Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:02:36 (2440183): wrapper (7.7.26015): starting
00:02:36 (2440183): wrapper: running run_atlas (--nthreads 12)
[2025-11-24 00:02:36] Arguments: --nthreads 12
[2025-11-24 00:02:36] Threads: 12
[2025-11-24 00:02:36] Checking for CVMFS
[2025-11-24 00:02:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 00:02:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 00:02:37] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 00:02:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 00:02:39] 2.13.2.0 11666 31078 282760 153233 3 163 34922239 40960001 19046 16776704 0 50177014 99.784 24736650 35836 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-24 00:02:39] CVMFS is ok
[2025-11-24 00:02:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 00:02:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 00:02:39] Further information can be found at the LHC@home message board.
[2025-11-24 00:02:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 00:02:39] Checking for apptainer binary...
[2025-11-24 00:02:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 00:02:39] Running /usr/bin/apptainer --version
[2025-11-24 00:02:39] apptainer version 1.4.4-1.el9
[2025-11-24 00:02:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 00:02:40] c-211-33-2.aglt2.org
[2025-11-24 00:02:40] apptainer works
[2025-11-24 00:02:40] Set ATHENA_PROC_NUMBER=12
[2025-11-24 00:02:40] Set ATHENA_CORE_NUMBER=12
[2025-11-24 00:02:40] Starting ATLAS job with PandaID=6895355363
[2025-11-24 00:02:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 12:22:12]  *** The last 200 lines of the pilot log: ***
[2025-11-25 12:22:12] 2025-11-25 17:21:23,617 | INFO     | monitor loop #7623: job 0:6895355363 is in state 'finished'
[2025-11-25 12:22:12] 2025-11-25 17:21:23,617 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 12:22:12] 2025-11-25 17:21:24,757 | INFO     | time since job start (130644s) is within the limit (172800.0s)
[2025-11-25 12:22:12] 2025-11-25 17:21:26,122 | INFO     | monitor loop #7624: job 0:6895355363 is in state 'finished'
[2025-11-25 12:22:12] 2025-11-25 17:21:26,122 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 12:22:12] 2025-11-25 17:21:26,764 | INFO     | time since job start (130646s) is within the limit (172800.0s)
[2025-11-25 12:22:12] 2025-11-25 17:21:28,630 | INFO     | monitor loop #7625: job 0:6895355363 is in state 'finished'
[2025-11-25 12:22:12] 2025-11-25 17:21:28,630 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 12:22:12] 2025-11-25 17:21:28,774 | INFO     | time since job start (130648s) is within the limit (172800.0s)
[2025-11-25 12:22:12] 2025-11-25 17:21:30,781 | INFO     | time since job start (130650s) is within the limit (172800.0s)
[2025-11-25 12:22:12] 2025-11-25 17:21:31,136 | INFO     | monitor loop #7626: job 0:6895355363 is in state 'finished'
[2025-11-25 12:22:12] 2025-11-25 17:21:31,136 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 12:22:12] 2025-11-25 17:21:32,795 | INFO     | time since job start (130652s) is within the limit (172800.0s)
[2025-11-25 12:22:12] 2025-11-25 17:21:33,646 | INFO     | monitor loop #7627: job 0:6895355363 is in state 'finished'
[2025-11-25 12:22:12] 2025-11-25 17:21:33,646 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 12:22:12] 2025-11-25 17:21:34,097 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-25 12:22:12] 2025-11-25 17:21:34,135 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2536.668302083334
