Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:59:20 (1955033): wrapper (7.7.26015): starting
18:59:20 (1955033): wrapper: running run_atlas (--nthreads 12)
[2025-11-23 18:59:20] Arguments: --nthreads 12
[2025-11-23 18:59:20] Threads: 12
[2025-11-23 18:59:20] Checking for CVMFS
[2025-11-23 18:59:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 18:59:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 18:59:21] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 18:59:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 18:59:21] 2.11.5.0 831512 24823 346396 153229 3 417 33575244 45568001 12012 130560 0 116987253 99.738 92161627 22953 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-23 18:59:21] CVMFS is ok
[2025-11-23 18:59:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 18:59:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 18:59:21] Further information can be found at the LHC@home message board.
[2025-11-23 18:59:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 18:59:21] Checking for apptainer binary...
[2025-11-23 18:59:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 18:59:21] Running /usr/bin/apptainer --version
[2025-11-23 18:59:21] apptainer version 1.4.1-1.el9
[2025-11-23 18:59:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 18:59:21] wns0042.triumf.lcg
[2025-11-23 18:59:21] apptainer works
[2025-11-23 18:59:21] Set ATHENA_PROC_NUMBER=12
[2025-11-23 18:59:21] Set ATHENA_CORE_NUMBER=12
[2025-11-23 18:59:21] Starting ATLAS job with PandaID=6895365551
[2025-11-23 18:59:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 19:07:54]  *** The last 200 lines of the pilot log: ***
[2025-11-23 19:07:54] 2025-11-24 03:07:09,133 | WARNING  | wrong length of table data, x=[1763953259.0, 1763953320.0, 1763953381.0, 1763953442.0], y=[2139.0, 468939.0, 890242.0, 525162.0] (must be same and length>=4)
[2025-11-23 19:07:54] 2025-11-24 03:07:09,134 | INFO     | could have reported an average CPU frequency of 1329 MHz (4 samples)
[2025-11-23 19:07:54] 2025-11-24 03:07:09,134 | INFO     | ..............................
[2025-11-23 19:07:54] 2025-11-24 03:07:09,135 | INFO     | . Timing measurements:
[2025-11-23 19:07:54] 2025-11-24 03:07:09,135 | INFO     | . get job = 0 s
[2025-11-23 19:07:54] 2025-11-24 03:07:09,135 | INFO     | . initial setup = 4 s
[2025-11-23 19:07:54] 2025-11-24 03:07:09,135 | INFO     | . payload setup = 12 s
[2025-11-23 19:07:54] 2025-11-24 03:07:09,135 | INFO     | . stage-in = 0 s
[2025-11-23 19:07:54] 2025-11-24 03:07:09,135 | INFO     | . payload execution = 242 s
[2025-11-23 19:07:54] 2025-11-24 03:07:09,135 | INFO     | . stage-out = 0 s
[2025-11-23 19:07:54] 2025-11-24 03:07:09,135 | INFO     | . log creation = 0 s
[2025-11-23 19:07:54] 2025-11-24 03:07:09,135 | INFO     | ..............................
[2025-11-23 19:07:54] 2025-11-24 03:07:09,136 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-23 19:07:54] 2025-11-24 03:07:09,136 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895365551/pilotlog.txt
[2025-11-23 19:07:54] 2025-11-24 03:07:09,210 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-23 19:07:54] - Log from pilotlog.txt -
[2025-11-23 19:07:54] 2025-11-24 03:07:09,122 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6895365551/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 19:07:54] 2025-11-24 03:07:09,123 | INFO     | extracted standard info from prmon json
[2025-11-23 19:07:54] 2025-11-24 03:07:09,123 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 19:07:54] 2025-11-24 03:07:09,123 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 19:07:54] 2025-11-24 03:07:09,124 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-23 19:07:54] 2025-11-24 03:07:09,128 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-23 19:07:54] 2025-11-24 03:07:09,133 | WARNING  | wrong length of table data, x=[1763953259.0, 1763953320.0, 1763953381.0, 1763953442.0], y=[2139.0, 468939.0, 890242.0, 525162.0] (must be same and length>=4)
[2025-11-23 19:07:54] 2025-11-24 03:07:09,134 | INFO     | could have reported an average CPU frequency of 1329 MHz (4 samples)
[2025-11-23 19:07:54] 2025-11-24 03:07:09,134 | INFO     | ..............................
