05:57:44,077 | INFO     | mean y: 3090208.389298893
[2025-11-25 00:58:17] 2025-11-25 05:57:44,078 | INFO     | intersect: -13127750872.989265
[2025-11-25 00:58:17] 2025-11-25 05:57:44,079 | INFO     | chi2: 5.887027523279496
[2025-11-25 00:58:17] 2025-11-25 05:57:44,079 | INFO     | current chi2=5.887027523279496 (change=38.54164255105263 %)
[2025-11-25 00:58:17] 2025-11-25 05:57:44,081 | INFO     | sum of square deviations: 389529155856.85846
[2025-11-25 00:58:17] 2025-11-25 05:57:44,112 | INFO     | sum of deviations: 3294309887349.7017
[2025-11-25 00:58:17] 2025-11-25 05:57:44,112 | INFO     | mean x: 1764016720.7414272
[2025-11-25 00:58:17] 2025-11-25 05:57:44,112 | INFO     | mean y: 3100133.6978683965
[2025-11-25 00:58:17] 2025-11-25 05:57:44,113 | INFO     | intersect: -14915469213.969006
[2025-11-25 00:58:17] 2025-11-25 05:57:44,114 | INFO     | chi2: 3.0383081663317824
[2025-11-25 00:58:17] 2025-11-25 05:57:44,114 | INFO     | current chi2=3.0383081663317824 (change=48.38977473237246 %)
[2025-11-25 00:58:17] 2025-11-25 05:57:44,116 | INFO     | sum of square deviations: 384139148793.57263
[2025-11-25 00:58:17] 2025-11-25 05:57:44,146 | INFO     | sum of deviations: 3451859802047.7666
[2025-11-25 00:58:17] 2025-11-25 05:57:44,146 | INFO     | mean x: 1764016568.2430167
[2025-11-25 00:58:17] 2025-11-25 05:57:44,146 | INFO     | mean y: 3104589.9357541897
[2025-11-25 00:58:17] 2025-11-25 05:57:44,146 | INFO     | intersect: -15848281297.672594
[2025-11-25 00:58:17] 2025-11-25 05:57:44,148 | INFO     | chi2: 2.3496360804628087
[2025-11-25 00:58:17] 2025-11-25 05:57:44,148 | INFO     | current chi2=2.3496360804628087 (change=22.66630138115394 %)
[2025-11-25 00:58:17] 2025-11-25 05:57:44,148 | INFO     | right removable region: 1073
[2025-11-25 00:58:17] 2025-11-25 05:57:44,149 | INFO     | sum of square deviations: 394968863007.5426
[2025-11-25 00:58:17] 2025-11-25 05:57:44,180 | INFO     | sum of deviations: 2239297735765.571
[2025-11-25 00:58:17] 2025-11-25 05:57:44,181 | INFO     | mean x: 1764017178.2361624
[2025-11-25 00:58:17] 2025-11-25 05:57:44,181 | INFO     | mean y: 3086330.704797048
[2025-11-25 00:58:17] 2025-11-25 05:57:44,181 | INFO     | intersect: -9998106277.230919
[2025-11-25 00:58:17] 2025-11-25 05:57:44,183 | INFO     | chi2: 7.782672156296988
[2025-11-25 00:58:17] 2025-11-25 05:57:44,183 | INFO     | current chi2=7.782672156296988 (change=18.751824176419486 %)
[2025-11-25 00:58:17] 2025-11-25 05:57:44,183 | INFO     | left removable region: 10
[2025-11-25 00:58:17] 2025-11-25 05:57:44,184 | INFO     | sum of square deviations: 372456546852.3386
[2025-11-25 00:58:17] 2025-11-25 05:57:44,213 | INFO     | sum of deviations: 3092801214570.46
[2025-11-25 00:58:17] 2025-11-25 05:57:44,214 | INFO     | mean x: 1764016842.7403574
[2025-11-25 00:58:17] 2025-11-25 05:57:44,214 | INFO     | mean y: 3116323.215428034
[2025-11-25 00:58:17] 2025-11-25 05:57:44,214 | INFO     | intersect: -14644910352.26431
[2025-11-25 00:58:17] 2025-11-25 05:57:44,216 | INFO     | chi2: 0.3430682469535561
[2025-11-25 00:58:17] 2025-11-25 05:57:44,216 | INFO     | current memory leak: 8.30 B/s (using 1063 data points, chi2=0.34)
[2025-11-25 00:58:17] 2025-11-25 05:57:44,217 | INFO     | could have reported an average CPU frequency of 2600 MHz (40 samples)
[2025-11-25 00:58:17] 2025-11-25 05:57:44,217 | INFO     | ..............................