[2025-11-25 12:22:12] 2025-11-25 17:21:34,159 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6895355363/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 12:22:12] 2025-11-25 17:21:34,160 | INFO     | extracted standard info from prmon json
[2025-11-25 12:22:12] 2025-11-25 17:21:34,164 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 12:22:12] 2025-11-25 17:21:34,164 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 12:22:12] 2025-11-25 17:21:34,240 | INFO     | fitting pss+swap vs Time
[2025-11-25 12:22:12] 2025-11-25 17:21:34,247 | INFO     | sum of square deviations: 3034572121983.3984
[2025-11-25 12:22:12] 2025-11-25 17:21:34,513 | INFO     | sum of deviations: 16430772043915.512
[2025-11-25 12:22:12] 2025-11-25 17:21:34,517 | INFO     | mean x: 1764026007.8302946
[2025-11-25 12:22:12] 2025-11-25 17:21:34,518 | INFO     | mean y: 3442968.8747078073
[2025-11-25 12:22:12] 2025-11-25 17:21:34,518 | INFO     | intersect: -9547923104.854898
[2025-11-25 12:22:12] 2025-11-25 17:21:34,521 | INFO     | chi2: 35.14165003206951
[2025-11-25 12:22:12] 2025-11-25 17:21:34,528 | INFO     | sum of square deviations: 3013344019233.963
[2025-11-25 12:22:12] 2025-11-25 17:21:34,726 | INFO     | sum of deviations: 17390982728508.623
[2025-11-25 12:22:12] 2025-11-25 17:21:34,726 | INFO     | mean x: 1764025855.341612
[2025-11-25 12:22:12] 2025-11-25 17:21:34,727 | INFO     | mean y: 3449865.6808809745
[2025-11-25 12:22:12] 2025-11-25 17:21:34,727 | INFO     | intersect: -10177313760.069181
[2025-11-25 12:22:12] 2025-11-25 17:21:34,729 | INFO     | chi2: 31.151657793289623
[2025-11-25 12:22:12] 2025-11-25 17:21:34,730 | INFO     | current chi2=31.151657793289623 (change=11.354026447644634 %)
[2025-11-25 12:22:12] 2025-11-25 17:21:34,730 | INFO     | right removable region: 2133
[2025-11-25 12:22:12] 2025-11-25 17:21:34,737 | INFO     | sum of square deviations: 3013337716713.961
[2025-11-25 12:22:12] 2025-11-25 17:21:34,815 | INFO     | time since job start (130654s) is within the limit (172800.0s)
[2025-11-25 12:22:12] 2025-11-25 17:21:35,253 | INFO     | sum of deviations: 15389616111065.51
[2025-11-25 12:22:12] 2025-11-25 17:21:35,253 | INFO     | mean x: 1764026160.341612
[2025-11-25 12:22:12] 2025-11-25 17:21:35,253 | INFO     | mean y: 3450446.043111528
[2025-11-25 12:22:12] 2025-11-25 17:21:35,253 | INFO     | intersect: -9005724087.217901
[2025-11-25 12:22:12] 2025-11-25 17:21:35,437 | INFO     | chi2: 30.84507025003025
[2025-11-25 12:22:12] 2025-11-25 17:21:35,438 | INFO     | current chi2=30.84507025003025 (change=12.226459992966458 %)
[2025-11-25 12:22:12] 2025-11-25 17:21:35,438 | INFO     | left removable region: 10
[2025-11-25 12:22:12] 2025-11-25 17:21:35,467 | INFO     | sum of square deviations: 2966978907466.7373
[2025-11-25 12:22:12] 2025-11-25 17:21:36,069 | INFO     | sum of deviations: 15553753543179.139
[2025-11-25 12:22:12] 2025-11-25 17:21:36,070 | INFO     | mean x: 1764026129.865756
[2025-11-25 12:22:12] 2025-11-25 17:21:36,093 | INFO     | mean y: 3465727.077720207
[2025-11-25 12:22:12] 2025-11-25 17:21:36,093 | INFO     | intersect: -9244064681.248138
[2025-11-25 12:22:12] 2025-11-25 17:21:36,096 | INFO     | chi2: 22.469081642448607
[2025-11-25 12:22:12] 2025-11-25 17:21:36,097 | INFO     | current memory leak: 5.24 B/s (using 2123 data points, chi2=22.47)
[2025-11-25 12:22:12] 2025-11-25 17:21:36,118 | INFO     | could have reported an average CPU frequency of 2599 MHz (74 samples)
[2025-11-25 12:22:12] 2025-11-25 17:21:36,118 | INFO     | ..............................
