Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
21:51:29 (1813536): wrapper (7.7.26015): starting
21:51:29 (1813536): wrapper: running run_atlas (--nthreads 10)
[2025-11-23 21:51:29] Arguments: --nthreads 10
[2025-11-23 21:51:29] Threads: 10
[2025-11-23 21:51:29] Checking for CVMFS
[2025-11-23 21:51:29] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 21:51:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 21:51:30] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 21:51:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 21:51:30] 2.13.3.0 7314 26532 156064 153229 0 480 35841359 40960000 34521 16776704 0 400348098 99.772 222297880 49991 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-23 21:51:30] CVMFS is ok
[2025-11-23 21:51:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 21:51:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 21:51:30] Further information can be found at the LHC@home message board.
[2025-11-23 21:51:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 21:51:30] Checking for apptainer binary...
[2025-11-23 21:51:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 21:51:30] Running /usr/bin/apptainer --version
[2025-11-23 21:51:30] apptainer version 1.4.4-1.el9
[2025-11-23 21:51:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 21:51:31] c8-16-1.aglt2.org
[2025-11-23 21:51:31] apptainer works
[2025-11-23 21:51:31] Set ATHENA_PROC_NUMBER=10
[2025-11-23 21:51:31] Set ATHENA_CORE_NUMBER=10
[2025-11-23 21:51:31] Starting ATLAS job with PandaID=6895348448
[2025-11-23 21:51:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 06:39:33]  *** The last 200 lines of the pilot log: ***
[2025-11-24 06:39:33] 2025-11-24 11:38:32,761 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 06:39:33] 2025-11-24 11:38:34,651 | INFO     | time since job start (31566s) is within the limit (172800.0s)
[2025-11-24 06:39:33] 2025-11-24 11:38:35,272 | INFO     | monitor loop #1810: job 0:6895348448 is in state 'finished'
[2025-11-24 06:39:33] 2025-11-24 11:38:35,277 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 06:39:33] 2025-11-24 11:38:36,660 | INFO     | time since job start (31568s) is within the limit (172800.0s)
[2025-11-24 06:39:33] 2025-11-24 11:38:37,788 | INFO     | monitor loop #1811: job 0:6895348448 is in state 'finished'
[2025-11-24 06:39:33] 2025-11-24 11:38:37,788 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 06:39:33] 2025-11-24 11:38:38,666 | INFO     | time since job start (31570s) is within the limit (172800.0s)
[2025-11-24 06:39:33] 2025-11-24 11:38:40,315 | INFO     | monitor loop #1812: job 0:6895348448 is in state 'finished'
[2025-11-24 06:39:33] 2025-11-24 11:38:40,317 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 06:39:33] 2025-11-24 11:38:40,673 | INFO     | time since job start (31572s) is within the limit (172800.0s)
[2025-11-24 06:39:33] 2025-11-24 11:38:42,711 | INFO     | time since job start (31574s) is within the limit (172800.0s)
[2025-11-24 06:39:33] 2025-11-24 11:38:42,822 | INFO     | monitor loop #1813: job 0:6895348448 is in state 'finished'
[2025-11-24 06:39:33] 2025-11-24 11:38:42,822 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 06:39:33] 2025-11-24 11:38:44,720 | INFO     | time since job start (31576s) is within the limit (172800.0s)
[2025-11-24 06:39:33] 2025-11-24 11:38:45,327 | INFO     | monitor loop #1814: job 0:6895348448 is in state 'finished'
[2025-11-24 06:39:33] 2025-11-24 11:38:45,327 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 06:39:33] 2025-11-24 11:38:45,766 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-24 06:39:33] 2025-11-24 11:38:45,776 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3799.9863906250007
