Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:24:13 (1217719): wrapper (7.7.26015): starting
15:24:13 (1217719): wrapper: running run_atlas (--nthreads 12)
[2025-11-24 15:24:13] Arguments: --nthreads 12
[2025-11-24 15:24:13] Threads: 12
[2025-11-24 15:24:13] Checking for CVMFS
[2025-11-24 15:24:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 15:24:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 15:24:14] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 15:24:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 15:24:14] 2.13.3.0 9060 23583 387908 153248 3 90 25070473 46080001 7012 130560 0 131330541 99.877 44987071 26070 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2025-11-24 15:24:14] CVMFS is ok
[2025-11-24 15:24:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 15:24:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 15:24:14] Further information can be found at the LHC@home message board.
[2025-11-24 15:24:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 15:24:14] Checking for apptainer binary...
[2025-11-24 15:24:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 15:24:14] Running /usr/bin/apptainer --version
[2025-11-24 15:24:14] apptainer version 1.4.3-1.el9
[2025-11-24 15:24:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 15:24:14] mff2104.farm.particle.cz
[2025-11-24 15:24:14] apptainer works
[2025-11-24 15:24:14] Set ATHENA_PROC_NUMBER=12
[2025-11-24 15:24:14] Set ATHENA_CORE_NUMBER=12
[2025-11-24 15:24:14] Starting ATLAS job with PandaID=6894266420
[2025-11-24 15:24:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/scratch/.boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 20:54:21]  *** The last 200 lines of the pilot log: ***
[2025-11-24 20:54:21] 2025-11-24 19:53:46,664 | INFO     | PID=1221780 has CPU usage=18.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-24 20:54:21] 2025-11-24 19:53:46,664 | INFO     | .. there are 8 such processes running
[2025-11-24 20:54:21] 2025-11-24 19:53:47,665 | INFO     | time since job start (19761s) is within the limit (172800.0s)
[2025-11-24 20:54:21] 2025-11-24 19:53:48,356 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-24 20:54:21] 2025-11-24 19:53:48,371 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2731.0113854166666
[2025-11-24 20:54:21] 2025-11-24 19:53:48,389 | INFO     | using path: /scratch/.boinc/slots/1/PanDA_Pilot-6894266420/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 20:54:21] 2025-11-24 19:53:48,390 | INFO     | extracted standard info from prmon json
[2025-11-24 20:54:21] 2025-11-24 19:53:48,390 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 20:54:21] 2025-11-24 19:53:48,390 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 20:54:21] 2025-11-24 19:53:48,396 | INFO     | fitting pss+swap vs Time
[2025-11-24 20:54:21] 2025-11-24 19:53:48,397 | INFO     | sum of square deviations: 10546486310.972229
[2025-11-24 20:54:21] 2025-11-24 19:53:48,399 | INFO     | sum of deviations: 214275246119.9997
[2025-11-24 20:54:21] 2025-11-24 19:53:48,400 | INFO     | mean x: 1764004148.4907408
[2025-11-24 20:54:21] 2025-11-24 19:53:48,400 | INFO     | mean y: 3445863.6666666665
[2025-11-24 20:54:21] 2025-11-24 19:53:48,400 | INFO     | intersect: -35836208399.318825
[2025-11-24 20:54:21] 2025-11-24 19:53:48,400 | INFO     | chi2: 5.541308716162145
[2025-11-24 20:54:21] 2025-11-24 19:53:48,401 | INFO     | sum of square deviations: 10065812405.987461
[2025-11-24 20:54:21] 2025-11-24 19:53:48,404 | INFO     | sum of deviations: 340533251209.16644
