Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
03:39:59 (967641): wrapper (7.7.26015): starting
03:39:59 (967641): wrapper: running run_atlas (--nthreads 3)
[2025-11-24 03:39:59] Arguments: --nthreads 3
[2025-11-24 03:39:59] Threads: 3
[2025-11-24 03:39:59] Checking for CVMFS
[2025-11-24 03:39:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 03:39:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 03:39:59] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 03:39:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 03:39:59] 2.9.2.0 154488 174 61704 153229 1 88 34937460 36864001 0 130560 0 2441478 100.000 3903 3178 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-24 03:39:59] CVMFS is ok
[2025-11-24 03:39:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 03:39:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 03:39:59] Further information can be found at the LHC@home message board.
[2025-11-24 03:39:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 03:39:59] Checking for apptainer binary...
[2025-11-24 03:39:59] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 03:39:59] Running /usr/bin/apptainer --version
[2025-11-24 03:39:59] apptainer version 1.4.1-1.1
[2025-11-24 03:39:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 03:39:59] thA335
[2025-11-24 03:39:59] apptainer works
[2025-11-24 03:39:59] Set ATHENA_PROC_NUMBER=3
[2025-11-24 03:39:59] Set ATHENA_CORE_NUMBER=3
[2025-11-24 03:40:00] Starting ATLAS job with PandaID=6895355227
[2025-11-24 03:40:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 03:44:17]  *** The last 200 lines of the pilot log: ***
[2025-11-24 03:44:17] 2025-11-24 02:43:25,260 | INFO     | executing command: cat /etc/os-release
[2025-11-24 03:44:17] 2025-11-24 02:43:25,270 | INFO     | cat /etc/os-release:
[2025-11-24 03:44:17] NAME="CentOS Linux"
[2025-11-24 03:44:17] VERSION="7 (Core)"
[2025-11-24 03:44:17] ID="centos"
[2025-11-24 03:44:17] ID_LIKE="rhel fedora"
[2025-11-24 03:44:17] VERSION_ID="7"
[2025-11-24 03:44:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 03:44:17] ANSI_COLOR="0;31"
[2025-11-24 03:44:17] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 03:44:17] HOME_URL="https://www.centos.org/"
[2025-11-24 03:44:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 03:44:17] 
[2025-11-24 03:44:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 03:44:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 03:44:17] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 03:44:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 03:44:17] 
[2025-11-24 03:44:17] 2025-11-24 02:43:25,270 | INFO     | ***************************************
[2025-11-24 03:44:17] 2025-11-24 02:43:25,773 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-24 03:44:17] 2025-11-24 02:43:25,787 | INFO     | sufficient remaining disk space (827097874432 B)
[2025-11-24 03:44:17] 2025-11-24 02:43:25,787 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 03:44:17] 2025-11-24 02:43:25,787 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 03:44:17] 2025-11-24 02:43:25,787 | INFO     | update_server=False
[2025-11-24 03:44:17] 2025-11-24 02:43:25,787 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 03:44:17] 2025-11-24 02:43:25,787 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 03:44:17] 2025-11-24 02:43:25,787 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 03:44:17] 2025-11-24 02:43:25,787 | INFO     | aborting loop
[2025-11-24 03:44:17] 2025-11-24 02:43:26,041 | INFO     | all job control threads have been joined
[2025-11-24 03:44:17] 2025-11-24 02:43:26,049 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 03:44:17] 2025-11-24 02:43:26,793 | INFO     | [job] retrieve thread has finished