[2025-11-24 06:39:33] 2025-11-24 11:38:45,804 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6895348448/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 06:39:33] 2025-11-24 11:38:45,804 | INFO     | extracted standard info from prmon json
[2025-11-24 06:39:33] 2025-11-24 11:38:45,804 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 06:39:33] 2025-11-24 11:38:45,804 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 06:39:33] 2025-11-24 11:38:45,815 | INFO     | fitting pss+swap vs Time
[2025-11-24 06:39:33] 2025-11-24 11:38:45,815 | INFO     | sum of square deviations: 42357153980.71066
[2025-11-24 06:39:33] 2025-11-24 11:38:45,835 | INFO     | sum of deviations: 70745974602.07025
[2025-11-24 06:39:33] 2025-11-24 11:38:45,835 | INFO     | mean x: 1763968574.908738
[2025-11-24 06:39:33] 2025-11-24 11:38:45,835 | INFO     | mean y: 3041936.3844660195
[2025-11-24 06:39:33] 2025-11-24 11:38:45,835 | INFO     | intersect: -2943182355.648335
[2025-11-24 06:39:33] 2025-11-24 11:38:45,836 | INFO     | chi2: 26.677964138297334
[2025-11-24 06:39:33] 2025-11-24 11:38:45,852 | INFO     | sum of square deviations: 41135922805.49216
[2025-11-24 06:39:33] 2025-11-24 11:38:45,872 | INFO     | sum of deviations: 262217702713.32632
[2025-11-24 06:39:33] 2025-11-24 11:38:45,872 | INFO     | mean x: 1763968422.437255
[2025-11-24 06:39:33] 2025-11-24 11:38:45,873 | INFO     | mean y: 3065827.119607843
[2025-11-24 06:39:33] 2025-11-24 11:38:45,873 | INFO     | intersect: -11241212065.403858
[2025-11-24 06:39:33] 2025-11-24 11:38:45,873 | INFO     | chi2: 22.778955173091983
[2025-11-24 06:39:33] 2025-11-24 11:38:45,873 | INFO     | current chi2=22.778955173091983 (change=14.615091860057492 %)
[2025-11-24 06:39:33] 2025-11-24 11:38:45,873 | INFO     | right removable region: 509
[2025-11-24 06:39:33] 2025-11-24 11:38:45,873 | INFO     | sum of square deviations: 41135009025.49212
[2025-11-24 06:39:33] 2025-11-24 11:38:45,893 | INFO     | sum of deviations: -164146115029.5624
[2025-11-24 06:39:33] 2025-11-24 11:38:45,893 | INFO     | mean x: 1763968727.437255
[2025-11-24 06:39:33] 2025-11-24 11:38:45,893 | INFO     | mean y: 3071249.998039216
[2025-11-24 06:39:33] 2025-11-24 11:38:45,893 | INFO     | intersect: 7042053870.933599
[2025-11-24 06:39:33] 2025-11-24 11:38:45,894 | INFO     | chi2: 21.811666886483387
[2025-11-24 06:39:33] 2025-11-24 11:38:45,894 | INFO     | current chi2=21.811666886483387 (change=18.240886847989174 %)
[2025-11-24 06:39:33] 2025-11-24 11:38:45,894 | INFO     | left removable region: 10
[2025-11-24 06:39:33] 2025-11-24 11:38:45,894 | INFO     | sum of square deviations: 38530558448.99799
[2025-11-24 06:39:33] 2025-11-24 11:38:45,922 | INFO     | sum of deviations: -142697676835.8658
[2025-11-24 06:39:33] 2025-11-24 11:38:45,923 | INFO     | mean x: 1763968697.002004
[2025-11-24 06:39:33] 2025-11-24 11:38:45,923 | INFO     | mean y: 3126748.865731463
[2025-11-24 06:39:33] 2025-11-24 11:38:45,923 | INFO     | intersect: 6535973538.682275
[2025-11-24 06:39:33] 2025-11-24 11:38:45,923 | INFO     | chi2: 13.643814436229237
[2025-11-24 06:39:33] 2025-11-24 11:38:45,923 | INFO     | current memory leak: -3.70 B/s (using 499 data points, chi2=13.64)
[2025-11-24 06:39:33] 2025-11-24 11:38:45,924 | INFO     | could have reported an average CPU frequency of 3793 MHz (21 samples)
[2025-11-24 06:39:33] 2025-11-24 11:38:45,924 | INFO     | ..............................
