Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:04:14 (1231399): wrapper (7.7.26015): starting
00:04:14 (1231399): wrapper: running run_atlas (--nthreads 12)
[2025-11-25 00:04:14] Arguments: --nthreads 12
[2025-11-25 00:04:14] Threads: 12
[2025-11-25 00:04:14] Checking for CVMFS
[2025-11-25 00:04:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 00:04:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 00:04:17] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 00:04:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 00:04:19] 2.13.2.0 4057 31017 183828 153270 1 101 27180708 39288832 9546 16776704 0 21791320 99.655 18618780 38734 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 00:04:19] CVMFS is ok
[2025-11-25 00:04:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 00:04:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 00:04:20] Further information can be found at the LHC@home message board.
[2025-11-25 00:04:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 00:04:20] Checking for apptainer binary...
[2025-11-25 00:04:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 00:04:20] Running /usr/bin/apptainer --version
[2025-11-25 00:04:20] apptainer version 1.4.4-1.el9
[2025-11-25 00:04:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 00:04:22] c-210-24.aglt2.org
[2025-11-25 00:04:22] apptainer works
[2025-11-25 00:04:23] Set ATHENA_PROC_NUMBER=12
[2025-11-25 00:04:23] Set ATHENA_CORE_NUMBER=12
[2025-11-25 00:04:23] Starting ATLAS job with PandaID=6895348412
[2025-11-25 00:04:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 20:14:49]  *** The last 200 lines of the pilot log: ***
[2025-11-26 20:14:49] 2025-11-27 01:13:39,173 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:14:49] 2025-11-27 01:13:40,433 | INFO     | PID=1235639 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 20:14:49] 2025-11-27 01:13:40,433 | INFO     | .. there are 8 such processes running
[2025-11-26 20:14:49] 2025-11-27 01:13:41,435 | INFO     | time since job start (158831s) is within the limit (172800.0s)
[2025-11-26 20:14:49] 2025-11-27 01:13:41,713 | INFO     | monitor loop #8932: job 0:6895348412 is in state 'finished'
[2025-11-26 20:14:49] 2025-11-27 01:13:41,713 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:14:49] 2025-11-27 01:13:43,442 | INFO     | time since job start (158833s) is within the limit (172800.0s)
[2025-11-26 20:14:49] 2025-11-27 01:13:44,247 | INFO     | monitor loop #8933: job 0:6895348412 is in state 'finished'
[2025-11-26 20:14:49] 2025-11-27 01:13:44,247 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:14:49] 2025-11-27 01:13:45,482 | INFO     | time since job start (158835s) is within the limit (172800.0s)
[2025-11-26 20:14:49] 2025-11-27 01:13:46,759 | INFO     | monitor loop #8934: job 0:6895348412 is in state 'finished'
[2025-11-26 20:14:49] 2025-11-27 01:13:46,759 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:14:49] 2025-11-27 01:13:47,488 | INFO     | time since job start (158837s) is within the limit (172800.0s)
[2025-11-26 20:14:49] 2025-11-27 01:13:48,985 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 20:14:49] 2025-11-27 01:13:49,035 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.0515749999995
[2025-11-26 20:14:49] 2025-11-27 01:13:49,126 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6895348412/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 20:14:49] 2025-11-27 01:13:49,127 | INFO     | extracted standard info from prmon json