[2025-11-25 12:22:12] 2025-11-25 17:21:36,118 | INFO     | . Timing measurements:
[2025-11-25 12:22:12] 2025-11-25 17:21:36,118 | INFO     | . get job = 1 s
[2025-11-25 12:22:12] 2025-11-25 17:21:36,118 | INFO     | . initial setup = 8 s
[2025-11-25 12:22:12] 2025-11-25 17:21:36,119 | INFO     | . payload setup = 53 s
[2025-11-25 12:22:12] 2025-11-25 17:21:36,119 | INFO     | . stage-in = 0 s
[2025-11-25 12:22:12] 2025-11-25 17:21:36,119 | INFO     | . payload execution = 130475 s
[2025-11-25 12:22:12] 2025-11-25 17:21:36,143 | INFO     | . stage-out = 10 s
[2025-11-25 12:22:12] 2025-11-25 17:21:36,143 | INFO     | . log creation = 2 s
[2025-11-25 12:22:12] 2025-11-25 17:21:36,143 | INFO     | ..............................
[2025-11-25 12:22:12] 2025-11-25 17:21:36,924 | INFO     | 
[2025-11-25 12:22:12] 2025-11-25 17:21:36,924 | INFO     | job summary report
[2025-11-25 12:22:12] 2025-11-25 17:21:36,924 | INFO     | --------------------------------------------------
[2025-11-25 12:22:12] 2025-11-25 17:21:36,924 | INFO     | PanDA job id: 6895355363
[2025-11-25 12:22:12] 2025-11-25 17:21:36,924 | INFO     | task id: 47556137
[2025-11-25 12:22:12] 2025-11-25 17:21:36,925 | INFO     | errors: (none)
[2025-11-25 12:22:12] 2025-11-25 17:21:36,925 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 12:22:12] 2025-11-25 17:21:36,925 | INFO     | pilot state: finished 
[2025-11-25 12:22:12] 2025-11-25 17:21:36,925 | INFO     | transexitcode: 0
[2025-11-25 12:22:12] 2025-11-25 17:21:36,925 | INFO     | exeerrorcode: 0
[2025-11-25 12:22:12] 2025-11-25 17:21:36,925 | INFO     | exeerrordiag: 
[2025-11-25 12:22:12] 2025-11-25 17:21:36,925 | INFO     | exitcode: 0
[2025-11-25 12:22:12] 2025-11-25 17:21:36,925 | INFO     | exitmsg: OK
[2025-11-25 12:22:12] 2025-11-25 17:21:36,925 | INFO     | cpuconsumptiontime: 279422 s
[2025-11-25 12:22:12] 2025-11-25 17:21:36,925 | INFO     | nevents: 1000
[2025-11-25 12:22:12] 2025-11-25 17:21:36,925 | INFO     | neventsw: 0
[2025-11-25 12:22:12] 2025-11-25 17:21:36,925 | INFO     | pid: 2478213
[2025-11-25 12:22:12] 2025-11-25 17:21:36,925 | INFO     | pgrp: 2478213
[2025-11-25 12:22:12] 2025-11-25 17:21:36,926 | INFO     | corecount: 12
[2025-11-25 12:22:12] 2025-11-25 17:21:36,926 | INFO     | event service: False
[2025-11-25 12:22:12] 2025-11-25 17:21:36,926 | INFO     | sizes: {0: 2298579, 1: 2298635, 2: 2298691, 3: 2298862, 4: 2298890, 15: 2298918, 26: 2299074, 33: 2299364, 37: 2299420, 130533: 2383043, 130534: 2383042, 130546: 2
[2025-11-25 12:22:12] 2025-11-25 17:21:36,926 | INFO     | --------------------------------------------------
[2025-11-25 12:22:12] 2025-11-25 17:21:36,926 | INFO     | 
[2025-11-25 12:22:12] 2025-11-25 17:21:36,926 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-11-25 12:22:12] 2025-11-25 17:21:36,970 | INFO     | time since job start (130656s) is within the limit (172800.0s)