[2025-11-24 20:54:21] 2025-11-24 19:53:48,404 | INFO     | mean x: 1764003996.0062697
[2025-11-24 20:54:21] 2025-11-24 19:53:48,404 | INFO     | mean y: 3485834.4169278997
[2025-11-24 20:54:21] 2025-11-24 19:53:48,404 | INFO     | intersect: -59673964099.84373
[2025-11-24 20:54:21] 2025-11-24 19:53:48,404 | INFO     | chi2: 2.2781060255090186
[2025-11-24 20:54:21] 2025-11-24 19:53:48,404 | INFO     | current chi2=2.2781060255090186 (change=58.888664353520944 %)
[2025-11-24 20:54:21] 2025-11-24 19:53:48,405 | INFO     | sum of square deviations: 9599878698.48726
[2025-11-24 20:54:21] 2025-11-24 19:53:48,408 | INFO     | sum of deviations: 338776799169.6785
[2025-11-24 20:54:21] 2025-11-24 19:53:48,408 | INFO     | mean x: 1764003843.5063694
[2025-11-24 20:54:21] 2025-11-24 19:53:48,408 | INFO     | mean y: 3485231.4108280255
[2025-11-24 20:54:21] 2025-11-24 19:53:48,408 | INFO     | intersect: -62247673829.616486
[2025-11-24 20:54:21] 2025-11-24 19:53:48,408 | INFO     | chi2: 2.23849781812995
[2025-11-24 20:54:21] 2025-11-24 19:53:48,409 | INFO     | current chi2=2.23849781812995 (change=1.7386463551545372 %)
[2025-11-24 20:54:21] 2025-11-24 19:53:48,409 | INFO     | right removable region: 313
[2025-11-24 20:54:21] 2025-11-24 19:53:48,409 | INFO     | sum of square deviations: 10065655760.0
[2025-11-24 20:54:21] 2025-11-24 19:53:48,412 | INFO     | sum of deviations: 114422407134.99997
[2025-11-24 20:54:21] 2025-11-24 19:53:48,412 | INFO     | mean x: 1764004301.0
[2025-11-24 20:54:21] 2025-11-24 19:53:48,412 | INFO     | mean y: 3477392.605015674
[2025-11-24 20:54:21] 2025-11-24 19:53:48,412 | INFO     | intersect: -20049028189.69527
[2025-11-24 20:54:21] 2025-11-24 19:53:48,413 | INFO     | chi2: 3.4476820466614373
[2025-11-24 20:54:21] 2025-11-24 19:53:48,413 | INFO     | current chi2=3.4476820466614373 (change=37.782169821982635 %)
[2025-11-24 20:54:21] 2025-11-24 19:53:48,413 | INFO     | sum of square deviations: 9599721442.5
[2025-11-24 20:54:21] 2025-11-24 19:53:48,416 | INFO     | sum of deviations: 89865386303.0001
[2025-11-24 20:54:21] 2025-11-24 19:53:48,416 | INFO     | mean x: 1764004453.5
[2025-11-24 20:54:21] 2025-11-24 19:53:48,416 | INFO     | mean y: 3485416.414012739
[2025-11-24 20:54:21] 2025-11-24 19:53:48,416 | INFO     | intersect: -16509800162.079489
[2025-11-24 20:54:21] 2025-11-24 19:53:48,416 | INFO     | chi2: 3.393902156541227
[2025-11-24 20:54:21] 2025-11-24 19:53:48,417 | INFO     | current chi2=3.393902156541227 (change=1.5598854358477807 %)
[2025-11-24 20:54:21] 2025-11-24 19:53:48,417 | INFO     | left removable region: 20
[2025-11-24 20:54:21] 2025-11-24 19:53:48,417 | INFO     | sum of square deviations: 7799668746.914691
[2025-11-24 20:54:21] 2025-11-24 19:53:48,419 | INFO     | sum of deviations: 181434599394.8156
[2025-11-24 20:54:21] 2025-11-24 19:53:48,419 | INFO     | mean x: 1764004423.0170648
[2025-11-24 20:54:21] 2025-11-24 19:53:48,420 | INFO     | mean y: 3538361.4368600682
[2025-11-24 20:54:21] 2025-11-24 19:53:48,420 | INFO     | intersect: -41030439645.30689
[2025-11-24 20:54:21] 2025-11-24 19:53:48,420 | INFO     | chi2: 0.01869007445199137
[2025-11-24 20:54:21] 2025-11-24 19:53:48,420 | INFO     | current memory leak: 23.26 B/s (using 293 data points, chi2=0.02)
[2025-11-24 20:54:21] 2025-11-24 19:53:48,421 | INFO     | could have reported an average CPU frequency of 2732 MHz (14 samples)
[2025-11-24 20:54:21] 2025-11-24 19:53:48,421 | INFO     | ..............................