[2025-11-26 20:14:49] 2025-11-27 01:13:49,128 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 20:14:49] 2025-11-27 01:13:49,128 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 20:14:49] 2025-11-27 01:13:49,365 | INFO     | monitor loop #8935: job 0:6895348412 is in state 'finished'
[2025-11-26 20:14:49] 2025-11-27 01:13:49,365 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:14:49] 2025-11-27 01:13:49,540 | INFO     | time since job start (158839s) is within the limit (172800.0s)
[2025-11-26 20:14:49] 2025-11-27 01:13:49,594 | INFO     | fitting pss+swap vs Time
[2025-11-26 20:14:49] 2025-11-27 01:13:49,606 | INFO     | sum of square deviations: 5439351200851.337
[2025-11-26 20:14:49] 2025-11-27 01:13:50,010 | INFO     | sum of deviations: 12049988031770.828
[2025-11-26 20:14:49] 2025-11-27 01:13:50,010 | INFO     | mean x: 1764126624.276686
[2025-11-26 20:14:49] 2025-11-27 01:13:50,011 | INFO     | mean y: 3348059.819267823
[2025-11-26 20:14:49] 2025-11-27 01:13:50,011 | INFO     | intersect: -3904784348.644301
[2025-11-26 20:14:49] 2025-11-27 01:13:50,018 | INFO     | chi2: 98.49123658091904
[2025-11-26 20:14:49] 2025-11-27 01:13:50,027 | INFO     | sum of square deviations: 5407969679296.799
[2025-11-26 20:14:49] 2025-11-27 01:13:50,422 | INFO     | sum of deviations: 13282931491119.031
[2025-11-26 20:14:49] 2025-11-27 01:13:50,422 | INFO     | mean x: 1764126471.4837837
[2025-11-26 20:14:49] 2025-11-27 01:13:50,422 | INFO     | mean y: 3354062.8945945944
[2025-11-26 20:14:49] 2025-11-27 01:13:50,422 | INFO     | intersect: -4329653045.502439
[2025-11-26 20:14:49] 2025-11-27 01:13:50,430 | INFO     | chi2: 93.55971813591928
[2025-11-26 20:14:49] 2025-11-27 01:13:50,430 | INFO     | current chi2=93.55971813591928 (change=5.0070631826701515 %)
[2025-11-26 20:14:49] 2025-11-27 01:13:50,430 | INFO     | right removable region: 2589
[2025-11-26 20:14:49] 2025-11-27 01:13:50,438 | INFO     | sum of square deviations: 5408001903598.807
[2025-11-26 20:14:49] 2025-11-27 01:13:50,761 | INFO     | sum of deviations: 10846425846798.107
[2025-11-26 20:14:49] 2025-11-27 01:13:50,762 | INFO     | mean x: 1764126776.9911196
[2025-11-26 20:14:49] 2025-11-27 01:13:50,762 | INFO     | mean y: 3353922.483011583
[2025-11-26 20:14:49] 2025-11-27 01:13:50,762 | INFO     | intersect: -3534823506.4583325
[2025-11-26 20:14:49] 2025-11-27 01:13:50,770 | INFO     | chi2: 94.3153992237876
[2025-11-26 20:14:49] 2025-11-27 01:13:50,773 | INFO     | current chi2=94.3153992237876 (change=4.239805999085647 %)
[2025-11-26 20:14:49] 2025-11-27 01:13:50,773 | INFO     | left removable region: 10
[2025-11-26 20:14:49] 2025-11-27 01:13:50,781 | INFO     | sum of square deviations: 5339419145000.075
[2025-11-26 20:14:49] 2025-11-27 01:13:51,585 | INFO     | time since job start (158841s) is within the limit (172800.0s)
[2025-11-26 20:14:49] 2025-11-27 01:13:52,037 | INFO     | sum of deviations: 11166571585208.033
[2025-11-26 20:14:49] 2025-11-27 01:13:52,038 | INFO     | mean x: 1764126746.3544009
[2025-11-26 20:14:49] 2025-11-27 01:13:52,038 | INFO     | mean y: 3366327.9135323768
[2025-11-26 20:14:49] 2025-11-27 01:13:52,038 | INFO     | intersect: -3686032661.673803
[2025-11-26 20:14:49] 2025-11-27 01:13:52,042 | INFO     | chi2: 85.26476607097078
[2025-11-26 20:14:49] 2025-11-27 01:13:52,042 | INFO     | current memory leak: 2.09 B/s (using 2579 data points, chi2=85.26)
[2025-11-26 20:14:49] 2025-11-27 01:13:52,046 | INFO     | could have reported an average CPU frequency of 2599 MHz (89 samples)
[2025-11-26 20:14:49] 2025-11-27 01:13:52,047 | INFO     | ..............................