[2025-11-25 00:58:17] 2025-11-25 05:57:44,217 | INFO     | . Timing measurements:
[2025-11-25 00:58:17] 2025-11-25 05:57:44,217 | INFO     | . get job = 0 s
[2025-11-25 00:58:17] 2025-11-25 05:57:44,217 | INFO     | . initial setup = 1 s
[2025-11-25 00:58:17] 2025-11-25 05:57:44,218 | INFO     | . payload setup = 5 s
[2025-11-25 00:58:17] 2025-11-25 05:57:44,218 | INFO     | . stage-in = 0 s
[2025-11-25 00:58:17] 2025-11-25 05:57:44,218 | INFO     | . payload execution = 66404 s
[2025-11-25 00:58:17] 2025-11-25 05:57:44,218 | INFO     | . stage-out = 4 s
[2025-11-25 00:58:17] 2025-11-25 05:57:44,218 | INFO     | . log creation = 0 s
[2025-11-25 00:58:17] 2025-11-25 05:57:44,218 | INFO     | ..............................
[2025-11-25 00:58:17] 2025-11-25 05:57:44,736 | INFO     | 
[2025-11-25 00:58:17] 2025-11-25 05:57:44,737 | INFO     | job summary report
[2025-11-25 00:58:17] 2025-11-25 05:57:44,738 | INFO     | --------------------------------------------------
[2025-11-25 00:58:17] 2025-11-25 05:57:44,738 | INFO     | PanDA job id: 6895355565
[2025-11-25 00:58:17] 2025-11-25 05:57:44,738 | INFO     | task id: 47556137
[2025-11-25 00:58:17] 2025-11-25 05:57:44,738 | INFO     | errors: (none)
[2025-11-25 00:58:17] 2025-11-25 05:57:44,738 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 00:58:17] 2025-11-25 05:57:44,738 | INFO     | pilot state: finished 
[2025-11-25 00:58:17] 2025-11-25 05:57:44,738 | INFO     | transexitcode: 0
[2025-11-25 00:58:17] 2025-11-25 05:57:44,738 | INFO     | exeerrorcode: 0
[2025-11-25 00:58:17] 2025-11-25 05:57:44,739 | INFO     | exeerrordiag: 
[2025-11-25 00:58:17] 2025-11-25 05:57:44,739 | INFO     | exitcode: 0
[2025-11-25 00:58:17] 2025-11-25 05:57:44,739 | INFO     | exitmsg: OK
[2025-11-25 00:58:17] 2025-11-25 05:57:44,739 | INFO     | cpuconsumptiontime: 301624 s
[2025-11-25 00:58:17] 2025-11-25 05:57:44,739 | INFO     | nevents: 1000
[2025-11-25 00:58:17] 2025-11-25 05:57:44,739 | INFO     | neventsw: 0
[2025-11-25 00:58:17] 2025-11-25 05:57:44,739 | INFO     | pid: 1360605
[2025-11-25 00:58:17] 2025-11-25 05:57:44,739 | INFO     | pgrp: 1360605
[2025-11-25 00:58:17] 2025-11-25 05:57:44,739 | INFO     | corecount: 9
[2025-11-25 00:58:17] 2025-11-25 05:57:44,740 | INFO     | event service: False
[2025-11-25 00:58:17] 2025-11-25 05:57:44,740 | INFO     | sizes: {0: 2298636, 1: 2298835, 4: 2299097, 11: 2299125, 66413: 2354985, 66418: 2364770, 66421: 2364954, 66432: 2365200}
[2025-11-25 00:58:17] 2025-11-25 05:57:44,744 | INFO     | --------------------------------------------------
[2025-11-25 00:58:17] 2025-11-25 05:57:44,744 | INFO     | 
[2025-11-25 00:58:17] 2025-11-25 05:57:44,744 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-25 00:58:17] 2025-11-25 05:57:44,819 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 00:58:17] 2025-11-25 05:57:44,820 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 00:58:17] 2025-11-25 05:57:44,820 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 00:58:17] 2025-11-25 05:57:44,820 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 00:58:17] 2025-11-25 05:57:44,820 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 00:58:17] 2025-11-25 05:57:44,820 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 00:58:17] 2025-11-25 05:57:44,820 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 00:58:17] 2025-11-25 05:57:44,820 