[2025-11-24 20:54:21] 2025-11-24 19:53:48,421 | INFO     | . Timing measurements:
[2025-11-24 20:54:21] 2025-11-24 19:53:48,421 | INFO     | . get job = 0 s
[2025-11-24 20:54:21] 2025-11-24 19:53:48,421 | INFO     | . initial setup = 1 s
[2025-11-24 20:54:21] 2025-11-24 19:53:48,421 | INFO     | . payload setup = 7 s
[2025-11-24 20:54:21] 2025-11-24 19:53:48,422 | INFO     | . stage-in = 0 s
[2025-11-24 20:54:21] 2025-11-24 19:53:48,422 | INFO     | . payload execution = 19724 s
[2025-11-24 20:54:21] 2025-11-24 19:53:48,422 | INFO     | . stage-out = 2 s
[2025-11-24 20:54:21] 2025-11-24 19:53:48,422 | INFO     | . log creation = 0 s
[2025-11-24 20:54:21] 2025-11-24 19:53:48,422 | INFO     | ..............................
[2025-11-24 20:54:21] 2025-11-24 19:53:48,517 | INFO     | 
[2025-11-24 20:54:21] 2025-11-24 19:53:48,518 | INFO     | job summary report
[2025-11-24 20:54:21] 2025-11-24 19:53:48,518 | INFO     | --------------------------------------------------
[2025-11-24 20:54:21] 2025-11-24 19:53:48,518 | INFO     | PanDA job id: 6894266420
[2025-11-24 20:54:21] 2025-11-24 19:53:48,518 | INFO     | task id: 47533967
[2025-11-24 20:54:21] 2025-11-24 19:53:48,518 | INFO     | errors: (none)
[2025-11-24 20:54:21] 2025-11-24 19:53:48,518 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 20:54:21] 2025-11-24 19:53:48,518 | INFO     | pilot state: finished 
[2025-11-24 20:54:21] 2025-11-24 19:53:48,518 | INFO     | transexitcode: 0
[2025-11-24 20:54:21] 2025-11-24 19:53:48,518 | INFO     | exeerrorcode: 0
[2025-11-24 20:54:21] 2025-11-24 19:53:48,519 | INFO     | exeerrordiag: 
[2025-11-24 20:54:21] 2025-11-24 19:53:48,519 | INFO     | exitcode: 0
[2025-11-24 20:54:21] 2025-11-24 19:53:48,519 | INFO     | exitmsg: OK
[2025-11-24 20:54:21] 2025-11-24 19:53:48,519 | INFO     | cpuconsumptiontime: 226853 s
[2025-11-24 20:54:21] 2025-11-24 19:53:48,519 | INFO     | nevents: 1000
[2025-11-24 20:54:21] 2025-11-24 19:53:48,519 | INFO     | neventsw: 0
[2025-11-24 20:54:21] 2025-11-24 19:53:48,519 | INFO     | pid: 1228869
[2025-11-24 20:54:21] 2025-11-24 19:53:48,519 | INFO     | pgrp: 1228869
[2025-11-24 20:54:21] 2025-11-24 19:53:48,519 | INFO     | corecount: 12
[2025-11-24 20:54:21] 2025-11-24 19:53:48,519 | INFO     | event service: False
[2025-11-24 20:54:21] 2025-11-24 19:53:48,519 | INFO     | sizes: {0: 2284084, 1: 2284339, 6: 2284601, 12: 2284629, 19734: 2319087, 19735: 2319086, 19738: 2328322, 19745: 2328512}
[2025-11-24 20:54:21] 2025-11-24 19:53:48,519 | INFO     | --------------------------------------------------
[2025-11-24 20:54:21] 2025-11-24 19:53:48,520 | INFO     | 
[2025-11-24 20:54:21] 2025-11-24 19:53:48,520 | INFO     | executing command: ls -lF /scratch/.boinc/slots/1
[2025-11-24 20:54:21] 2025-11-24 19:53:48,548 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 20:54:21] 2025-11-24 19:53:48,548 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 20:54:21] 2025-11-24 19:53:48,548 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 20:54:21] 2025-11-24 19:53:48,549 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 20:54:21] 2025-11-24 19:53:48,549 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 20:54:21] 2025-11-24 19:53:48,549 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 