[2025-11-26 20:14:49] 2025-11-27 01:13:52,047 | INFO     | . Timing measurements:
[2025-11-26 20:14:49] 2025-11-27 01:13:52,047 | INFO     | . get job = 0 s
[2025-11-26 20:14:49] 2025-11-27 01:13:52,047 | INFO     | . initial setup = 7 s
[2025-11-26 20:14:49] 2025-11-27 01:13:52,047 | INFO     | . payload setup = 58 s
[2025-11-26 20:14:49] 2025-11-27 01:13:52,047 | INFO     | . stage-in = 1 s
[2025-11-26 20:14:49] 2025-11-27 01:13:52,047 | INFO     | . payload execution = 158590 s
[2025-11-26 20:14:49] 2025-11-27 01:13:52,048 | INFO     | . stage-out = 23 s
[2025-11-26 20:14:49] 2025-11-27 01:13:52,048 | INFO     | . log creation = 8 s
[2025-11-26 20:14:49] 2025-11-27 01:13:52,048 | INFO     | ..............................
[2025-11-26 20:14:49] 2025-11-27 01:13:52,610 | INFO     | 
[2025-11-26 20:14:49] 2025-11-27 01:13:52,610 | INFO     | job summary report
[2025-11-26 20:14:49] 2025-11-27 01:13:52,611 | INFO     | --------------------------------------------------
[2025-11-26 20:14:49] 2025-11-27 01:13:52,611 | INFO     | PanDA job id: 6895348412
[2025-11-26 20:14:49] 2025-11-27 01:13:52,611 | INFO     | task id: 47556137
[2025-11-26 20:14:49] 2025-11-27 01:13:52,611 | INFO     | errors: (none)
[2025-11-26 20:14:49] 2025-11-27 01:13:52,611 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 20:14:49] 2025-11-27 01:13:52,611 | INFO     | pilot state: finished 
[2025-11-26 20:14:49] 2025-11-27 01:13:52,611 | INFO     | transexitcode: 0
[2025-11-26 20:14:49] 2025-11-27 01:13:52,611 | INFO     | exeerrorcode: 0
[2025-11-26 20:14:49] 2025-11-27 01:13:52,611 | INFO     | exeerrordiag: 
[2025-11-26 20:14:49] 2025-11-27 01:13:52,611 | INFO     | exitcode: 0
[2025-11-26 20:14:49] 2025-11-27 01:13:52,611 | INFO     | exitmsg: OK
[2025-11-26 20:14:49] 2025-11-27 01:13:52,612 | INFO     | cpuconsumptiontime: 312586 s
[2025-11-26 20:14:49] 2025-11-27 01:13:52,612 | INFO     | nevents: 1000
[2025-11-26 20:14:49] 2025-11-27 01:13:52,612 | INFO     | neventsw: 0
[2025-11-26 20:14:49] 2025-11-27 01:13:52,612 | INFO     | pid: 1246927
[2025-11-26 20:14:49] 2025-11-27 01:13:52,612 | INFO     | pgrp: 1246927
[2025-11-26 20:14:49] 2025-11-27 01:13:52,612 | INFO     | corecount: 12
[2025-11-26 20:14:49] 2025-11-27 01:13:52,612 | INFO     | event service: False
[2025-11-26 20:14:49] 2025-11-27 01:13:52,612 | INFO     | sizes: {0: 2283430, 1: 2284031, 2: 2284143, 4: 2284143, 6: 2284342, 7: 2284370, 19: 2284526, 30: 2284554, 42: 2284582, 49: 2284900, 53: 2284928, 158652: 2382321, 1
[2025-11-26 20:14:49] 2025-11-27 01:13:52,612 | INFO     | --------------------------------------------------
[2025-11-26 20:14:49] 2025-11-27 01:13:52,612 | INFO     | 
[2025-11-26 20:14:49] 2025-11-27 01:13:52,613 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-26 20:14:49] 2025-11-27 01:13:52,884 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 20:14:49] 2025-11-27 01:13:52,885 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 20:14:49] 2025-11-27 01:13:52,885 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 20:14:49] 2025-11-27 01:13:52,885 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 20:14:49] 2025-11-27 01:13:52,885 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 20:14:49] 2025-11-27 01:13:52,885 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 20:14:49] 2025-11-27 01:13:52,886 