[2025-11-23 19:07:54] 2025-11-24 03:07:09,135 | INFO     | . Timing measurements:
[2025-11-23 19:07:54] 2025-11-24 03:07:09,135 | INFO     | . get job = 0 s
[2025-11-23 19:07:54] 2025-11-24 03:07:09,135 | INFO     | . initial setup = 4 s
[2025-11-23 19:07:54] 2025-11-24 03:07:09,135 | INFO     | . payload setup = 12 s
[2025-11-23 19:07:54] 2025-11-24 03:07:09,135 | INFO     | . stage-in = 0 s
[2025-11-23 19:07:54] 2025-11-24 03:07:09,135 | INFO     | . payload execution = 242 s
[2025-11-23 19:07:54] 2025-11-24 03:07:09,135 | INFO     | . stage-out = 0 s
[2025-11-23 19:07:54] 2025-11-24 03:07:09,135 | INFO     | . log creation = 0 s
[2025-11-23 19:07:54] 2025-11-24 03:07:09,135 | INFO     | ..............................
[2025-11-23 19:07:54] 2025-11-24 03:07:09,136 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-23 19:07:54] 2025-11-24 03:07:09,136 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895365551/pilotlog.txt
[2025-11-23 19:07:54] 2025-11-24 03:07:09,211 | WARNING  | 
[2025-11-23 19:07:54] [begin log extracts]
[2025-11-23 19:07:54] - Log from pilotlog.txt -
[2025-11-23 19:07:54] 2025-11-24 03:07:09,122 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6895365551/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 19:07:54] 2025-11-24 03:07:09,123 | INFO     | extracted standard info from prmon json
[2025-11-23 19:07:54] 2025-11-24 03:07:09,123 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 19:07:54] 2025-11-24 03:07:09,123 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 19:07:54] 2025-11-24 03:07:09,124 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-23 19:07:54] 2025-11-24 03:07:09,128 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-23 19:07:54] 2025-11-24 03:07:09,133 | WARNING  | wrong length of table data, x=[1763953259.0, 1763953320.0, 1763953381.0, 1763953442.0], y=[2139.0, 468939.0, 890242.0, 525162.0] (must be same and length>=4)
[2025-11-23 19:07:54] 2025-11-24 03:07:09,134 | INFO     | could have reported an average CPU frequency of 1329 MHz (4 samples)
[2025-11-23 19:07:54] 2025-11-24 03:07:09,134 | INFO     | ..............................
[2025-11-23 19:07:54] 2025-11-24 03:07:09,135 | INFO     | . Timing measurements:
[2025-11-23 19:07:54] 2025-11-24 03:07:09,135 | INFO     | . get job = 0 s
[2025-11-23 19:07:54] 2025-11-24 03:07:09,135 | INFO     | . initial setup = 4 s
[2025-11-23 19:07:54] 2025-11-24 03:07:09,135 | INFO     | . payload setup = 12 s
[2025-11-23 19:07:54] 2025-11-24 03:07:09,135 | INFO     | . stage-in = 0 s
[2025-11-23 19:07:54] 2025-11-24 03:07:09,135 | INFO     | . payload execution = 242 s
[2025-11-23 19:07:54] 2025-11-24 03:07:09,135 | INFO     | . stage-out = 0 s
[2025-11-23 19:07:54] 2025-11-24 03:07:09,135 | INFO     | . log creation = 0 s
[2025-11-23 19:07:54] 2025-11-24 03:07:09,135 | INFO     | ..............................
[2025-11-23 19:07:54] 2025-11-24 03:07:09,136 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-23 19:07:54] 2025-11-24 03:07:09,136 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895365551/pilotlog.txt
[2025-11-23 19:07:54] [end log extracts]
[2025-11-23 19:07:54] 2025-11-24 03:07:09,211 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-23 19:07:54] 2025-11-24 03:07:09,212 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-23 19:07:54] 2025-11-24 03:07:09,327 | INFO     | time since job start (441s) is within the limit (172800.0s)
[2025-11-23 19:07:54] 2025-11-24 03:07:09,428 | INFO     | 
[2025-11-23 19:07:54] 2025-11-24 03:07:09,429 | INFO     | job summary report
[2025-11-23 19:07:54] 2025-11-24 03:07:09,429 | INFO     | --------------------------------------------------
[2025-11-23 19:07:54] 2025-11-24 03:07:09,429 | INFO     | PanDA job id: 6895365551
[2025-11-23 19:07:54] 2025-11-24 03:07:09,429 | INFO     | task id: 47556137
[2025-11-23 19:07:54] 2025-11-24 03:07:09,429 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-23 19:04:45,350 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-23 19:07:54] 2025-11-24 03:07:09,429 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-23 19:07:54] 2025-11-24 03:07:09,429 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 19:07:54] 2025-11-24 03:07:09,429 | INFO     | pilot state: failed 
[2025-11-23 19:07:54] 2025-11-24 03:07:09,430 | INFO     | transexitcode: 65
[2025-11-23 19:07:54] 2025-11-24 03:07:09,430 | INFO     | exeerrorcode: 65
[2025-11-23 19:07:54] 2025-11-24 03:07:09,430 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-23 19:07:54] 2025-11-24 03:07:09,430 | INFO     | exitcode: 65
[2025-11-23 19:07:54] 2025-11-24 03:07:09,430 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-23 19:07:54] 2025-11-24 03:07:09,430 | INFO     | cpuconsumptiontime: 84 s
[2025-11-23 19:07:54] 2025-11-24 03:07:09,430 | INFO     | nevents: 0
[2025-11-23 19:07:54] 2025-11-24 03:07:09,430 | INFO     | neventsw: 0
[2025-11-23 19:07:54] 2025-11-24 03:07:09,430 | INFO     | pid: 1965566
[2025-11-23 19:07:54] 2025-11-24 03:07:09,430 | INFO     | pgrp: 1965566
[2025-11-23 19:07:54] 2025-11-24 03:07:09,431 | INFO     | corecount: 12
[2025-11-23 19:07:54] 2025-11-24 03:07:09,431 | INFO     | event service: False
[2025-11-23 19:07:54] 2025-11-24 03:07:09,431 | INFO     | sizes: {0: 2298576, 1: 2298632, 2: 2298859, 3: 2298887, 14: 2298887, 16: 2299177, 25: 2299333, 258: 2324814, 259: 2329160, 395: 2329298}
[2025-11-23 19:07:54] 2025-11-24 03:07:09,431 | INFO     | --------------------------------------------------
[2025-11-23 19:07:54] 2025-11-24 03:07:09,431 | INFO     | 
[2025-11-23 19:07:54] 2025-11-24 03:07:09,431 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-23 19:07:54] 2025-11-24 03:07:09,494 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 19:07:54] 2025-11-24 03:07:09,495 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 19:07:54] 2025-11-24 03:07:09,495 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 19:07:54] 2025-11-24 03:07:09,495 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 19:07:54] 2025-11-24 03:07:09,495 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 19:07:54] 2025-11-24 03:07:09,495 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 19:07:54] 2025-11-24 03:07:09,495 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 19:07:54] 2025-11-24 03:07:09,496 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 19:07:54] 2025-11-24 03:07:09,496 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 19:07:54] 2025-11-24 03:07:09,496 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 19:07:54] 2025-11-24 03:07:09,496 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 19:07:54] 2025-11-24 03:07:09,496 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 19:07:54] 2025-11-24 03:07:09,496 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 19:07:54] 2025-11-24 03:07:09,496 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 19:07:54] 2025-11-24 03:07:09,496 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 19:07:54] 2025-11-24 03:07:09,496 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 19:07:54] 2025-11-24 03:07:09,497 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 19:07:54] 2025-11-24 03:07:09,497 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 19:07:54] 2025-11-24 03:07:09,497 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 19:07:54] 2025-11-24 03:07:09,497 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 19:07:54] 2025-11-24 03:07:09,497 | INFO     | job 6895365551 has completed (purged errors)
[2025-11-23 19:07:54] 2025-11-24 03:07:09,497 | INFO     | overall cleanup function is called
[2025-11-23 19:07:54] 2025-11-24 03:07:10,506 | INFO     | --- collectZombieJob: --- 10, [1965566]
[2025-11-23 19:07:54] 2025-11-24 03:07:10,506 | INFO     | zombie collector waiting for pid 1965566
[2025-11-23 19:07:54] 2025-11-24 03:07:10,506 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 19:07:54] 2025-11-24 03:07:10,507 | INFO     | collected zombie processes
[2025-11-23 19:07:54] 2025-11-24 03:07:10,507 | INFO     | will attempt to kill all subprocesses of pid=1965566
[2025-11-23 19:07:54] 2025-11-24 03:07:10,856 | INFO     | process IDs to be killed: [1965566] (in reverse order)
[2025-11-23 19:07:54] 2025-11-24 03:07:10,965 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 19:07:54] 2025-11-24 03:07:10,965 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 19:07:54] 2025-11-24 03:07:11,010 | INFO     | did not find any defunct processes belonging to 1965566
[2025-11-23 19:07:54] 2025-11-24 03:07:11,025 | INFO     | did not find any defunct processes belonging to 1965566
[2025-11-23 19:07:54] 2025-11-24 03:07:11,027 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 19:07:54] 2025-11-24 03:07:11,027 | INFO     | ready for new job
[2025-11-23 19:07:54] 2025-11-24 03:07:11,027 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 19:07:54] 2025-11-24 03:07:11,029 | INFO     | ***************************************
[2025-11-23 19:07:54] 2025-11-24 03:07:11,029 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 19:07:54] 2025-11-24 03:07:11,030 | INFO     | ***************************************
[2025-11-23 19:07:54] 2025-11-24 03:07:11,030 | INFO     | 
[2025-11-23 19:07:54] 2025-11-24 03:07:11,034 | INFO     | architecture information:
[2025-11-23 19:07:54] 2025-11-24 03:07:11,034 | INFO     | executing command: cat /etc/os-release
[2025-11-23 19:07:54] 2025-11-24 03:07:11,056 | INFO     | cat /etc/os-release:
[2025-11-23 19:07:54] NAME="CentOS Linux"
[2025-11-23 19:07:54] VERSION="7 (Core)"
[2025-11-23 19:07:54] ID="centos"
[2025-11-23 19:07:54] ID_LIKE="rhel fedora"
[2025-11-23 19:07:54] VERSION_ID="7"
[2025-11-23 19:07:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 19:07:54] ANSI_COLOR="0;31"
[2025-11-23 19:07:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 19:07:54] HOME_URL="https://www.centos.org/"
[2025-11-23 19:07:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 19:07:54] 
[2025-11-23 19:07:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 19:07:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 19:07:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 19:07:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 19:07:54] 
[2025-11-23 19:07:54] 2025-11-24 03:07:11,057 | INFO     | ***************************************
[2025-11-23 19:07:54] 2025-11-24 03:07:11,560 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-23 19:07:54] 2025-11-24 03:07:11,596 | INFO     | sufficient remaining disk space (1797252972544 B)
[2025-11-23 19:07:54] 2025-11-24 03:07:11,596 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 19:07:54] 2025-11-24 03:07:11,596 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 19:07:54] 2025-11-24 03:07:11,597 | INFO     | update_server=False
[2025-11-23 19:07:54] 2025-11-24 03:07:11,597 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 19:07:54] 2025-11-24 03:07:11,695 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 19:07:54] 2025-11-24 03:07:11,881 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 19:07:54] 2025-11-24 03:07:11,881 | INFO     | aborting loop
[2025-11-23 19:07:54] 2025-11-24 03:07:12,256 | INFO     | all job control threads have been joined
[2025-11-23 19:07:54] 2025-11-24 03:07:12,486 | INFO     | all data control threads have been joined
[2025-11-23 19:07:54] 2025-11-24 03:07:12,602 | INFO     | [job] retrieve thread has finished
[2025-11-23 19:07:54] 2025-11-24 03:07:12,826 | INFO     | all payload control threads have been joined
[2025-11-23 19:07:54] 2025-11-24 03:07:12,887 | INFO     | [job] job monitor thread has finished
[2025-11-23 19:07:54] 2025-11-24 03:07:13,004 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 19:07:54] 2025-11-24 03:07:13,079 | INFO     | [job] validate thread has finished
[2025-11-23 19:07:54] 2025-11-24 03:07:13,122 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 19:07:54] 2025-11-24 03:07:13,154 | INFO     | [payload] failed_post thread has finished
[2025-11-23 19:07:54] 2025-11-24 03:07:13,251 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 19:07:54] 2025-11-24 03:07:13,271 | INFO     | [job] control thread has finished
[2025-11-23 19:07:54] 2025-11-24 03:07:13,455 | INFO     | [data] copytool_in thread has finished
[2025-11-23 19:07:54] 2025-11-24 03:07:13,492 | INFO     | [data] control thread has finished
[2025-11-23 19:07:54] 2025-11-24 03:07:13,708 | INFO     | [data] copytool_out thread has finished
[2025-11-23 19:07:54] 2025-11-24 03:07:13,832 | INFO     | [payload] control thread has finished
[2025-11-23 19:07:54] 2025-11-24 03:07:13,904 | INFO     | [payload] validate_post thread has finished
[2025-11-23 19:07:54] 2025-11-24 03:07:14,057 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 19:07:54] 2025-11-24 03:07:14,443 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 19:07:54] 2025-11-24 03:07:14,713 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 19:07:54] 2025-11-24 03:07:15,449 | INFO     | [job] queue monitor thread has finished
[2025-11-23 19:07:54] 2025-11-24 03:07:18,724 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 19:07:54] 2025-11-24 03:07:42,898 | INFO     | PID=1958731 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-23 19:07:54] 2025-11-24 03:07:42,899 | INFO     | .. there are 14 such processes running
[2025-11-23 19:07:54] 2025-11-24 03:07:42,899 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 19:07:54] 2025-11-24 03:07:42,899 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 19:07:54] 2025-11-24 03:07:42,899 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 19:07:54] 2025-11-24 03:07:48,337 | INFO     | [monitor] cgroup control has ended
[2025-11-23 19:07:54] 2025-11-24 03:07:49,015 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139762724980544)>', '<ExcThread(monitor, started 139761641576192)>']
[2025-11-23 19:07:54] 2025-11-24 03:07:49,941 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 19:07:54] 2025-11-24 03:07:49,941 | INFO     | [monitor] control thread has ended
[2025-11-23 19:07:54] 2025-11-24 03:07:54,041 | INFO     | all workflow threads have been joined
[2025-11-23 19:07:54] 2025-11-24 03:07:54,041 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 19:07:54] 2025-11-24 03:07:54,042 | INFO     | traces error code: 0
[2025-11-23 19:07:54] 2025-11-24 03:07:54,042 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 19:07:54] 2025-11-24 03:07:54,205 [wrapper] ==== pilot stdout END ====
[2025-11-23 19:07:54] 2025-11-24 03:07:54,208 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 19:07:54] 2025-11-24 03:07:54,212 [wrapper] pilotpid: 1958731
[2025-11-23 19:07:54] 2025-11-24 03:07:54,215 [wrapper] Pilot exit status: 0
[2025-11-23 19:07:54] 2025-11-24 03:07:54,237 [wrapper] pandaids: 6895365551
[2025-11-23 19:07:54] 2025-11-24 03:07:54,305 [wrapper] cleanup supervisor_pilot 1958737 1958732
[2025-11-23 19:07:54] 2025-11-24 03:07:54,310 [wrapper] Test setup, not cleaning
[2025-11-23 19:07:54] 2025-11-24 03:07:54,314 [wrapper] apfmon messages muted
