Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
03:53:11 (1030172): wrapper (7.7.26015): starting
03:53:11 (1030172): wrapper: running run_atlas (--nthreads 3)
[2025-11-24 03:53:11] Arguments: --nthreads 3
[2025-11-24 03:53:11] Threads: 3
[2025-11-24 03:53:11] Checking for CVMFS
[2025-11-24 03:53:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 03:53:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 03:53:11] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 03:53:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 03:53:11] 2.9.2.0 154488 187 61676 153229 0 88 34937478 36864001 0 130560 0 2629298 100.000 3905 3109 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-24 03:53:11] CVMFS is ok
[2025-11-24 03:53:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 03:53:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 03:53:11] Further information can be found at the LHC@home message board.
[2025-11-24 03:53:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 03:53:11] Checking for apptainer binary...
[2025-11-24 03:53:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 03:53:11] Running /usr/bin/apptainer --version
[2025-11-24 03:53:11] apptainer version 1.4.1-1.1
[2025-11-24 03:53:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 03:53:11] thA335
[2025-11-24 03:53:11] apptainer works
[2025-11-24 03:53:11] Set ATHENA_PROC_NUMBER=3
[2025-11-24 03:53:11] Set ATHENA_CORE_NUMBER=3
[2025-11-24 03:53:11] Starting ATLAS job with PandaID=6894253995
[2025-11-24 03:53:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 03:57:30]  *** The last 200 lines of the pilot log: ***
[2025-11-24 03:57:30] 2025-11-24 02:56:42,467 | INFO     | update_server=False
[2025-11-24 03:57:30] 2025-11-24 02:56:42,467 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 03:57:30] 2025-11-24 02:56:42,467 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 03:57:30] 2025-11-24 02:56:42,467 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 03:57:30] 2025-11-24 02:56:42,467 | INFO     | aborting loop
[2025-11-24 03:57:30] 2025-11-24 02:56:43,243 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 03:57:30] 2025-11-24 02:56:43,383 | INFO     | all job control threads have been joined
[2025-11-24 03:57:30] 2025-11-24 02:56:43,457 | INFO     | all data control threads have been joined
[2025-11-24 03:57:30] 2025-11-24 02:56:43,473 | INFO     | [job] queue monitor thread has finished
[2025-11-24 03:57:30] 2025-11-24 02:56:43,473 | INFO     | [job] retrieve thread has finished
[2025-11-24 03:57:30] 2025-11-24 02:56:43,474 | INFO     | [job] job monitor thread has finished
[2025-11-24 03:57:30] 2025-11-24 02:56:43,523 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 03:57:30] 2025-11-24 02:56:43,713 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 03:57:30] 2025-11-24 02:56:43,829 | INFO     | [payload] failed_post thread has finished
[2025-11-24 03:57:30] 2025-11-24 02:56:43,935 | INFO     | all payload control threads have been joined
[2025-11-24 03:57:30] 2025-11-24 02:56:44,389 | INFO     | [job] control thread has finished
[2025-11-24 03:57:30] 2025-11-24 02:56:44,463 | INFO     | [data] control thread has finished
[2025-11-24 03:57:30] 2025-11-24 02:56:44,755 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 03:57:30] 2025-11-24 02:56:44,786 | INFO     | [payload] validate_post thread has finished
[2025-11-24 03:57:30] 2025-11-24 02:56:44,833 | INFO     | [data] copytool_in thread has finished
[2025-11-24 03:57:30] 2025-11-24 02:56:44,883 | INFO     | [job] validate thread has finished
[2025-11-24 03:57:30] 2025-11-24 02:56:44,941 | INFO     | [payload] control thread has finished
[2025-11-24 03:57:30] 2025-11-24 02:56:44,960 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 03:57:30] 2025-11-24 02:56:45,249 | INFO     | [data] copytool_out thread has finished
[2025-11-24 03:57:30] 2025-11-24 02:56:45,549 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 03:57:30] 2025-11-24 02:56:49,557 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 03:57:30] 2025-11-24 02:57:12,538 | INFO     | PID=1033913 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 03:57:30] 2025-11-24 02:57:12,538 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 03:57:30] 2025-11-24 02:57:12,538 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 03:57:30] 2025-11-24 02:57:12,538 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 03:57:30] 2025-11-24 02:57:23,665 | INFO     | [monitor] cgroup control has ended
[2025-11-24 03:57:30] 2025-11-24 02:57:25,382 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140402726278976)>', '<ExcThread(monitor, started 140402371831552)>']
[2025-11-24 03:57:30] 2025-11-24 02:57:25,606 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 03:57:30] 2025-11-24 02:57:25,607 | INFO     | [monitor] control thread has ended
[2025-11-24 03:57:30] 2025-11-24 02:57:30,408 | INFO     | all workflow threads have been joined
[2025-11-24 03:57:30] 2025-11-24 02:57:30,409 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 03:57:30] 2025-11-24 02:57:30,409 | INFO     | traces error code: 0
[2025-11-24 03:57:30] 2025-11-24 02:57:30,410 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 03:57:30] 2025-11-24 02:57:30,453 [wrapper] ==== pilot stdout END ====
[2025-11-24 03:57:30] 2025-11-24 02:57:30,456 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 03:57:30] 2025-11-24 02:57:30,459 [wrapper] pilotpid: 1033913
[2025-11-24 03:57:30] 2025-11-24 02:57:30,462 [wrapper] Pilot exit status: 0
[2025-11-24 03:57:30] 2025-11-24 02:57:30,469 [wrapper] pandaids: 6894253995
[2025-11-24 03:57:30] 2025-11-24 02:57:30,486 [wrapper] cleanup supervisor_pilot 1033919 1033914
[2025-11-24 03:57:30] 2025-11-24 02:57:30,489 [wrapper] Test setup, not cleaning
[2025-11-24 03:57:30] 2025-11-24 02:57:30,492 [wrapper] apfmon messages muted
[2025-11-24 03:57:30] 2025-11-24 02:57:30,495 [wrapper] ==== wrapper stdout END ====
[2025-11-24 03:57:30] 2025-11-24 02:57:30,498 [wrapper] ==== wrapper stderr END ====
[2025-11-24 03:57:30]  *** Error codes and diagnostics ***
[2025-11-24 03:57:30]     "exeErrorCode": 65,
[2025-11-24 03:57:30]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-24 03:57:30]     "pilotErrorCode": 1305,
[2025-11-24 03:57:30]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-24 03:57:30]  *** Listing of results directory ***
[2025-11-24 03:57:30] total 404860
[2025-11-24 03:57:30] -rw-r--r-- 1 boinc boinc    576529 Nov 21 03:10 pilot3.tar.gz
[2025-11-24 03:57:30] -rw-r--r-- 1 boinc boinc      5112 Nov 21 03:45 queuedata.json
[2025-11-24 03:57:30] -rwx------ 1 boinc boinc     36292 Nov 21 03:48 runpilot2-wrapper.sh
[2025-11-24 03:57:30] -rw-r--r-- 1 boinc boinc       100 Nov 24 03:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 03:57:30] -rwxr-xr-x 1 boinc boinc      7986 Nov 24 03:53 run_atlas
[2025-11-24 03:57:30] -rw-r--r-- 1 boinc boinc       105 Nov 24 03:53 job.xml
[2025-11-24 03:57:30] -rw-r--r-- 2 boinc boinc 410372582 Nov 24 03:53 EVNT.47493127._002133.pool.root.1
[2025-11-24 03:57:30] -rw-r--r-- 2 boinc boinc    590103 Nov 24 03:53 input.tar.gz
[2025-11-24 03:57:30] -rw-r--r-- 2 boinc boinc     15847 Nov 24 03:53 start_atlas.sh
[2025-11-24 03:57:30] drwxrwx--x 2 boinc boinc      4096 Nov 24 03:53 shared
[2025-11-24 03:57:30] -rw-r--r-- 1 boinc boinc         0 Nov 24 03:53 boinc_setup_complete
[2025-11-24 03:57:30] -rw-r--r-- 1 boinc boinc      6195 Nov 24 03:53 init_data.xml
[2025-11-24 03:57:30] -rw-r--r-- 1 boinc boinc         0 Nov 24 03:53 boinc_lockfile
[2025-11-24 03:57:30] -rw-r--r-- 1 boinc boinc      2786 Nov 24 03:53 pandaJob.out
[2025-11-24 03:57:30] -rw------- 1 boinc boinc    989786 Nov 24 03:53 agis_schedconf.cvmfs.json
[2025-11-24 03:57:30] -rw------- 1 boinc boinc   1526164 Nov 24 03:53 agis_ddmendpoints.agis.ALL.json
[2025-11-24 03:57:30] drwx------ 5 boinc boinc      4096 Nov 24 03:53 pilot3
[2025-11-24 03:57:30] -rw-r--r-- 1 boinc boinc       523 Nov 24 03:54 boinc_task_state.xml
[2025-11-24 03:57:30] -rw------- 1 boinc boinc       945 Nov 24 03:54 memory_monitor_summary.json
[2025-11-24 03:57:30] -rw------- 1 boinc boinc     56082 Nov 24 03:54 log.47533967._001042.job.log.tgz.1
[2025-11-24 03:57:30] -rw------- 1 boinc boinc        95 Nov 24 03:56 pilot_heartbeat.json
[2025-11-24 03:57:30] -rw------- 1 boinc boinc      8389 Nov 24 03:56 heartbeat.json
[2025-11-24 03:57:30] -rw-r--r-- 1 boinc boinc        23 Nov 24 03:57 wrapper_checkpoint.txt
[2025-11-24 03:57:30] -rw-r--r-- 1 boinc boinc      8192 Nov 24 03:57 boinc_mmap_file
[2025-11-24 03:57:30] -rw------- 1 boinc boinc      4752 Nov 24 03:57 pilotlog.txt
[2025-11-24 03:57:30] -rw------- 1 boinc boinc     93869 Nov 24 03:57 log.47533967._001042.job.log.1
[2025-11-24 03:57:30] -rw------- 1 boinc boinc       186 Nov 24 03:57 output.list
[2025-11-24 03:57:30] -rw-r--r-- 1 boinc boinc       620 Nov 24 03:57 runtime_log
[2025-11-24 03:57:30] -rw------- 1 boinc boinc    174080 Nov 24 03:57 result.tar.gz
[2025-11-24 03:57:30] -rw-r--r-- 1 boinc boinc      8744 Nov 24 03:57 runtime_log.err
[2025-11-24 03:57:30] -rw------- 1 boinc boinc       649 Nov 24 03:57 ZfXKDmQNWg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmFHHKDmrfuDZm.diag
[2025-11-24 03:57:30] -rw-r--r-- 1 boinc boinc      7788 Nov 24 03:57 stderr.txt
[2025-11-24 03:57:30] No HITS result produced
[2025-11-24 03:57:30]  *** Contents of shared directory: ***
[2025-11-24 03:57:30] total 401528
[2025-11-24 03:57:30] -rw-r--r-- 2 boinc boinc 410372582 Nov 24 03:53 ATLAS.root_0
[2025-11-24 03:57:30] -rw-r--r-- 2 boinc boinc    590103 Nov 24 03:53 input.tar.gz
[2025-11-24 03:57:30] -rw-r--r-- 2 boinc boinc     15847 Nov 24 03:53 start_atlas.sh
[2025-11-24 03:57:30] -rw------- 1 boinc boinc    174080 Nov 24 03:57 result.tar.gz
03:57:32 (1030172): run_atlas exited; CPU time 32.049434
03:57:32 (1030172): called boinc_finish(0)

</stderr_txt>
]]>

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