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 20:14:49] 2025-11-27 01:13:52,886 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 20:14:49] 2025-11-27 01:13:52,886 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 20:14:49] 2025-11-27 01:13:52,886 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 20:14:49] 2025-11-27 01:13:52,886 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 20:14:49] 2025-11-27 01:13:52,886 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 20:14:49] 2025-11-27 01:13:52,886 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 20:14:49] 2025-11-27 01:13:52,886 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 20:14:49] 2025-11-27 01:13:52,887 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 20:14:49] 2025-11-27 01:13:52,887 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 20:14:49] 2025-11-27 01:13:52,887 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 20:14:49] 2025-11-27 01:13:52,887 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 20:14:49] 2025-11-27 01:13:52,887 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 20:14:49] 2025-11-27 01:13:52,887 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 20:14:49] 2025-11-27 01:13:52,888 | INFO     | job 6895348412 has completed (purged errors)
[2025-11-26 20:14:49] 2025-11-27 01:13:52,888 | INFO     | overall cleanup function is called
[2025-11-26 20:14:49] 2025-11-27 01:13:53,959 | INFO     | --- collectZombieJob: --- 10, [1246927]
[2025-11-26 20:14:49] 2025-11-27 01:13:53,959 | INFO     | zombie collector waiting for pid 1246927
[2025-11-26 20:14:49] 2025-11-27 01:13:53,960 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 20:14:49] 2025-11-27 01:13:53,960 | INFO     | collected zombie processes
[2025-11-26 20:14:49] 2025-11-27 01:13:53,960 | INFO     | will attempt to kill all subprocesses of pid=1246927
[2025-11-26 20:14:49] 2025-11-27 01:13:56,341 | INFO     | process IDs to be killed: [1246927] (in reverse order)
[2025-11-26 20:14:49] 2025-11-27 01:13:57,044 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 20:14:49] 2025-11-27 01:13:57,045 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 20:14:49] 2025-11-27 01:13:57,174 | INFO     | did not find any defunct processes belonging to 1246927
[2025-11-26 20:14:49] 2025-11-27 01:13:57,248 | INFO     | did not find any defunct processes belonging to 1246927
[2025-11-26 20:14:49] 2025-11-27 01:13:57,286 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 20:14:49] 2025-11-27 01:13:57,286 | INFO     | ready for new job
[2025-11-26 20:14:49] 2025-11-27 01:13:57,286 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 20:14:49] 2025-11-27 01:13:57,347 | INFO     | ***************************************
[2025-11-26 20:14:49] 2025-11-27 01:13:57,347 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 20:14:49] 2025-11-27 01:13:57,347 | INFO     | ***************************************
[2025-11-26 20:14:49] 2025-11-27 01:13:57,347 | INFO     | 
[2025-11-26 20:14:49] 2025-11-27 01:13:57,378 | INFO     | architecture information:
[2025-11-26 20:14:49] 2025-11-27 01:13:57,408 | INFO     | executing command: cat /etc/os-release
[2025-11-26 20:14:49] 2025-11-27 01:13:57,639 | INFO     | cat /etc/os-release:
[2025-11-26 20:14:49] NAME="CentOS Linux"
[2025-11-26 20:14:49] VERSION="7 (Core)"
[2025-11-26 20:14:49] ID="centos"
[2025-11-26 20:14:49] ID_LIKE="rhel fedora"
[2025-11-26 20:14:49] VERSION_ID="7"
[2025-11-26 20:14:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 20:14:49] ANSI_COLOR="0;31"
[2025-11-26 20:14:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 20:14:49] HOME_URL="https://www.centos.org/"
[2025-11-26 20:14:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 20:14:49] 
[2025-11-26 20:14:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 20:14:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 20:14:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 20:14:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 20:14:49] 
[2025-11-26 20:14:49] 2025-11-27 01:13:57,639 | INFO     | ***************************************
[2025-11-26 20:14:49] 2025-11-27 01:13:58,142 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-26 20:14:49] 2025-11-27 01:13:58,411 | INFO     | sufficient remaining disk space (49914314752 B)
[2025-11-26 20:14:49] 2025-11-27 01:13:58,411 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 20:14:49] 2025-11-27 01:13:58,412 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 20:14:49] 2025-11-27 01:13:58,412 | INFO     | update_server=False
[2025-11-26 20:14:49] 2025-11-27 01:13:58,412 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 20:14:49] 2025-11-27 01:13:58,413 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 20:14:49] 2025-11-27 01:13:58,435 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 20:14:49] 2025-11-27 01:13:58,443 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 20:14:49] 2025-11-27 01:13:58,444 | INFO     | aborting loop
[2025-11-26 20:14:49] 2025-11-27 01:13:58,453 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 20:14:49] 2025-11-27 01:13:59,261 | INFO     | all payload control threads have been joined
[2025-11-26 20:14:49] 2025-11-27 01:13:59,317 | INFO     | all data control threads have been joined
[2025-11-26 20:14:49] 2025-11-27 01:13:59,358 | INFO     | all job control threads have been joined
[2025-11-26 20:14:49] 2025-11-27 01:13:59,418 | INFO     | [job] retrieve thread has finished
[2025-11-26 20:14:49] 2025-11-27 01:13:59,423 | INFO     | [job] queue monitor thread has finished
[2025-11-26 20:14:49] 2025-11-27 01:13:59,448 | INFO     | [job] job monitor thread has finished
[2025-11-26 20:14:49] 2025-11-27 01:14:00,055 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 20:14:49] 2025-11-27 01:14:00,058 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 20:14:49] 2025-11-27 01:14:00,060 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 20:14:49] 2025-11-27 01:14:00,072 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 20:14:49] 2025-11-27 01:14:00,267 | INFO     | [payload] control thread has finished
[2025-11-26 20:14:49] 2025-11-27 01:14:00,323 | INFO     | [data] control thread has finished
[2025-11-26 20:14:49] 2025-11-27 01:14:00,364 | INFO     | [payload] failed_post thread has finished
[2025-11-26 20:14:49] 2025-11-27 01:14:00,365 | INFO     | [job] control thread has finished
[2025-11-26 20:14:49] 2025-11-27 01:14:00,443 | INFO     | [data] copytool_out thread has finished
[2025-11-26 20:14:49] 2025-11-27 01:14:00,628 | INFO     | [job] validate thread has finished
[2025-11-26 20:14:49] 2025-11-27 01:14:00,638 | INFO     | [data] copytool_in thread has finished
[2025-11-26 20:14:49] 2025-11-27 01:14:00,867 | INFO     | [payload] validate_post thread has finished
[2025-11-26 20:14:49] 2025-11-27 01:14:02,494 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 20:14:49] 2025-11-27 01:14:26,187 | INFO     | PID=1235639 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 20:14:49] 2025-11-27 01:14:26,191 | INFO     | .. there are 8 such processes running
[2025-11-26 20:14:49] 2025-11-27 01:14:26,192 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 20:14:49] 2025-11-27 01:14:26,192 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 20:14:49] 2025-11-27 01:14:26,192 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 20:14:49] 2025-11-27 01:14:40,311 | INFO     | [monitor] cgroup control has ended
[2025-11-26 20:14:49] 2025-11-27 01:14:41,696 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140419093346112)>', '<ExcThread(monitor, started 140418368919296)>']
[2025-11-26 20:14:49] 2025-11-27 01:14:42,353 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 20:14:49] 2025-11-27 01:14:42,353 | INFO     | [monitor] control thread has ended
[2025-11-26 20:14:49] 2025-11-27 01:14:46,722 | INFO     | all workflow threads have been joined
[2025-11-26 20:14:49] 2025-11-27 01:14:46,722 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 20:14:49] 2025-11-27 01:14:46,723 | INFO     | traces error code: 0
[2025-11-26 20:14:49] 2025-11-27 01:14:46,723 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 20:14:49] 2025-11-27 01:14:47,422 [wrapper] ==== pilot stdout END ====
[2025-11-26 20:14:49] 2025-11-27 01:14:47,426 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 20:14:49] 2025-11-27 01:14:47,429 [wrapper] pilotpid: 1235639
[2025-11-26 20:14:49] 2025-11-27 01:14:47,433 [wrapper] Pilot exit status: 0
[2025-11-26 20:14:49] 2025-11-27 01:14:47,552 [wrapper] pandaids: 6895348412
[2025-11-26 20:14:49] 2025-11-27 01:14:47,607 [wrapper] cleanup supervisor_pilot  823769 1235640
[2025-11-26 20:14:49] 2025-11-27 01:14:47,627 [wrapper] Test setup, not cleaning
[2025-11-26 20:14:49] 2025-11-27 01:14:47,663 [wrapper] apfmon messages muted
[2025-11-26 20:14:49] 2025-11-27 01:14:47,721 [wrapper] ==== wrapper stdout END ====
[2025-11-26 20:14:49] 2025-11-27 01:14:47,747 [wrapper] ==== wrapper stderr END ====
[2025-11-26 20:14:49]  *** Error codes and diagnostics ***
[2025-11-26 20:14:49]     "exeErrorCode": 0,
[2025-11-26 20:14:49]     "exeErrorDiag": "",
[2025-11-26 20:14:49]     "pilotErrorCode": 0,
[2025-11-26 20:14:49]     "pilotErrorDiag": "",
[2025-11-26 20:14:49]  *** Listing of results directory ***
[2025-11-26 20:14:49] total 1336620
[2025-11-26 20:14:49] -rw-r--r--. 1 boincer umatlas    576529 Nov 22 14:25 pilot3.tar.gz
[2025-11-26 20:14:49] -rw-r--r--. 1 boincer umatlas      5112 Nov 22 14:44 queuedata.json
[2025-11-26 20:14:49] -rwx------. 1 boincer umatlas     36292 Nov 22 14:47 runpilot2-wrapper.sh
[2025-11-26 20:14:49] -rw-r--r--. 1 boincer umatlas       100 Nov 25 00:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 20:14:49] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 00:04 run_atlas
[2025-11-26 20:14:49] -rw-r--r--. 1 boincer umatlas       105 Nov 25 00:04 job.xml
[2025-11-26 20:14:49] -rw-r--r--. 2 boincer umatlas 409643552 Nov 25 00:04 EVNT.47483658._000477.pool.root.1