[2025-11-24 03:44:17] 2025-11-24 02:43:26,794 | INFO     | [job] queue monitor thread has finished
[2025-11-24 03:44:17] 2025-11-24 02:43:26,794 | INFO     | [job] job monitor thread has finished
[2025-11-24 03:44:17] 2025-11-24 02:43:26,838 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 03:44:17] 2025-11-24 02:43:26,862 | INFO     | all data control threads have been joined
[2025-11-24 03:44:17] 2025-11-24 02:43:27,047 | INFO     | [job] control thread has finished
[2025-11-24 03:44:17] 2025-11-24 02:43:27,162 | INFO     | all payload control threads have been joined
[2025-11-24 03:44:17] 2025-11-24 02:43:27,214 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 03:44:17] 2025-11-24 02:43:27,503 | INFO     | [data] copytool_in thread has finished
[2025-11-24 03:44:17] 2025-11-24 02:43:27,532 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 03:44:17] 2025-11-24 02:43:27,784 | INFO     | [payload] validate_post thread has finished
[2025-11-24 03:44:17] 2025-11-24 02:43:27,868 | INFO     | [data] control thread has finished
[2025-11-24 03:44:17] 2025-11-24 02:43:28,055 | INFO     | [data] copytool_out thread has finished
[2025-11-24 03:44:17] 2025-11-24 02:43:28,168 | INFO     | [payload] control thread has finished
[2025-11-24 03:44:17] 2025-11-24 02:43:28,207 | INFO     | [job] validate thread has finished
[2025-11-24 03:44:17] 2025-11-24 02:43:28,281 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 03:44:17] 2025-11-24 02:43:28,332 | INFO     | [payload] failed_post thread has finished
[2025-11-24 03:44:17] 2025-11-24 02:43:28,876 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 03:44:17] 2025-11-24 02:43:32,883 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 03:44:17] 2025-11-24 02:43:56,249 | INFO     | PID=971385 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-24 03:44:17] 2025-11-24 02:43:56,249 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 03:44:17] 2025-11-24 02:43:56,249 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 03:44:17] 2025-11-24 02:43:56,249 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 03:44:17] 2025-11-24 02:44:11,482 | INFO     | [monitor] cgroup control has ended
[2025-11-24 03:44:17] 2025-11-24 02:44:12,592 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140520964577088)>', '<ExcThread(monitor, started 140520248567552)>']
[2025-11-24 03:44:17] 2025-11-24 02:44:13,338 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 03:44:17] 2025-11-24 02:44:13,338 | INFO     | [monitor] control thread has ended
[2025-11-24 03:44:17] 2025-11-24 02:44:17,618 | INFO     | all workflow threads have been joined
[2025-11-24 03:44:17] 2025-11-24 02:44:17,619 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 03:44:17] 2025-11-24 02:44:17,619 | INFO     | traces error code: 0
[2025-11-24 03:44:17] 2025-11-24 02:44:17,620 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 03:44:17] 2025-11-24 02:44:17,669 [wrapper] ==== pilot stdout END ====
[2025-11-24 03:44:17] 2025-11-24 02:44:17,672 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 03:44:17] 2025-11-24 02:44:17,675 [wrapper] pilotpid: 971385
[2025-11-24 03:44:17] 2025-11-24 02:44:17,678 [wrapper] Pilot exit status: 0
[2025-11-24 03:44:17] 2025-11-24 02:44:17,685 [wrapper] pandaids: 6895355227
[2025-11-24 03:44:17] 2025-11-24 02:44:17,701 [wrapper] cleanup supervisor_pilot  971391 971386
[2025-11-24 03:44:17] 2025-11-24 02:44:17,703 [wrapper] Test setup, not cleaning
[2025-11-24 03:44:17] 2025-11-24 02:44:17,706 [wrapper] apfmon messages muted
[2025-11-24 03:44:17] 2025-11-24 02:44:17,709 [wrapper] ==== wrapper stdout END ====
[2025-11-24 03:44:17] 2025-11-24 02:44:17,711 [wrapper] ==== wrapper stderr END ====
[2025-11-24 03:44:17]  *** Error codes and diagnostics ***
[2025-11-24 03:44:17]     "exeErrorCode": 65,
[2025-11-24 03:44:17]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-24 03:44:17]     "pilotErrorCode": 1305,
[2025-11-24 03:44:17]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-24 03:44:17]  *** Listing of results directory ***
[2025-11-24 03:44:17] total 406588
[2025-11-24 03:44:17] -rw-r--r-- 1 boinc boinc    576529 Nov 23 07:48 pilot3.tar.gz
[2025-11-24 03:44:17] -rwx------ 1 boinc boinc     36292 Nov 23 08:01 runpilot2-wrapper.sh
[2025-11-24 03:44:17] -rw-r--r-- 1 boinc boinc      5112 Nov 23 08:01 queuedata.json
[2025-11-24 03:44:17] -rw-r--r-- 1 boinc boinc       100 Nov 24 03:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 03:44:17] -rwxr-xr-x 1 boinc boinc      7986 Nov 24 03:39 run_atlas
[2025-11-24 03:44:17] -rw-r--r-- 1 boinc boinc       105 Nov 24 03:39 job.xml
[2025-11-24 03:44:17] -rw-r--r-- 2 boinc boinc 412151785 Nov 24 03:39 EVNT.47483658._000652.pool.root.1
[2025-11-24 03:44:17] -rw-r--r-- 2 boinc boinc    590095 Nov 24 03:39 input.tar.gz
[2025-11-24 03:44:17] -rw-r--r-- 2 boinc boinc     15847 Nov 24 03:39 start_atlas.sh
[2025-11-24 03:44:17] drwxrwx--x 2 boinc boinc      4096 Nov 24 03:39 shared
[2025-11-24 03:44:17] -rw-r--r-- 1 boinc boinc         0 Nov 24 03:39 boinc_setup_complete
[2025-11-24 03:44:17] -rw-r--r-- 1 boinc boinc      6195 Nov 24 03:39 init_data.xml
[2025-11-24 03:44:17] -rw-r--r-- 1 boinc boinc         0 Nov 24 03:39 boinc_lockfile
[2025-11-24 03:44:17] -rw-r--r-- 1 boinc boinc      2786 Nov 24 03:39 pandaJob.out
[2025-11-24 03:44:17] -rw------- 1 boinc boinc    989786 Nov 24 03:40 agis_schedconf.cvmfs.json
[2025-11-24 03:44:17] -rw------- 1 boinc boinc   1526164 Nov 24 03:40 agis_ddmendpoints.agis.ALL.json
[2025-11-24 03:44:17] drwx------ 5 boinc boinc      4096 Nov 24 03:40 pilot3
[2025-11-24 03:44:17] -rw-r--r-- 1 boinc boinc       522 Nov 24 03:40 boinc_task_state.xml
[2025-11-24 03:44:17] -rw------- 1 boinc boinc       985 Nov 24 03:41 memory_monitor_summary.json
[2025-11-24 03:44:17] -rw------- 1 boinc boinc     55809 Nov 24 03:41 log.47556137._006472.job.log.tgz.1
[2025-11-24 03:44:17] -rw------- 1 boinc boinc        95 Nov 24 03:43 pilot_heartbeat.json
[2025-11-24 03:44:17] -rw------- 1 boinc boinc      8399 Nov 24 03:43 heartbeat.json
[2025-11-24 03:44:17] -rw-r--r-- 1 boinc boinc        22 Nov 24 03:44 wrapper_checkpoint.txt
[2025-11-24 03:44:17] -rw-r--r-- 1 boinc boinc      8192 Nov 24 03:44 boinc_mmap_file
[2025-11-24 03:44:17] -rw------- 1 boinc boinc      4751 Nov 24 03:44 pilotlog.txt
[2025-11-24 03:44:17] -rw------- 1 boinc boinc     91951 Nov 24 03:44 log.47556137._006472.job.log.1
[2025-11-24 03:44:17] -rw------- 1 boinc boinc       186 Nov 24 03:44 output.list
[2025-11-24 03:44:17] -rw-r--r-- 1 boinc boinc       620 Nov 24 03:44 runtime_log
[2025-11-24 03:44:17] -rw------- 1 boinc boinc    163840 Nov 24 03:44 result.tar.gz
[2025-11-24 03:44:17] -rw-r--r-- 1 boinc boinc      8744 Nov 24 03:44 runtime_log.err
[2025-11-24 03:44:17] -rw------- 1 boinc boinc       649 Nov 24 03:44 atxKDmRHJh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmAiKKDmiu7TIn.diag
[2025-11-24 03:44:17] -rw-r--r-- 1 boinc boinc      9254 Nov 24 03:44 stderr.txt
[2025-11-24 03:44:17] No HITS result produced
[2025-11-24 03:44:17]  *** Contents of shared directory: ***
[2025-11-24 03:44:17] total 403252
[2025-11-24 03:44:17] -rw-r--r-- 2 boinc boinc 412151785 Nov 24 03:39 ATLAS.root_0
[2025-11-24 03:44:17] -rw-r--r-- 2 boinc boinc    590095 Nov 24 03:39 input.tar.gz
[2025-11-24 03:44:17] -rw-r--r-- 2 boinc boinc     15847 Nov 24 03:39 start_atlas.sh
[2025-11-24 03:44:17] -rw------- 1 boinc boinc    163840 Nov 24 03:44 result.tar.gz
03:44:19 (967641): run_atlas exited; CPU time 30.979778
03:44:19 (967641): called boinc_finish(0)

</stderr_txt>
]]>

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