[2025-11-25 12:22:12] 2025-11-25 17:21:37,192 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 12:22:12] 2025-11-25 17:21:37,193 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 12:22:12] 2025-11-25 17:21:37,193 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 12:22:12] 2025-11-25 17:21:37,193 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 12:22:12] 2025-11-25 17:21:37,193 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 12:22:12] 2025-11-25 17:21:37,193 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 12:22:12] 2025-11-25 17:21:37,193 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 12:22:12] 2025-11-25 17:21:37,193 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 12:22:12] 2025-11-25 17:21:37,193 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 12:22:12] 2025-11-25 17:21:37,193 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 12:22:12] 2025-11-25 17:21:37,193 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 12:22:12] 2025-11-25 17:21:37,193 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 12:22:12] 2025-11-25 17:21:37,193 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 12:22:12] 2025-11-25 17:21:37,194 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 12:22:12] 2025-11-25 17:21:37,194 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 12:22:12] 2025-11-25 17:21:37,194 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 12:22:12] 2025-11-25 17:21:37,194 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 12:22:12] 2025-11-25 17:21:37,194 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 12:22:12] 2025-11-25 17:21:37,194 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 12:22:12] 2025-11-25 17:21:37,194 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 12:22:12] 2025-11-25 17:21:37,194 | INFO     | job 6895355363 has completed (purged errors)
[2025-11-25 12:22:12] 2025-11-25 17:21:37,194 | INFO     | overall cleanup function is called
[2025-11-25 12:22:12] 2025-11-25 17:21:38,296 | INFO     | --- collectZombieJob: --- 10, [2478213]
[2025-11-25 12:22:12] 2025-11-25 17:21:38,296 | INFO     | zombie collector waiting for pid 2478213
[2025-11-25 12:22:12] 2025-11-25 17:21:38,296 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 12:22:12] 2025-11-25 17:21:38,297 | INFO     | collected zombie processes
[2025-11-25 12:22:12] 2025-11-25 17:21:38,297 | INFO     | will attempt to kill all subprocesses of pid=2478213
[2025-11-25 12:22:12] 2025-11-25 17:21:40,976 | INFO     | process IDs to be killed: [2478213] (in reverse order)
[2025-11-25 12:22:12] 2025-11-25 17:21:41,338 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 12:22:12] 2025-11-25 17:21:41,339 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 12:22:12] 2025-11-25 17:21:41,371 | INFO     | did not find any defunct processes belonging to 2478213
[2025-11-25 12:22:12] 2025-11-25 17:21:41,400 | INFO     | did not find any defunct processes belonging to 2478213
[2025-11-25 12:22:12] 2025-11-25 17:21:41,409 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 12:22:12] 2025-11-25 17:21:41,410 | INFO     | ready for new job
[2025-11-25 12:22:12] 2025-11-25 17:21:41,410 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 12:22:12] 2025-11-25 17:21:41,427 | INFO     | ***************************************
[2025-11-25 12:22:12] 2025-11-25 17:21:41,427 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 12:22:12] 2025-11-25 17:21:41,428 | INFO     | ***************************************
[2025-11-25 12:22:12] 2025-11-25 17:21:41,428 | INFO     | 
[2025-11-25 12:22:12] 2025-11-25 17:21:41,440 | INFO     | architecture information:
[2025-11-25 12:22:12] 2025-11-25 17:21:41,444 | INFO     | executing command: cat /etc/os-release
[2025-11-25 12:22:12] 2025-11-25 17:21:41,527 | INFO     | cat /etc/os-release:
[2025-11-25 12:22:12] NAME="CentOS Linux"