[2025-11-23 19:07:54] 2025-11-24 03:07:54,318 [wrapper] ==== wrapper stdout END ====
[2025-11-23 19:07:54] 2025-11-24 03:07:54,321 [wrapper] ==== wrapper stderr END ====
[2025-11-23 19:07:54]  *** Error codes and diagnostics ***
[2025-11-23 19:07:54]     "exeErrorCode": 65,
[2025-11-23 19:07:54]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-23 19:07:54]     "pilotErrorCode": 1305,
[2025-11-23 19:07:54]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-23 19:07:54]  *** Listing of results directory ***
[2025-11-23 19:07:54] total 404324
[2025-11-23 19:07:54] -rw-r--r--. 1 boinc boinc    576529 Nov 23 09:07 pilot3.tar.gz
[2025-11-23 19:07:54] -rw-r--r--. 1 boinc boinc      5112 Nov 23 09:27 queuedata.json
[2025-11-23 19:07:54] -rwx------. 1 boinc boinc     36292 Nov 23 09:28 runpilot2-wrapper.sh
[2025-11-23 19:07:54] -rw-r--r--. 1 boinc boinc       100 Nov 23 18:59 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 19:07:54] -rwxr-xr-x. 1 boinc boinc      7986 Nov 23 18:59 run_atlas
[2025-11-23 19:07:54] -rw-r--r--. 1 boinc boinc       105 Nov 23 18:59 job.xml
[2025-11-23 19:07:54] -rw-r--r--. 1 boinc boinc      6595 Nov 23 18:59 init_data.xml
[2025-11-23 19:07:54] -rw-r--r--. 2 boinc boinc 409765075 Nov 23 18:59 EVNT.47483658._000825.pool.root.1
[2025-11-23 19:07:54] -rw-r--r--. 2 boinc boinc     15847 Nov 23 18:59 start_atlas.sh
[2025-11-23 19:07:54] drwxrwx--x. 2 boinc boinc      4096 Nov 23 18:59 shared
[2025-11-23 19:07:54] -rw-r--r--. 2 boinc boinc    590106 Nov 23 18:59 input.tar.gz
[2025-11-23 19:07:54] -rw-r--r--. 1 boinc boinc         0 Nov 23 18:59 boinc_lockfile
[2025-11-23 19:07:54] -rw-r--r--. 1 boinc boinc      2785 Nov 23 18:59 pandaJob.out
[2025-11-23 19:07:54] -rw-------. 1 boinc boinc    989786 Nov 23 18:59 agis_schedconf.cvmfs.json
[2025-11-23 19:07:54] -rw-------. 1 boinc boinc   1526164 Nov 23 18:59 agis_ddmendpoints.agis.ALL.json
[2025-11-23 19:07:54] drwx------. 5 boinc boinc      4096 Nov 23 18:59 pilot3
[2025-11-23 19:07:54] -rw-r--r--. 1 boinc boinc       525 Nov 23 19:04 boinc_task_state.xml
[2025-11-23 19:07:54] -rw-------. 1 boinc boinc       995 Nov 23 19:04 memory_monitor_summary.json
[2025-11-23 19:07:54] -rw-------. 1 boinc boinc     51864 Nov 23 19:04 log.47556137._008113.job.log.tgz.1
[2025-11-23 19:07:54] -rw-------. 1 boinc boinc        95 Nov 23 19:06 pilot_heartbeat.json
[2025-11-23 19:07:54] -rw-------. 1 boinc boinc     10342 Nov 23 19:07 heartbeat.json
[2025-11-23 19:07:54] -rw-r--r--. 1 boinc boinc      8192 Nov 23 19:07 boinc_mmap_file
[2025-11-23 19:07:54] -rw-r--r--. 1 boinc boinc        23 Nov 23 19:07 wrapper_checkpoint.txt
[2025-11-23 19:07:54] -rw-------. 1 boinc boinc      4823 Nov 23 19:07 pilotlog.txt
[2025-11-23 19:07:54] -rw-------. 1 boinc boinc    120967 Nov 23 19:07 log.47556137._008113.job.log.1
[2025-11-23 19:07:54] -rw-------. 1 boinc boinc       186 Nov 23 19:07 output.list
[2025-11-23 19:07:54] -rw-r--r--. 1 boinc boinc       620 Nov 23 19:07 runtime_log
[2025-11-23 19:07:54] -rw-------. 1 boinc boinc    194560 Nov 23 19:07 result.tar.gz
[2025-11-23 19:07:54] -rw-r--r--. 1 boinc boinc      8636 Nov 23 19:07 runtime_log.err
[2025-11-23 19:07:54] -rw-------. 1 boinc boinc       644 Nov 23 19:07 4IbMDmg3Sh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmk3KKDmjrwyRm.diag
[2025-11-23 19:07:54] -rw-r--r--. 1 boinc boinc     22671 Nov 23 19:07 stderr.txt
[2025-11-23 19:07:54] No HITS result produced
[2025-11-23 19:07:54]  *** Contents of shared directory: ***
[2025-11-23 19:07:54] total 400952
[2025-11-23 19:07:54] -rw-r--r--. 2 boinc boinc 409765075 Nov 23 18:59 ATLAS.root_0
[2025-11-23 19:07:54] -rw-r--r--. 2 boinc boinc     15847 Nov 23 18:59 start_atlas.sh
[2025-11-23 19:07:54] -rw-r--r--. 2 boinc boinc    590106 Nov 23 18:59 input.tar.gz
[2025-11-23 19:07:54] -rw-------. 1 boinc boinc    194560 Nov 23 19:07 result.tar.gz
19:07:56 (1955033): run_atlas exited; CPU time 82.780504
19:07:56 (1955033): called boinc_finish(0)

</stderr_txt>
]]>

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