[2025-11-24 06:39:33] 2025-11-24 11:38:45,924 | INFO     | . Timing measurements:
[2025-11-24 06:39:33] 2025-11-24 11:38:45,924 | INFO     | . get job = 0 s
[2025-11-24 06:39:33] 2025-11-24 11:38:45,924 | INFO     | . initial setup = 6 s
[2025-11-24 06:39:33] 2025-11-24 11:38:45,924 | INFO     | . payload setup = 53 s
[2025-11-24 06:39:33] 2025-11-24 11:38:45,924 | INFO     | . stage-in = 0 s
[2025-11-24 06:39:33] 2025-11-24 11:38:45,924 | INFO     | . payload execution = 31413 s
[2025-11-24 06:39:33] 2025-11-24 11:38:45,924 | INFO     | . stage-out = 9 s
[2025-11-24 06:39:33] 2025-11-24 11:38:45,924 | INFO     | . log creation = 4 s
[2025-11-24 06:39:33] 2025-11-24 11:38:45,924 | INFO     | ..............................
[2025-11-24 06:39:33] 2025-11-24 11:38:46,257 | INFO     | 
[2025-11-24 06:39:33] 2025-11-24 11:38:46,257 | INFO     | job summary report
[2025-11-24 06:39:33] 2025-11-24 11:38:46,257 | INFO     | --------------------------------------------------
[2025-11-24 06:39:33] 2025-11-24 11:38:46,257 | INFO     | PanDA job id: 6895348448
[2025-11-24 06:39:33] 2025-11-24 11:38:46,257 | INFO     | task id: 47556137
[2025-11-24 06:39:33] 2025-11-24 11:38:46,257 | INFO     | errors: (none)
[2025-11-24 06:39:33] 2025-11-24 11:38:46,257 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 06:39:33] 2025-11-24 11:38:46,257 | INFO     | pilot state: finished 
[2025-11-24 06:39:33] 2025-11-24 11:38:46,257 | INFO     | transexitcode: 0
[2025-11-24 06:39:33] 2025-11-24 11:38:46,258 | INFO     | exeerrorcode: 0
[2025-11-24 06:39:33] 2025-11-24 11:38:46,258 | INFO     | exeerrordiag: 
[2025-11-24 06:39:33] 2025-11-24 11:38:46,258 | INFO     | exitcode: 0
[2025-11-24 06:39:33] 2025-11-24 11:38:46,258 | INFO     | exitmsg: OK
[2025-11-24 06:39:33] 2025-11-24 11:38:46,258 | INFO     | cpuconsumptiontime: 137654 s
[2025-11-24 06:39:33] 2025-11-24 11:38:46,258 | INFO     | nevents: 1000
[2025-11-24 06:39:33] 2025-11-24 11:38:46,258 | INFO     | neventsw: 0
[2025-11-24 06:39:33] 2025-11-24 11:38:46,258 | INFO     | pid: 1838988
[2025-11-24 06:39:33] 2025-11-24 11:38:46,258 | INFO     | pgrp: 1838988
[2025-11-24 06:39:33] 2025-11-24 11:38:46,258 | INFO     | corecount: 10
[2025-11-24 06:39:33] 2025-11-24 11:38:46,258 | INFO     | event service: False
[2025-11-24 06:39:33] 2025-11-24 11:38:46,258 | INFO     | sizes: {0: 2298529, 1: 2298784, 2: 2298784, 12: 2298812, 23: 2298840, 29: 2299130, 34: 2299286, 31470: 2338438, 31480: 2348223, 31483: 2348279, 31515: 2348525}
[2025-11-24 06:39:33] 2025-11-24 11:38:46,258 | INFO     | --------------------------------------------------
[2025-11-24 06:39:33] 2025-11-24 11:38:46,258 | INFO     | 
[2025-11-24 06:39:33] 2025-11-24 11:38:46,258 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-24 06:39:33] 2025-11-24 11:38:46,395 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 06:39:33] 2025-11-24 11:38:46,395 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 06:39:33] 2025-11-24 11:38:46,396 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 06:39:33] 2025-11-24 11:38:46,396 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 06:39:33] 2025-11-24 11:38:46,396 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 06:39:33] 2025-11-24 11:38:46,396 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 06:39:33] 2025-11-24 11:38:46,396 