[2025-11-25 12:22:12] VERSION="7 (Core)"
[2025-11-25 12:22:12] ID="centos"
[2025-11-25 12:22:12] ID_LIKE="rhel fedora"
[2025-11-25 12:22:12] VERSION_ID="7"
[2025-11-25 12:22:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 12:22:12] ANSI_COLOR="0;31"
[2025-11-25 12:22:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 12:22:12] HOME_URL="https://www.centos.org/"
[2025-11-25 12:22:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 12:22:12] 
[2025-11-25 12:22:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 12:22:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 12:22:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 12:22:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 12:22:12] 
[2025-11-25 12:22:12] 2025-11-25 17:21:41,527 | INFO     | ***************************************
[2025-11-25 12:22:12] 2025-11-25 17:21:42,030 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-25 12:22:12] 2025-11-25 17:21:42,081 | INFO     | sufficient remaining disk space (121793150976 B)
[2025-11-25 12:22:12] 2025-11-25 17:21:42,082 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 12:22:12] 2025-11-25 17:21:42,082 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 12:22:12] 2025-11-25 17:21:42,082 | INFO     | update_server=False
[2025-11-25 12:22:12] 2025-11-25 17:21:42,082 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 12:22:12] 2025-11-25 17:21:42,103 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 12:22:12] 2025-11-25 17:21:42,349 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 12:22:12] 2025-11-25 17:21:42,349 | INFO     | aborting loop
[2025-11-25 12:22:12] 2025-11-25 17:21:42,351 | INFO     | all payload control threads have been joined
[2025-11-25 12:22:12] 2025-11-25 17:21:42,575 | INFO     | all job control threads have been joined
[2025-11-25 12:22:12] 2025-11-25 17:21:42,775 | INFO     | all data control threads have been joined
[2025-11-25 12:22:12] 2025-11-25 17:21:43,088 | INFO     | [job] retrieve thread has finished
[2025-11-25 12:22:12] 2025-11-25 17:21:43,109 | INFO     | [job] queue monitor thread has finished
[2025-11-25 12:22:12] 2025-11-25 17:21:43,175 | INFO     | [payload] failed_post thread has finished
[2025-11-25 12:22:12] 2025-11-25 17:21:43,211 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 12:22:12] 2025-11-25 17:21:43,355 | INFO     | [job] job monitor thread has finished
[2025-11-25 12:22:12] 2025-11-25 17:21:43,363 | INFO     | [payload] control thread has finished
[2025-11-25 12:22:12] 2025-11-25 17:21:43,583 | INFO     | [job] control thread has finished
[2025-11-25 12:22:12] 2025-11-25 17:21:43,799 | INFO     | [data] control thread has finished
[2025-11-25 12:22:12] 2025-11-25 17:21:43,876 | INFO     | [payload] validate_post thread has finished
[2025-11-25 12:22:12] 2025-11-25 17:21:44,092 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 12:22:12] 2025-11-25 17:21:44,093 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 12:22:12] 2025-11-25 17:21:44,450 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 12:22:12] 2025-11-25 17:21:44,451 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 12:22:12] 2025-11-25 17:21:44,458 | INFO     | [data] copytool_in thread has finished
[2025-11-25 12:22:12] 2025-11-25 17:21:44,576 | INFO     | [job] validate thread has finished
[2025-11-25 12:22:12] 2025-11-25 17:21:45,161 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 12:22:12] 2025-11-25 17:21:45,235 | INFO     | [data] copytool_out thread has finished
[2025-11-25 12:22:12] 2025-11-25 17:21:49,170 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 12:22:12] 2025-11-25 17:21:52,409 | INFO     | [monitor] cgroup control has ended
[2025-11-25 12:22:12] 2025-11-25 17:21:54,469 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140661139138368)>', '<ExcThread(monitor, started 140660514486016)>']
[2025-11-25 12:22:12] 2025-11-25 17:21:59,495 | INFO     | all workflow threads have been joined
[2025-11-25 12:22:12] 2025-11-25 17:21:59,495 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 12:22:12] 2025-11-25 17:21:59,496 | INFO     | traces error code: 0
[2025-11-25 12:22:12] 2025-11-25 17:21:59,496 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 12:22:12] 2025-11-25 17:22:11,041 | INFO     | PID=2447085 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 12:22:12] 2025-11-25 17:22:11,041 | INFO     | .. there are 18 such processes running
[2025-11-25 12:22:12] 2025-11-25 17:22:11,041 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 12:22:12] 2025-11-25 17:22:11,041 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 12:22:12] 2025-11-25 17:22:11,041 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 12:22:12] 2025-11-25 17:22:11,041 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 12:22:12] 2025-11-25 17:22:11,042 | INFO     | [monitor] control thread has ended
[2025-11-25 12:22:12] 2025-11-25 17:22:11,364 [wrapper] ==== pilot stdout END ====
[2025-11-25 12:22:12] 2025-11-25 17:22:11,381 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 12:22:12] 2025-11-25 17:22:11,400 [wrapper] pilotpid: 2447085
[2025-11-25 12:22:12] 2025-11-25 17:22:11,421 [wrapper] Pilot exit status: 0
[2025-11-25 12:22:12] 2025-11-25 17:22:11,514 [wrapper] pandaids: 6895355363
[2025-11-25 12:22:12] 2025-11-25 17:22:11,872 [wrapper] cleanup supervisor_pilot 2344568 2447086
[2025-11-25 12:22:12] 2025-11-25 17:22:11,888 [wrapper] Test setup, not cleaning
[2025-11-25 12:22:12] 2025-11-25 17:22:12,001 [wrapper] apfmon messages muted
[2025-11-25 12:22:12] 2025-11-25 17:22:12,015 [wrapper] ==== wrapper stdout END ====
[2025-11-25 12:22:12] 2025-11-25 17:22:12,051 [wrapper] ==== wrapper stderr END ====
[2025-11-25 12:22:12]  *** Error codes and diagnostics ***
[2025-11-25 12:22:12]     "exeErrorCode": 0,
[2025-11-25 12:22:12]     "exeErrorDiag": "",
[2025-11-25 12:22:12]     "pilotErrorCode": 0,
[2025-11-25 12:22:12]     "pilotErrorDiag": "",
[2025-11-25 12:22:12]  *** Listing of results directory ***
[2025-11-25 12:22:12] total 1354240
[2025-11-25 12:22:12] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 01:48 pilot3.tar.gz
[2025-11-25 12:22:12] -rwx------. 1 boincer umatlas     36292 Nov 23 02:22 runpilot2-wrapper.sh
[2025-11-25 12:22:12] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 02:22 queuedata.json
[2025-11-25 12:22:12] -rw-r--r--. 1 boincer umatlas       100 Nov 24 00:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 12:22:12] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 00:02 run_atlas
[2025-11-25 12:22:12] -rw-r--r--. 1 boincer umatlas       105 Nov 24 00:02 job.xml
[2025-11-25 12:22:12] -rw-r--r--. 2 boincer umatlas 409143997 Nov 24 00:02 EVNT.47483658._000657.pool.root.1