20:54:21] 2025-11-24 19:53:48,549 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 20:54:21] 2025-11-24 19:53:48,549 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 20:54:21] 2025-11-24 19:53:48,549 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 20:54:21] 2025-11-24 19:53:48,549 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 20:54:21] 2025-11-24 19:53:48,549 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 20:54:21] 2025-11-24 19:53:48,549 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 20:54:21] 2025-11-24 19:53:48,549 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 20:54:21] 2025-11-24 19:53:48,549 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 20:54:21] 2025-11-24 19:53:48,549 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 20:54:21] 2025-11-24 19:53:48,549 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 20:54:21] 2025-11-24 19:53:48,550 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 20:54:21] 2025-11-24 19:53:48,550 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 20:54:21] 2025-11-24 19:53:48,550 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 20:54:21] 2025-11-24 19:53:48,550 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 20:54:21] 2025-11-24 19:53:48,550 | INFO     | job 6894266420 has completed (purged errors)
[2025-11-24 20:54:21] 2025-11-24 19:53:48,550 | INFO     | overall cleanup function is called
[2025-11-24 20:54:21] 2025-11-24 19:53:49,574 | INFO     | --- collectZombieJob: --- 10, [1228869]
[2025-11-24 20:54:21] 2025-11-24 19:53:49,574 | INFO     | zombie collector waiting for pid 1228869
[2025-11-24 20:54:21] 2025-11-24 19:53:49,574 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 20:54:21] 2025-11-24 19:53:49,574 | INFO     | collected zombie processes
[2025-11-24 20:54:21] 2025-11-24 19:53:49,574 | INFO     | will attempt to kill all subprocesses of pid=1228869
[2025-11-24 20:54:21] 2025-11-24 19:53:49,937 | INFO     | process IDs to be killed: [1228869] (in reverse order)
[2025-11-24 20:54:21] 2025-11-24 19:53:50,060 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 20:54:21] 2025-11-24 19:53:50,061 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 20:54:21] 2025-11-24 19:53:50,074 | INFO     | did not find any defunct processes belonging to 1228869
[2025-11-24 20:54:21] 2025-11-24 19:53:50,085 | INFO     | did not find any defunct processes belonging to 1228869
[2025-11-24 20:54:21] 2025-11-24 19:53:50,086 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 20:54:21] 2025-11-24 19:53:50,086 | INFO     | ready for new job
[2025-11-24 20:54:21] 2025-11-24 19:53:50,087 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 20:54:21] 2025-11-24 19:53:50,090 | INFO     | ***************************************
[2025-11-24 20:54:21] 2025-11-24 19:53:50,090 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 20:54:21] 2025-11-24 19:53:50,090 | INFO     | ***************************************
[2025-11-24 20:54:21] 2025-11-24 19:53:50,090 | INFO     | 
[2025-11-24 20:54:21] 2025-11-24 19:53:50,096 | INFO     | architecture information:
[2025-11-24 20:54:21] 2025-11-24 19:53:50,097 | INFO     | executing command: cat /etc/os-release
[2025-11-24 20:54:21] 2025-11-24 19:53:50,120 | INFO     | cat /etc/os-release:
[2025-11-24 20:54:21] NAME="CentOS Linux"
[2025-11-24 20:54:21] VERSION="7 (Core)"
[2025-11-24 20:54:21] ID="centos"
[2025-11-24 20:54:21] ID_LIKE="rhel fedora"
[2025-11-24 20:54:21] VERSION_ID="7"
[2025-11-24 20:54:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 20:54:21] ANSI_COLOR="0;31"
[2025-11-24 20:54:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 20:54:21] HOME_URL="https://www.centos.org/"
[2025-11-24 20:54:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 20:54:21] 
[2025-11-24 20:54:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 20:54:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 20:54:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 20:54:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 20:54:21] 
[2025-11-24 20:54:21] 2025-11-24 19:53:50,121 | INFO     | ***************************************
[2025-11-24 20:54:21] 2025-11-24 19:53:50,623 | INFO     | executing command: df -mP /scratch/.boinc/slots/1
[2025-11-24 20:54:21] 2025-11-24 19:53:50,646 | INFO     | sufficient remaining disk space (1674477305856 B)
[2025-11-24 20:54:21] 2025-11-24 19:53:50,647 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 20:54:21] 2025-11-24 19:53:50,647 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 20:54:21] 2025-11-24 19:53:50,647 | INFO     | update_server=False
[2025-11-24 20:54:21] 2025-11-24 19:53:50,647 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 20:54:21] 2025-11-24 19:53:50,647 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 20:54:21] 2025-11-24 19:53:50,648 | INFO     | aborting loop
[2025-11-24 20:54:21] 2025-11-24 19:53:51,227 | INFO     | all data control threads have been joined
[2025-11-24 20:54:21] 2025-11-24 19:53:51,650 | INFO     | [job] retrieve thread has finished
[2025-11-24 20:54:21] 2025-11-24 19:53:51,653 | INFO     | [job] job monitor thread has finished
[2025-11-24 20:54:21] 2025-11-24 19:53:51,661 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 20:54:21] 2025-11-24 19:53:51,815 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 20:54:21] 2025-11-24 19:53:51,845 | INFO     | all payload control threads have been joined
[2025-11-24 20:54:21] 2025-11-24 19:53:51,907 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 20:54:21] 2025-11-24 19:53:52,222 | INFO     | [job] validate thread has finished
[2025-11-24 20:54:21] 2025-11-24 19:53:52,232 | INFO     | [data] control thread has finished
[2025-11-24 20:54:21] 2025-11-24 19:53:52,285 | INFO     | all job control threads have been joined
[2025-11-24 20:54:21] 2025-11-24 19:53:52,305 | INFO     | [payload] validate_post thread has finished
[2025-11-24 20:54:21] 2025-11-24 19:53:52,371 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 20:54:21] 2025-11-24 19:53:52,614 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 20:54:21] 2025-11-24 19:53:52,615 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 20:54:21] 2025-11-24 19:53:52,815 | INFO     | [data] copytool_in thread has finished
[2025-11-24 20:54:21] 2025-11-24 19:53:52,850 | INFO     | [payload] control thread has finished
[2025-11-24 20:54:21] 2025-11-24 19:53:53,048 | INFO     | [payload] failed_post thread has finished
[2025-11-24 20:54:21] 2025-11-24 19:53:53,290 | INFO     | [job] control thread has finished
[2025-11-24 20:54:21] 2025-11-24 19:53:53,529 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 20:54:21] 2025-11-24 19:53:53,821 | INFO     | [data] copytool_out thread has finished
[2025-11-24 20:54:21] 2025-11-24 19:53:54,534 | INFO     | [job] queue monitor thread has finished
[2025-11-24 20:54:21] 2025-11-24 19:53:55,910 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 20:54:21] 2025-11-24 19:53:59,212 | INFO     | [monitor] cgroup control has ended
[2025-11-24 20:54:21] 2025-11-24 19:53:59,856 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140202872534848)>', '<ExcThread(monitor, started 140202521634560)>']
[2025-11-24 20:54:21] 2025-11-24 19:54:04,882 | INFO     | all workflow threads have been joined
[2025-11-24 20:54:21] 2025-11-24 19:54:04,882 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 20:54:21] 2025-11-24 19:54:04,882 | INFO     | traces error code: 0
[2025-11-24 20:54:21] 2025-11-24 19:54:04,882 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 20:54:21] 2025-11-24 19:54:21,230 | INFO     | PID=1221780 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 20:54:21] 2025-11-24 19:54:21,231 | INFO     | .. there are 8 such processes running
[2025-11-24 20:54:21] 2025-11-24 19:54:21,232 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 20:54:21] 2025-11-24 19:54:21,232 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 20:54:21] 2025-11-24 19:54:21,232 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 20:54:21] 2025-11-24 19:54:21,232 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 20:54:21] 2025-11-24 19:54:21,232 | INFO     | [monitor] control thread has ended
[2025-11-24 20:54:21] 2025-11-24 19:54:21,370 [wrapper] ==== pilot stdout END ====
[2025-11-24 20:54:21] 2025-11-24 19:54:21,372 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 20:54:21] 2025-11-24 19:54:21,375 [wrapper] pilotpid: 1221780
[2025-11-24 20:54:21] 2025-11-24 19:54:21,377 [wrapper] Pilot exit status: 0
[2025-11-24 20:54:21] 2025-11-24 19:54:21,390 [wrapper] pandaids: 6894266420
[2025-11-24 20:54:21] 2025-11-24 19:54:21,472 [wrapper] cleanup supervisor_pilot 1661135 1221781
[2025-11-24 20:54:21] 2025-11-24 19:54:21,476 [wrapper] Test setup, not cleaning
[2025-11-24 20:54:21] 2025-11-24 19:54:21,480 [wrapper] apfmon messages muted
[2025-11-24 20:54:21] 2025-11-24 19:54:21,483 [wrapper] ==== wrapper stdout END ====
[2025-11-24 20:54:21] 2025-11-24 19:54:21,487 [wrapper] ==== wrapper stderr END ====
[2025-11-24 20:54:21]  *** Error codes and diagnostics ***
[2025-11-24 20:54:21]     "exeErrorCode": 0,
[2025-11-24 20:54:21]     "exeErrorDiag": "",
[2025-11-24 20:54:21]     "pilotErrorCode": 0,
[2025-11-24 20:54:21]     "pilotErrorDiag": "",
[2025-11-24 20:54:21]  *** Listing of results directory ***
[2025-11-24 20:54:21] total 1314428
[2025-11-24 20:54:21] -rw-r--r-- 1 boinc boinc    576529 Nov 21 06:09 pilot3.tar.gz
[2025-11-24 20:54:21] -rw-r--r-- 1 boinc boinc      5112 Nov 21 06:15 queuedata.json
[2025-11-24 20:54:21] -rwx------ 1 boinc boinc     36292 Nov 21 06:15 runpilot2-wrapper.sh
[2025-11-24 20:54:21] -rw-r--r-- 1 boinc boinc       100 Nov 24 15:24 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 20:54:21] -rwxr-xr-x 1 boinc boinc      7986 Nov 24 15:24 run_atlas
[2025-11-24 20:54:21] -rw-r--r-- 1 boinc boinc       105 Nov 24 15:24 job.xml
[2025-11-24 20:54:21] -rw-r--r-- 1 boinc boinc      6665 Nov 24 15:24 init_data.xml
[2025-11-24 20:54:21] -rw-r--r-- 2 boinc boinc 412626095 Nov 24 15:24 EVNT.47493127._002233.pool.root.1
[2025-11-24 20:54:21] -rw-r--r-- 2 boinc boinc     15847 Nov 24 15:24 start_atlas.sh
[2025-11-24 20:54:21] drwxrwx--x 2 boinc boinc      4096 Nov 24 15:24 shared
[2025-11-24 20:54:21] -rw-r--r-- 2 boinc boinc    590106 Nov 24 15:24 input.tar.gz
[2025-11-24 20:54:21] -rw-r--r-- 1 boinc boinc         0 Nov 24 15:24 boinc_lockfile
[2025-11-24 20:54:21] -rw-r--r-- 1 boinc boinc      2786 Nov 24 15:24 pandaJob.out
[2025-11-24 20:54:21] -rw------- 1 boinc boinc    988283 Nov 24 15:24 agis_schedconf.cvmfs.json
[2025-11-24 20:54:21] drwx------ 5 boinc boinc      4096 Nov 24 15:24 pilot3
[2025-11-24 20:54:21] -rw-r--r-- 1 boinc boinc       533 Nov 24 20:46 boinc_task_state.xml
[2025-11-24 20:54:21] -rw------- 1 boinc boinc 919765911 Nov 24 20:53 HITS.47533967._002044.pool.root.1
[2025-11-24 20:54:21] -rw------- 1 boinc boinc        95 Nov 24 20:53 pilot_heartbeat.json
[2025-11-24 20:54:21] -rw------- 1 boinc boinc      1034 Nov 24 20:53 memory_monitor_summary.json
[2025-11-24 20:54:21] -rw------- 1 boinc boinc   1516227 Nov 24 20:53 agis_ddmendpoints.agis.ALL.json
[2025-11-24 20:54:21] -rw------- 1 boinc boinc   2075784 Nov 24 20:53 log.47533967._002044.job.log.tgz.1
[2025-11-24 20:54:21] -rw------- 1 boinc boinc      8601 Nov 24 20:53 heartbeat.json
[2025-11-24 20:54:21] -rw-r--r-- 1 boinc boinc      8192 Nov 24 20:54 boinc_mmap_file
[2025-11-24 20:54:21] -rw-r--r-- 1 boinc boinc        29 Nov 24 20:54 wrapper_checkpoint.txt
[2025-11-24 20:54:21] -rw------- 1 boinc boinc       822 Nov 24 20:54 pilotlog.txt
[2025-11-24 20:54:21] -rw------- 1 boinc boinc   2761999 Nov 24 20:54 log.47533967._002044.job.log.1
[2025-11-24 20:54:21] -rw------- 1 boinc boinc       353 Nov 24 20:54 output.list
[2025-11-24 20:54:21] -rw-r--r-- 1 boinc boinc       620 Nov 24 20:54 runtime_log
[2025-11-24 20:54:21] -rw------- 1 boinc boinc   4853760 Nov 24 20:54 result.tar.gz
[2025-11-24 20:54:21] -rw-r--r-- 1 boinc boinc      8881 Nov 24 20:54 runtime_log.err
[2025-11-24 20:54:21] -rw------- 1 boinc boinc       671 Nov 24 20:54 3KsKDmjfYg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmMMHKDmoB98Tm.diag
[2025-11-24 20:54:21] -rw-r--r-- 1 boinc boinc     21403 Nov 24 20:54 stderr.txt
[2025-11-24 20:54:21] HITS file was successfully produced:
[2025-11-24 20:54:21] -rw------- 1 boinc boinc 919765911 Nov 24 20:53 shared/HITS.pool.root.1
[2025-11-24 20:54:21]  *** Contents of shared directory: ***
[2025-11-24 20:54:21] total 1306512
[2025-11-24 20:54:21] -rw-r--r-- 2 boinc boinc 412626095 Nov 24 15:24 ATLAS.root_0
[2025-11-24 20:54:21] -rw-r--r-- 2 boinc boinc     15847 Nov 24 15:24 start_atlas.sh
[2025-11-24 20:54:21] -rw-r--r-- 2 boinc boinc    590106 Nov 24 15:24 input.tar.gz
[2025-11-24 20:54:21] -rw------- 1 boinc boinc 919765911 Nov 24 20:53 HITS.pool.root.1
[2025-11-24 20:54:21] -rw------- 1 boinc boinc   4853760 Nov 24 20:54 result.tar.gz
20:54:22 (1217719): run_atlas exited; CPU time 226826.638206
20:54:22 (1217719): called boinc_finish(0)

</stderr_txt>
]]>

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