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 06:39:33] 2025-11-24 11:38:46,396 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 06:39:33] 2025-11-24 11:38:46,396 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 06:39:33] 2025-11-24 11:38:46,396 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 06:39:33] 2025-11-24 11:38:46,396 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 06:39:33] 2025-11-24 11:38:46,396 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 06:39:33] 2025-11-24 11:38:46,396 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 06:39:33] 2025-11-24 11:38:46,396 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 06:39:33] 2025-11-24 11:38:46,396 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 06:39:33] 2025-11-24 11:38:46,396 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 06:39:33] 2025-11-24 11:38:46,396 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 06:39:33] 2025-11-24 11:38:46,396 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 06:39:33] 2025-11-24 11:38:46,396 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 06:39:33] 2025-11-24 11:38:46,396 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 06:39:33] 2025-11-24 11:38:46,396 | INFO     | job 6895348448 has completed (purged errors)
[2025-11-24 06:39:33] 2025-11-24 11:38:46,396 | INFO     | overall cleanup function is called
[2025-11-24 06:39:33] 2025-11-24 11:38:47,488 | INFO     | --- collectZombieJob: --- 10, [1838988]
[2025-11-24 06:39:33] 2025-11-24 11:38:47,488 | INFO     | zombie collector waiting for pid 1838988
[2025-11-24 06:39:33] 2025-11-24 11:38:47,488 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 06:39:33] 2025-11-24 11:38:47,488 | INFO     | collected zombie processes
[2025-11-24 06:39:33] 2025-11-24 11:38:47,488 | INFO     | will attempt to kill all subprocesses of pid=1838988
[2025-11-24 06:39:33] 2025-11-24 11:38:49,983 | INFO     | process IDs to be killed: [1838988] (in reverse order)
[2025-11-24 06:39:33] 2025-11-24 11:38:50,260 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 06:39:33] 2025-11-24 11:38:50,261 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 06:39:33] 2025-11-24 11:38:50,368 | INFO     | did not find any defunct processes belonging to 1838988
[2025-11-24 06:39:33] 2025-11-24 11:38:50,428 | INFO     | did not find any defunct processes belonging to 1838988
[2025-11-24 06:39:33] 2025-11-24 11:38:50,446 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 06:39:33] 2025-11-24 11:38:50,446 | INFO     | ready for new job
[2025-11-24 06:39:33] 2025-11-24 11:38:50,446 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 06:39:33] 2025-11-24 11:38:50,465 | INFO     | ***************************************
[2025-11-24 06:39:33] 2025-11-24 11:38:50,465 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 06:39:33] 2025-11-24 11:38:50,465 | INFO     | ***************************************
[2025-11-24 06:39:33] 2025-11-24 11:38:50,465 | INFO     | 
[2025-11-24 06:39:33] 2025-11-24 11:38:50,474 | INFO     | architecture information:
[2025-11-24 06:39:33] 2025-11-24 11:38:50,504 | INFO     | executing command: cat /etc/os-release
[2025-11-24 06:39:33] 2025-11-24 11:38:50,633 | INFO     | cat /etc/os-release:
[2025-11-24 06:39:33] NAME="CentOS Linux"
[2025-11-24 06:39:33] VERSION="7 (Core)"