[2025-11-25 12:22:12] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 00:02 start_atlas.sh
[2025-11-25 12:22:12] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 00:02 shared
[2025-11-25 12:22:12] -rw-r--r--. 2 boincer umatlas    590096 Nov 24 00:02 input.tar.gz
[2025-11-25 12:22:12] -rw-r--r--. 1 boincer umatlas         0 Nov 24 00:02 boinc_lockfile
[2025-11-25 12:22:12] -rw-r--r--. 1 boincer umatlas      2785 Nov 24 00:02 pandaJob.out
[2025-11-25 12:22:12] -rw-------. 1 boincer umatlas        57 Nov 24 00:02 setup.sh.local
[2025-11-25 12:22:12] -rw-------. 1 boincer umatlas    989786 Nov 24 00:03 agis_schedconf.cvmfs.json
[2025-11-25 12:22:12] drwx------. 5 boincer umatlas      4096 Nov 24 00:04 pilot3
[2025-11-25 12:22:12] -rw-r--r--. 1 boincer umatlas       534 Nov 25 11:41 boinc_task_state.xml
[2025-11-25 12:22:12] -rw-r--r--. 1 boincer umatlas      6882 Nov 25 12:11 init_data.xml
[2025-11-25 12:22:12] -rw-------. 1 boincer umatlas 934157239 Nov 25 12:19 HITS.47556137._006529.pool.root.1
[2025-11-25 12:22:12] -rw-------. 1 boincer umatlas      1062 Nov 25 12:20 memory_monitor_summary.json
[2025-11-25 12:22:12] -rw-------. 1 boincer umatlas   1516240 Nov 25 12:20 agis_ddmendpoints.agis.ALL.json
[2025-11-25 12:22:12] -rw-------. 1 boincer umatlas   3431917 Nov 25 12:20 log.47556137._006529.job.log.tgz.1
[2025-11-25 12:22:12] -rw-------. 1 boincer umatlas        95 Nov 25 12:21 pilot_heartbeat.json
[2025-11-25 12:22:12] -rw-------. 1 boincer umatlas      8633 Nov 25 12:21 heartbeat.json
[2025-11-25 12:22:12] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 12:22 boinc_mmap_file
[2025-11-25 12:22:12] -rw-------. 1 boincer umatlas       823 Nov 25 12:22 pilotlog.txt
[2025-11-25 12:22:12] -rw-r--r--. 1 boincer umatlas        30 Nov 25 12:22 wrapper_checkpoint.txt
[2025-11-25 12:22:12] -rw-------. 1 boincer umatlas  16332002 Nov 25 12:22 log.47556137._006529.job.log.1
[2025-11-25 12:22:12] -rw-------. 1 boincer umatlas       353 Nov 25 12:22 output.list
[2025-11-25 12:22:12] -rw-r--r--. 1 boincer umatlas       620 Nov 25 12:22 runtime_log
[2025-11-25 12:22:12] -rw-------. 1 boincer umatlas  19783680 Nov 25 12:22 result.tar.gz
[2025-11-25 12:22:12] -rw-r--r--. 1 boincer umatlas      9356 Nov 25 12:22 runtime_log.err
[2025-11-25 12:22:12] -rw-------. 1 boincer umatlas       665 Nov 25 12:22 5IGODmYbJh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmSTIKDmd6z6mn.diag
[2025-11-25 12:22:12] -rw-r--r--. 1 boincer umatlas     21835 Nov 25 12:22 stderr.txt
[2025-11-25 12:22:12] HITS file was successfully produced:
[2025-11-25 12:22:12] -rw-------. 1 boincer umatlas 934157239 Nov 25 12:19 shared/HITS.pool.root.1
[2025-11-25 12:22:12]  *** Contents of shared directory: ***
[2025-11-25 12:22:12] total 1331744
[2025-11-25 12:22:12] -rw-r--r--. 2 boincer umatlas 409143997 Nov 24 00:02 ATLAS.root_0
[2025-11-25 12:22:12] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 00:02 start_atlas.sh
[2025-11-25 12:22:12] -rw-r--r--. 2 boincer umatlas    590096 Nov 24 00:02 input.tar.gz
[2025-11-25 12:22:12] -rw-------. 1 boincer umatlas 934157239 Nov 25 12:19 HITS.pool.root.1
[2025-11-25 12:22:12] -rw-------. 1 boincer umatlas  19783680 Nov 25 12:22 result.tar.gz
12:22:14 (2440183): run_atlas exited; CPU time 282922.546580
12:22:14 (2440183): called boinc_finish(0)

</stderr_txt>
]]>

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