[2025-11-26 20:14:49] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:04 start_atlas.sh
[2025-11-26 20:14:49] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 00:04 shared
[2025-11-26 20:14:49] -rw-r--r--. 2 boincer umatlas    590101 Nov 25 00:04 input.tar.gz
[2025-11-26 20:14:49] -rw-r--r--. 1 boincer umatlas         0 Nov 25 00:04 boinc_lockfile
[2025-11-26 20:14:49] -rw-r--r--. 1 boincer umatlas      2784 Nov 25 00:04 pandaJob.out
[2025-11-26 20:14:49] -rw-------. 1 boincer umatlas        57 Nov 25 00:04 setup.sh.local
[2025-11-26 20:14:49] -rw-------. 1 boincer umatlas    991801 Nov 25 00:06 agis_schedconf.cvmfs.json
[2025-11-26 20:14:49] drwx------. 5 boincer umatlas      4096 Nov 25 00:06 pilot3
[2025-11-26 20:14:49] -rw-r--r--. 1 boincer umatlas       534 Nov 26 16:46 boinc_task_state.xml
[2025-11-26 20:14:49] -rw-------. 1 boincer umatlas 909483209 Nov 26 20:06 HITS.47556137._004727.pool.root.1
[2025-11-26 20:14:49] -rw-------. 1 boincer umatlas      1070 Nov 26 20:12 memory_monitor_summary.json
[2025-11-26 20:14:49] -rw-------. 1 boincer umatlas   1516240 Nov 26 20:12 agis_ddmendpoints.agis.ALL.json
[2025-11-26 20:14:49] -rw-------. 1 boincer umatlas   3665198 Nov 26 20:12 log.47556137._004727.job.log.tgz.1
[2025-11-26 20:14:49] -rw-r--r--. 1 boincer umatlas      6660 Nov 26 20:13 init_data.xml
[2025-11-26 20:14:49] -rw-------. 1 boincer umatlas      8661 Nov 26 20:13 heartbeat.json
[2025-11-26 20:14:49] -rw-------. 1 boincer umatlas        95 Nov 26 20:14 pilot_heartbeat.json
[2025-11-26 20:14:49] -rw-------. 1 boincer umatlas      4823 Nov 26 20:14 pilotlog.txt
[2025-11-26 20:14:49] -rw-------. 1 boincer umatlas  19159658 Nov 26 20:14 log.47556137._004727.job.log.1
[2025-11-26 20:14:49] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 20:14 boinc_mmap_file
[2025-11-26 20:14:49] -rw-r--r--. 1 boincer umatlas        30 Nov 26 20:14 wrapper_checkpoint.txt
[2025-11-26 20:14:49] -rw-------. 1 boincer umatlas       353 Nov 26 20:14 output.list
[2025-11-26 20:14:49] -rw-r--r--. 1 boincer umatlas       620 Nov 26 20:14 runtime_log
[2025-11-26 20:14:49] -rw-------. 1 boincer umatlas  22845440 Nov 26 20:14 result.tar.gz
[2025-11-26 20:14:49] -rw-------. 1 boincer umatlas       668 Nov 26 20:14 sG3KDmgk8g8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmxFIKDmHDd14n.diag
[2025-11-26 20:14:49] -rw-r--r--. 1 boincer umatlas      9346 Nov 26 20:14 runtime_log.err
[2025-11-26 20:14:49] -rw-r--r--. 1 boincer umatlas     21904 Nov 26 20:14 stderr.txt
[2025-11-26 20:14:49] HITS file was successfully produced:
[2025-11-26 20:14:49] -rw-------. 1 boincer umatlas 909483209 Nov 26 20:06 shared/HITS.pool.root.1
[2025-11-26 20:14:49]  *** Contents of shared directory: ***
[2025-11-26 20:14:49] total 1311128
[2025-11-26 20:14:49] -rw-r--r--. 2 boincer umatlas 409643552 Nov 25 00:04 ATLAS.root_0
[2025-11-26 20:14:49] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:04 start_atlas.sh
[2025-11-26 20:14:49] -rw-r--r--. 2 boincer umatlas    590101 Nov 25 00:04 input.tar.gz
[2025-11-26 20:14:49] -rw-------. 1 boincer umatlas 909483209 Nov 26 20:06 HITS.pool.root.1
[2025-11-26 20:14:49] -rw-------. 1 boincer umatlas  22845440 Nov 26 20:14 result.tar.gz
20:14:51 (1231399): run_atlas exited; CPU time 314473.703922
20:14:51 (1231399): called boinc_finish(0)

</stderr_txt>
]]>

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