[2025-11-24 06:39:33] ID="centos"
[2025-11-24 06:39:33] ID_LIKE="rhel fedora"
[2025-11-24 06:39:33] VERSION_ID="7"
[2025-11-24 06:39:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 06:39:33] ANSI_COLOR="0;31"
[2025-11-24 06:39:33] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 06:39:33] HOME_URL="https://www.centos.org/"
[2025-11-24 06:39:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 06:39:33] 
[2025-11-24 06:39:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 06:39:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 06:39:33] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 06:39:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 06:39:33] 
[2025-11-24 06:39:33] 2025-11-24 11:38:50,633 | INFO     | ***************************************
[2025-11-24 06:39:33] 2025-11-24 11:38:51,138 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-24 06:39:33] 2025-11-24 11:38:51,236 | INFO     | sufficient remaining disk space (160768720896 B)
[2025-11-24 06:39:33] 2025-11-24 11:38:51,245 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 06:39:33] 2025-11-24 11:38:51,249 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 06:39:33] 2025-11-24 11:38:51,249 | INFO     | update_server=False
[2025-11-24 06:39:33] 2025-11-24 11:38:51,249 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 06:39:33] 2025-11-24 11:38:51,253 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 06:39:33] 2025-11-24 11:38:51,301 | INFO     | all data control threads have been joined
[2025-11-24 06:39:33] 2025-11-24 11:38:51,368 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 06:39:33] 2025-11-24 11:38:51,368 | INFO     | aborting loop
[2025-11-24 06:39:33] 2025-11-24 11:38:51,605 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 06:39:33] 2025-11-24 11:38:51,832 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 06:39:33] 2025-11-24 11:38:52,109 | INFO     | all payload control threads have been joined
[2025-11-24 06:39:33] 2025-11-24 11:38:52,257 | INFO     | [job] retrieve thread has finished
[2025-11-24 06:39:33] 2025-11-24 11:38:52,259 | INFO     | [job] queue monitor thread has finished
[2025-11-24 06:39:33] 2025-11-24 11:38:52,295 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 06:39:33] 2025-11-24 11:38:52,307 | INFO     | [data] control thread has finished
[2025-11-24 06:39:33] 2025-11-24 11:38:52,352 | INFO     | [data] copytool_in thread has finished
[2025-11-24 06:39:33] 2025-11-24 11:38:52,373 | INFO     | [job] job monitor thread has finished
[2025-11-24 06:39:33] 2025-11-24 11:38:52,412 | INFO     | all job control threads have been joined
[2025-11-24 06:39:33] 2025-11-24 11:38:52,496 | INFO     | [payload] failed_post thread has finished
[2025-11-24 06:39:33] 2025-11-24 11:38:52,904 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 06:39:33] 2025-11-24 11:38:53,115 | INFO     | [payload] control thread has finished
[2025-11-24 06:39:33] 2025-11-24 11:38:53,362 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 06:39:33] 2025-11-24 11:38:53,417 | INFO     | [job] control thread has finished
[2025-11-24 06:39:33] 2025-11-24 11:38:53,530 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 06:39:33] 2025-11-24 11:38:53,554 | INFO     | [job] validate thread has finished
[2025-11-24 06:39:33] 2025-11-24 11:38:53,614 | INFO     | [data] copytool_out thread has finished