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 00:58:17] 2025-11-25 05:57:44,821 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 00:58:17] 2025-11-25 05:57:44,821 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 00:58:17] 2025-11-25 05:57:44,821 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 00:58:17] 2025-11-25 05:57:44,821 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 00:58:17] 2025-11-25 05:57:44,821 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 00:58:17] 2025-11-25 05:57:44,821 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 00:58:17] 2025-11-25 05:57:44,821 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 00:58:17] 2025-11-25 05:57:44,821 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 00:58:17] 2025-11-25 05:57:44,821 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 00:58:17] 2025-11-25 05:57:44,822 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 00:58:17] 2025-11-25 05:57:44,822 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 00:58:17] 2025-11-25 05:57:44,822 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 00:58:17] 2025-11-25 05:57:44,822 | INFO     | job 6895355565 has completed (purged errors)
[2025-11-25 00:58:17] 2025-11-25 05:57:44,822 | INFO     | overall cleanup function is called
[2025-11-25 00:58:17] 2025-11-25 05:57:45,855 | INFO     | --- collectZombieJob: --- 10, [1360605]
[2025-11-25 00:58:17] 2025-11-25 05:57:45,855 | INFO     | zombie collector waiting for pid 1360605
[2025-11-25 00:58:17] 2025-11-25 05:57:45,856 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 00:58:17] 2025-11-25 05:57:45,856 | INFO     | collected zombie processes
[2025-11-25 00:58:17] 2025-11-25 05:57:45,857 | INFO     | will attempt to kill all subprocesses of pid=1360605
[2025-11-25 00:58:17] 2025-11-25 05:57:46,325 | INFO     | process IDs to be killed: [1360605] (in reverse order)
[2025-11-25 00:58:17] 2025-11-25 05:57:46,474 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 00:58:17] 2025-11-25 05:57:46,474 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 00:58:17] 2025-11-25 05:57:46,489 | INFO     | did not find any defunct processes belonging to 1360605
[2025-11-25 00:58:17] 2025-11-25 05:57:46,502 | INFO     | did not find any defunct processes belonging to 1360605
[2025-11-25 00:58:17] 2025-11-25 05:57:46,504 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 00:58:17] 2025-11-25 05:57:46,504 | INFO     | ready for new job
[2025-11-25 00:58:17] 2025-11-25 05:57:46,504 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 00:58:17] 2025-11-25 05:57:46,509 | INFO     | ***************************************
[2025-11-25 00:58:17] 2025-11-25 05:57:46,509 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 00:58:17] 2025-11-25 05:57:46,510 | INFO     | ***************************************
[2025-11-25 00:58:17] 2025-11-25 05:57:46,510 | INFO     | 
[2025-11-25 00:58:17] 2025-11-25 05:57:46,512 | INFO     | architecture information:
[2025-11-25 00:58:17] 2025-11-25 05:57:46,512 | INFO     | executing command: cat /etc/os-release
[2025-11-25 00:58:17] 2025-11-25 05:57:46,558 | INFO     | cat /etc/os-release:
[2025-11-25 00:58:17] NAME="CentOS Linux"
[2025-11-25 00:58:17] VERSION="7 (Core)"
[2025-11-25 00:58:17] ID="centos"
[2025-11-25 00:58:17] ID_LIKE="rhel fedora"
[2025-11-25 00:58:17] VERSION_ID="7"
[2025-11-25 00:58:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 00:58:17] ANSI_COLOR="0;31"
[2025-11-25 00:58:17] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 00:58:17] HOME_URL="https://www.centos.org/"
[2025-11-25 00:58:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 00:58:17] 
[2025-11-25 00:58:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 00:58:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 00:58:17] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 00:58:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 00:58:17] 
[2025-11-25 00:58:17] 2025-11-25 05:57:46,559 | INFO     | ***************************************
[2025-11-25 00:58:17] 2025-11-25 05:57:47,062 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-25 00:58:17] 2025-11-25 05:57:47,133 | INFO     | sufficient remaining disk space (71480377344 B)
[2025-11-25 00:58:17] 2025-11-25 05:57:47,133 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 00:58:17] 2025-11-25 05:57:47,137 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 00:58:17] 2025-11-25 05:57:47,137 | INFO     | update_server=False
[2025-11-25 00:58:17] 2025-11-25 05:57:47,137 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 00:58:17] 2025-11-25 05:57:47,137 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 00:58:17] 2025-11-25 05:57:47,138 | INFO     | aborting loop
[2025-11-25 00:58:17] 2025-11-25 05:57:47,144 | INFO     | all data control threads have been joined
[2025-11-25 00:58:17] 2025-11-25 05:57:48,143 | INFO     | [job] retrieve thread has finished
[2025-11-25 00:58:17] 2025-11-25 05:57:48,144 | INFO     | [job] job monitor thread has finished
[2025-11-25 00:58:17] 2025-11-25 05:57:48,149 | INFO     | [data] control thread has finished
[2025-11-25 00:58:17] 2025-11-25 05:57:48,316 | INFO     | all job control threads have been joined
[2025-11-25 00:58:17] 2025-11-25 05:57:48,554 | INFO     | all payload control threads have been joined
[2025-11-25 00:58:17] 2025-11-25 05:57:48,561 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 00:58:17] 2025-11-25 05:57:48,605 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 00:58:17] 2025-11-25 05:57:48,657 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 00:58:17] 2025-11-25 05:57:48,711 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 00:58:17] 2025-11-25 05:57:48,739 | INFO     | [payload] validate_post thread has finished
[2025-11-25 00:58:17] 2025-11-25 05:57:48,740 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 00:58:17] 2025-11-25 05:57:48,884 | INFO     | [payload] failed_post thread has finished
[2025-11-25 00:58:17] 2025-11-25 05:57:48,912 | INFO     | [data] copytool_in thread has finished
[2025-11-25 00:58:17] 2025-11-25 05:57:49,193 | INFO     | [job] validate thread has finished
[2025-11-25 00:58:17] 2025-11-25 05:57:49,321 | INFO     | [job] control thread has finished
[2025-11-25 00:58:17] 2025-11-25 05:57:49,339 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 00:58:17] 2025-11-25 05:57:49,343 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 00:58:17] 2025-11-25 05:57:49,566 | INFO     | [payload] control thread has finished
[2025-11-25 00:58:17] 2025-11-25 05:57:50,344 | INFO     | [job] queue monitor thread has finished
[2025-11-25 00:58:17] 2025-11-25 05:57:50,612 | INFO     | [data] copytool_out thread has finished
[2025-11-25 00:58:17] 2025-11-25 05:57:52,749 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 00:58:17] 2025-11-25 05:58:10,405 | INFO     | [monitor] cgroup control has ended
[2025-11-25 00:58:17] 2025-11-25 05:58:11,396 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140523250579264)>', '<ExcThread(monitor, started 140522404443904)>']
[2025-11-25 00:58:17] 2025-11-25 05:58:16,448 | INFO     | all workflow threads have been joined
[2025-11-25 00:58:17] 2025-11-25 05:58:16,468 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 00:58:17] 2025-11-25 05:58:16,468 | INFO     | traces error code: 0
[2025-11-25 00:58:17] 2025-11-25 05:58:16,468 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 00:58:17] 2025-11-25 05:58:16,785 | INFO     | PID=1339198 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 00:58:17] 2025-11-25 05:58:16,786 | INFO     | .. there are 42 such processes running
[2025-11-25 00:58:17] 2025-11-25 05:58:16,787 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 00:58:17] 2025-11-25 05:58:16,787 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 00:58:17] 2025-11-25 05:58:16,787 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 00:58:17] 2025-11-25 05:58:16,787 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 00:58:17] 2025-11-25 05:58:16,787 | CRITICAL | thread 'MainThread' is not alive
[2025-11-25 00:58:17] 2025-11-25 05:58:16,787 | INFO     | [monitor] control thread has ended
[2025-11-25 00:58:17] 2025-11-25 05:58:16,979 [wrapper] ==== pilot stdout END ====
[2025-11-25 00:58:17] 2025-11-25 05:58:16,984 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 00:58:17] 2025-11-25 05:58:16,988 [wrapper] pilotpid: 1339198
[2025-11-25 00:58:17] 2025-11-25 05:58:16,991 [wrapper] Pilot exit status: 0
[2025-11-25 00:58:17] 2025-11-25 05:58:17,007 [wrapper] pandaids: 6895355565 6895355565
[2025-11-25 00:58:17] 2025-11-25 05:58:17,107 [wrapper] cleanup supervisor_pilot  316302 1339199
[2025-11-25 00:58:17] 2025-11-25 05:58:17,110 [wrapper] Test setup, not cleaning
[2025-11-25 00:58:17] 2025-11-25 05:58:17,114 [wrapper] apfmon messages muted
[2025-11-25 00:58:17] 2025-11-25 05:58:17,116 [wrapper] ==== wrapper stdout END ====
[2025-11-25 00:58:17] 2025-11-25 05:58:17,119 [wrapper] ==== wrapper stderr END ====
[2025-11-25 00:58:17]  *** Error codes and diagnostics ***
[2025-11-25 00:58:17]     "exeErrorCode": 0,
[2025-11-25 00:58:17]     "exeErrorDiag": "",
[2025-11-25 00:58:17]     "pilotErrorCode": 0,
[2025-11-25 00:58:17]     "pilotErrorDiag": "",
[2025-11-25 00:58:17]  *** Listing of results directory ***
[2025-11-25 00:58:17] total 1725372
[2025-11-25 00:58:17] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-25 00:58:17] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 02:49 pilot3.tar.gz
[2025-11-25 00:58:17] -rwx------. 1 boincer umatlas     36292 Nov 23 03:01 runpilot2-wrapper.sh
[2025-11-25 00:58:17] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 03:01 queuedata.json
[2025-11-25 00:58:17] -rw-r--r--. 1 boincer umatlas       100 Nov 24 05:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 00:58:17] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 05:12 run_atlas
[2025-11-25 00:58:17] -rw-r--r--. 1 boincer umatlas       105 Nov 24 05:12 job.xml
[2025-11-25 00:58:17] -rw-r--r--. 3 boincer umatlas 412027548 Nov 24 05:12 EVNT.47483658._000666.pool.root.1
[2025-11-25 00:58:17] -rw-r--r--. 3 boincer umatlas 412027548 Nov 24 05:12 ATLAS.root_0
[2025-11-25 00:58:17] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 05:12 start_atlas.sh
[2025-11-25 00:58:17] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 05:12 shared
[2025-11-25 00:58:17] -rw-r--r--. 2 boincer umatlas    590094 Nov 24 05:12 input.tar.gz
[2025-11-25 00:58:17] -rw-r--r--. 1 boincer umatlas         0 Nov 24 05:12 boinc_lockfile
[2025-11-25 00:58:17] -rw-r--r--. 1 boincer umatlas      2786 Nov 24 06:30 pandaJob.out
[2025-11-25 00:58:17] -rw-------. 1 boincer umatlas        57 Nov 24 06:30 setup.sh.local
[2025-11-25 00:58:17] -rw-------. 1 boincer umatlas    989803 Nov 24 06:30 agis_schedconf.cvmfs.json
[2025-11-25 00:58:17] -rw-r--r--. 1 boincer umatlas       533 Nov 25 00:36 boinc_task_state.xml
[2025-11-25 00:58:17] -rw-------. 1 boincer umatlas 915800336 Nov 25 00:56 HITS.47556137._006617.pool.root.1
[2025-11-25 00:58:17] -rw-------. 1 boincer umatlas      1066 Nov 25 00:57 memory_monitor_summary.json
[2025-11-25 00:58:17] -rw-------. 1 boincer umatlas   1516227 Nov 25 00:57 agis_ddmendpoints.agis.ALL.json
[2025-11-25 00:58:17] -rw-------. 1 boincer umatlas   2369804 Nov 25 00:57 log.47556137._006617.job.log.tgz.1
[2025-11-25 00:58:17] -rw-------. 1 boincer umatlas      8629 Nov 25 00:57 heartbeat.json
[2025-11-25 00:58:17] -rw-r--r--. 1 boincer umatlas      6660 Nov 25 00:57 init_data.xml
[2025-11-25 00:58:17] -rw-r--r--. 1 boincer umatlas        29 Nov 25 00:58 wrapper_checkpoint.txt
[2025-11-25 00:58:17] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 00:58 boinc_mmap_file
[2025-11-25 00:58:17] -rw-------. 1 boincer umatlas        96 Nov 25 00:58 pilot_heartbeat.json
[2025-11-25 00:58:17] -rw-------. 1 boincer umatlas       893 Nov 25 00:58 pilotlog.txt
[2025-11-25 00:58:17] -rw-------. 1 boincer umatlas   9131183 Nov 25 00:58 log.47556137._006617.job.log.1
[2025-11-25 00:58:17] -rw-------. 1 boincer umatlas       353 Nov 25 00:58 output.list
[2025-11-25 00:58:17] -rw-r--r--. 1 boincer umatlas       620 Nov 25 00:58 runtime_log
[2025-11-25 00:58:17] -rw-------. 1 boincer umatlas  11520000 Nov 25 00:58 result.tar.gz
[2025-11-25 00:58:17] -rw-r--r--. 1 boincer umatlas      9418 Nov 25 00:58 runtime_log.err
[2025-11-25 00:58:17] -rw-------. 1 boincer umatlas       788 Nov 25 00:58 5GfLDmADKh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmuTIKDmpWZahn.diag
[2025-11-25 00:58:17] -rw-r--r--. 1 boincer umatlas     23468 Nov 25 00:58 stderr.txt
[2025-11-25 00:58:17] HITS file was successfully produced:
[2025-11-25 00:58:17] -rw-------. 1 boincer umatlas 915800336 Nov 25 00:56 shared/HITS.pool.root.1
[2025-11-25 00:58:17]  *** Contents of shared directory: ***
[2025-11-25 00:58:17] total 1308568
[2025-11-25 00:58:17] -rw-r--r--. 3 boincer umatlas 412027548 Nov 24 05:12 ATLAS.root_0
[2025-11-25 00:58:17] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 05:12 start_atlas.sh
[2025-11-25 00:58:17] -rw-r--r--. 2 boincer umatlas    590094 Nov 24 05:12 input.tar.gz
[2025-11-25 00:58:17] -rw-------. 1 boincer umatlas 915800336 Nov 25 00:56 HITS.pool.root.1
[2025-11-25 00:58:17] -rw-------. 1 boincer umatlas  11520000 Nov 25 00:58 result.tar.gz
00:58:18 (1327920): run_atlas exited; CPU time 302446.053478
00:58:18 (1327920): called boinc_finish(0)

</stderr_txt>
]]>

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