[2025-11-24 06:39:33] 2025-11-24 11:38:53,639 | INFO     | [payload] validate_post thread has finished
[2025-11-24 06:39:33] 2025-11-24 11:38:55,843 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 06:39:33] 2025-11-24 11:39:20,546 | INFO     | PID=1824919 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 06:39:33] 2025-11-24 11:39:20,547 | INFO     | .. there are 51 such processes running
[2025-11-24 06:39:33] 2025-11-24 11:39:20,548 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 06:39:33] 2025-11-24 11:39:20,548 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 06:39:33] 2025-11-24 11:39:20,548 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 06:39:33] 2025-11-24 11:39:23,567 | INFO     | [monitor] cgroup control has ended
[2025-11-24 06:39:33] 2025-11-24 11:39:25,613 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140306383718208)>', '<ExcThread(monitor, started 140305886070528)>']
[2025-11-24 06:39:33] 2025-11-24 11:39:25,621 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 06:39:33] 2025-11-24 11:39:25,621 | INFO     | [monitor] control thread has ended
[2025-11-24 06:39:33] 2025-11-24 11:39:30,639 | INFO     | all workflow threads have been joined
[2025-11-24 06:39:33] 2025-11-24 11:39:30,639 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 06:39:33] 2025-11-24 11:39:30,639 | INFO     | traces error code: 0
[2025-11-24 06:39:33] 2025-11-24 11:39:30,640 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 06:39:33] 2025-11-24 11:39:32,428 [wrapper] ==== pilot stdout END ====
[2025-11-24 06:39:33] 2025-11-24 11:39:32,436 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 06:39:33] 2025-11-24 11:39:32,454 [wrapper] pilotpid: 1824919
[2025-11-24 06:39:33] 2025-11-24 11:39:32,456 [wrapper] Pilot exit status: 0
[2025-11-24 06:39:33] 2025-11-24 11:39:32,488 [wrapper] pandaids: 6895348448
[2025-11-24 06:39:33] 2025-11-24 11:39:33,010 [wrapper] cleanup supervisor_pilot  709847 1824920
[2025-11-24 06:39:33] 2025-11-24 11:39:33,024 [wrapper] Test setup, not cleaning
[2025-11-24 06:39:33] 2025-11-24 11:39:33,055 [wrapper] apfmon messages muted
[2025-11-24 06:39:33] 2025-11-24 11:39:33,092 [wrapper] ==== wrapper stdout END ====
[2025-11-24 06:39:33] 2025-11-24 11:39:33,125 [wrapper] ==== wrapper stderr END ====
[2025-11-24 06:39:33]  *** Error codes and diagnostics ***
[2025-11-24 06:39:33]     "exeErrorCode": 0,
[2025-11-24 06:39:33]     "exeErrorDiag": "",
[2025-11-24 06:39:33]     "pilotErrorCode": 0,
[2025-11-24 06:39:33]     "pilotErrorDiag": "",
[2025-11-24 06:39:33]  *** Listing of results directory ***
[2025-11-24 06:39:34] total 1306536
[2025-11-24 06:39:34] -rw-r--r--. 1 boincer umatlas    576529 Nov 22 14:25 pilot3.tar.gz
[2025-11-24 06:39:34] -rw-r--r--. 1 boincer umatlas      5112 Nov 22 14:54 queuedata.json
[2025-11-24 06:39:34] -rwx------. 1 boincer umatlas     36292 Nov 22 14:54 runpilot2-wrapper.sh
[2025-11-24 06:39:34] -rw-r--r--. 1 boincer umatlas       100 Nov 23 21:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 06:39:34] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 23 21:51 run_atlas
[2025-11-24 06:39:34] -rw-r--r--. 1 boincer umatlas       105 Nov 23 21:51 job.xml
[2025-11-24 06:39:34] -rw-r--r--. 2 boincer umatlas 408766456 Nov 23 21:51 EVNT.47483658._000481.pool.root.1
[2025-11-24 06:39:34] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 21:51 start_atlas.sh
[2025-11-24 06:39:34] drwxrwx--x. 2 boincer umatlas      4096 Nov 23 21:51 shared
[2025-11-24 06:39:34] -rw-r--r--. 2 boincer umatlas    590105 Nov 23 21:51 input.tar.gz
[2025-11-24 06:39:34] -rw-r--r--. 1 boincer umatlas         0 Nov 23 21:51 boinc_lockfile
[2025-11-24 06:39:34] -rw-r--r--. 1 boincer umatlas      2785 Nov 23 21:51 pandaJob.out
[2025-11-24 06:39:34] -rw-------. 1 boincer umatlas        57 Nov 23 21:51 setup.sh.local
[2025-11-24 06:39:34] -rw-------. 1 boincer umatlas    989786 Nov 23 21:52 agis_schedconf.cvmfs.json
[2025-11-24 06:39:34] drwx------. 5 boincer umatlas      4096 Nov 23 21:52 pilot3
[2025-11-24 06:39:34] -rw-r--r--. 1 boincer umatlas       533 Nov 24 06:06 boinc_task_state.xml
[2025-11-24 06:39:34] -rw-------. 1 boincer umatlas 913531683 Nov 24 06:35 HITS.47556137._004763.pool.root.1
[2025-11-24 06:39:34] -rw-r--r--. 1 boincer umatlas      7174 Nov 24 06:37 init_data.xml
[2025-11-24 06:39:34] -rw-------. 1 boincer umatlas      1075 Nov 24 06:37 memory_monitor_summary.json
[2025-11-24 06:39:34] -rw-------. 1 boincer umatlas   1516227 Nov 24 06:38 agis_ddmendpoints.agis.ALL.json
[2025-11-24 06:39:34] -rw-------. 1 boincer umatlas   1977751 Nov 24 06:38 log.47556137._004763.job.log.tgz.1
[2025-11-24 06:39:34] -rw-------. 1 boincer umatlas      8656 Nov 24 06:38 heartbeat.json
[2025-11-24 06:39:34] -rw-------. 1 boincer umatlas        95 Nov 24 06:39 pilot_heartbeat.json
[2025-11-24 06:39:34] -rw-------. 1 boincer umatlas      4825 Nov 24 06:39 pilotlog.txt
[2025-11-24 06:39:34] -rw-r--r--. 1 boincer umatlas      8192 Nov 24 06:39 boinc_mmap_file
[2025-11-24 06:39:34] -rw-r--r--. 1 boincer umatlas        29 Nov 24 06:39 wrapper_checkpoint.txt
[2025-11-24 06:39:34] -rw-------. 1 boincer umatlas   3870273 Nov 24 06:39 log.47556137._004763.job.log.1
[2025-11-24 06:39:34] -rw-------. 1 boincer umatlas       353 Nov 24 06:39 output.list
[2025-11-24 06:39:34] -rw-r--r--. 1 boincer umatlas       620 Nov 24 06:39 runtime_log
[2025-11-24 06:39:34] -rw-------. 1 boincer umatlas   5867520 Nov 24 06:39 result.tar.gz
[2025-11-24 06:39:34] -rw-r--r--. 1 boincer umatlas      9340 Nov 24 06:39 runtime_log.err
[2025-11-24 06:39:34] -rw-------. 1 boincer umatlas       665 Nov 24 06:39 psoLDmnr8g8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmKGIKDmgTYFsn.diag
[2025-11-24 06:39:34] -rw-r--r--. 1 boincer umatlas      2147 Nov 24 06:39 stderr.txt
[2025-11-24 06:39:34] HITS file was successfully produced:
[2025-11-24 06:39:34] -rw-------. 1 boincer umatlas 913531683 Nov 24 06:35 shared/HITS.pool.root.1
[2025-11-24 06:39:34]  *** Contents of shared directory: ***
[2025-11-24 06:39:34] total 1297648
[2025-11-24 06:39:34] -rw-r--r--. 2 boincer umatlas 408766456 Nov 23 21:51 ATLAS.root_0
[2025-11-24 06:39:34] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 21:51 start_atlas.sh
[2025-11-24 06:39:34] -rw-r--r--. 2 boincer umatlas    590105 Nov 23 21:51 input.tar.gz
[2025-11-24 06:39:34] -rw-------. 1 boincer umatlas 913531683 Nov 24 06:35 HITS.pool.root.1
[2025-11-24 06:39:34] -rw-------. 1 boincer umatlas   5867520 Nov 24 06:39 result.tar.gz
06:39:56 (1813536): run_atlas exited; CPU time 137976.940904
06:39:56 (1813536): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN