Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
21:26:47 (1606): wrapper (7.7.26015): starting
21:26:47 (1606): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 21:26:47] Arguments: --nthreads 8
[2025-11-23 21:26:47] Threads: 8
[2025-11-23 21:26:47] Checking for CVMFS
[2025-11-23 21:26:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 21:26:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 21:26:47] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 21:26:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 21:26:47] 2.11.2.0 5808 166890 108772 153229 0 81 11161900 18432001 2827 130560 0 109358993 99.948 8424740 6584 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-11-23 21:26:47] CVMFS is ok
[2025-11-23 21:26:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 21:26:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 21:26:47] Further information can be found at the LHC@home message board.
[2025-11-23 21:26:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 21:26:47] Checking for apptainer binary...
[2025-11-23 21:26:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 21:26:47] Running /usr/bin/apptainer --version
[2025-11-23 21:26:47] apptainer version 1.3.2-1.el7
[2025-11-23 21:26:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 21:26:48] c-9-34.aglt2.org
[2025-11-23 21:26:48] apptainer works
[2025-11-23 21:26:48] Set ATHENA_PROC_NUMBER=8
[2025-11-23 21:26:48] Set ATHENA_CORE_NUMBER=8
[2025-11-23 21:26:48] Starting ATLAS job with PandaID=6895355321
[2025-11-23 21:26:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 14:09:07]  *** The last 200 lines of the pilot log: ***
[2025-11-24 14:09:07] 2025-11-24 19:08:34,329 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 14:09:07] 2025-11-24 19:08:34,355 | INFO     | fitting pss+swap vs Time
[2025-11-24 14:09:07] 2025-11-24 19:08:34,357 | INFO     | sum of square deviations: 296339498741.98975
[2025-11-24 14:09:07] 2025-11-24 19:08:34,378 | INFO     | sum of deviations: 1342450584392.0713
[2025-11-24 14:09:07] 2025-11-24 19:08:34,378 | INFO     | mean x: 1763981259.7258883
[2025-11-24 14:09:07] 2025-11-24 19:08:34,378 | INFO     | mean y: 2860695.318781726
[2025-11-24 14:09:07] 2025-11-24 19:08:34,378 | INFO     | intersect: -7988168792.915078
[2025-11-24 14:09:07] 2025-11-24 19:08:34,379 | INFO     | chi2: 5.649693217272005
[2025-11-24 14:09:07] 2025-11-24 19:08:34,380 | INFO     | sum of square deviations: 291849827979.34155
[2025-11-24 14:09:07] 2025-11-24 19:08:34,403 | INFO     | sum of deviations: 1617455547347.626
[2025-11-24 14:09:07] 2025-11-24 19:08:34,403 | INFO     | mean x: 1763981107.2295918
[2025-11-24 14:09:07] 2025-11-24 19:08:34,403 | INFO     | mean y: 2870027.743877551
[2025-11-24 14:09:07] 2025-11-24 19:08:34,403 | INFO     | intersect: -9773257123.192358
[2025-11-24 14:09:07] 2025-11-24 19:08:34,404 | INFO     | chi2: 3.2138593852356094
[2025-11-24 14:09:07] 2025-11-24 19:08:34,404 | INFO     | current chi2=3.2138593852356094 (change=43.114444242559344 %)
[2025-11-24 14:09:07] 2025-11-24 19:08:34,405 | INFO     | sum of square deviations: 287405739466.6666
[2025-11-24 14:09:07] 2025-11-24 19:08:34,419 | INFO     | sum of deviations: 1780923832619.9329
[2025-11-24 14:09:07] 2025-11-24 19:08:34,420 | INFO     | mean x: 1763980954.7333333
[2025-11-24 14:09:07] 2025-11-24 19:08:34,420 | INFO     | mean y: 2875636.3497435898
[2025-11-24 14:09:07] 2025-11-24 19:08:34,420 | INFO     | intersect: -10927719307.237352
[2025-11-24 14:09:07] 2025-11-24 19:08:34,420 | INFO     | chi2: 2.3333368009200885
[2025-11-24 14:09:07] 2025-11-24 19:08:34,421 | INFO     | current chi2=2.3333368009200885 (change=27.39766986572654 %)
[2025-11-24 14:09:07] 2025-11-24 19:08:34,422 | INFO     | sum of square deviations: 283007000641.4635
[2025-11-24 14:09:07] 2025-11-24 19:08:34,443 | INFO     | sum of deviations: 1868734432538.8228
[2025-11-24 14:09:07] 2025-11-24 19:08:34,444 | INFO     | mean x: 1763980802.2371135
[2025-11-24 14:09:07] 2025-11-24 19:08:34,444 | INFO     | mean y: 2878677.5659793816
[2025-11-24 14:09:07] 2025-11-24 19:08:34,444 | INFO     | intersect: -11644930938.472864
[2025-11-24 14:09:07] 2025-11-24 19:08:34,445 | INFO     | chi2: 1.9828947856364363
[2025-11-24 14:09:07] 2025-11-24 19:08:34,445 | INFO     | current chi2=1.9828947856364363 (change=15.018921192408438 %)
[2025-11-24 14:09:07] 2025-11-24 19:08:34,445 | INFO     | right removable region: 969
[2025-11-24 14:09:07] 2025-11-24 19:08:34,445 | INFO     | sum of square deviations: 291849511634.256
[2025-11-24 14:09:07] 2025-11-24 19:08:34,466 | INFO     | sum of deviations: 1121896518631.4148
[2025-11-24 14:09:07] 2025-11-24 19:08:34,466 | INFO     | mean x: 1763981412.227551
[2025-11-24 14:09:07] 2025-11-24 19:08:34,466 | INFO     | mean y: 2868173.4734693877
[2025-11-24 14:09:07] 2025-11-24 19:08:34,466 | INFO     | intersect: -6778039542.379393
[2025-11-24 14:09:07] 2025-11-24 19:08:34,467 | INFO     | chi2: 3.9218567915191986
[2025-11-24 14:09:07] 2025-11-24 19:08:34,467 | INFO     | current chi2=3.9218567915191986 (change=30.58283625862263 %)
[2025-11-24 14:09:07] 2025-11-24 19:08:34,468 | INFO     | sum of square deviations: 287405226581.4303
[2025-11-24 14:09:07] 2025-11-24 19:08:34,483 | INFO     | sum of deviations: 1062507166226.079
[2025-11-24 14:09:07] 2025-11-24 19:08:34,483 | INFO     | mean x: 1763981564.7271795
[2025-11-24 14:09:07] 2025-11-24 19:08:34,483 | INFO     | mean y: 2870210.868717949
[2025-11-24 14:09:07] 2025-11-24 19:08:34,484 | INFO     | intersect: -6518385772.9096155
[2025-11-24 14:09:07] 2025-11-24 19:08:34,484 | INFO     | chi2: 3.875254064838128
[2025-11-24 14:09:07] 2025-11-24 19:08:34,484 | INFO     | current chi2=3.875254064838128 (change=1.1882822132069257 %)
[2025-11-24 14:09:07] 2025-11-24 19:08:34,484 | INFO     | left removable region: 20
[2025-11-24 14:09:07] 2025-11-24 19:08:34,485 | INFO     | sum of square deviations: 265021347941.19104
[2025-11-24 14:09:07] 2025-11-24 19:08:34,510 | INFO     | sum of deviations: 1520404923681.6274
[2025-11-24 14:09:07] 2025-11-24 19:08:34,510 | INFO     | mean x: 1763981381.7386723
[2025-11-24 14:09:07] 2025-11-24 19:08:34,510 | INFO     | mean y: 2891850.244467861
[2025-11-24 14:09:07] 2025-11-24 19:08:34,510 | INFO     | intersect: -10116919247.665024
[2025-11-24 14:09:07] 2025-11-24 19:08:34,512 | INFO     | chi2: 0.14804075080563994
[2025-11-24 14:09:07] 2025-11-24 19:08:34,512 | INFO     | current memory leak: 5.74 B/s (using 949 data points, chi2=0.15)
[2025-11-24 14:09:07] 2025-11-24 19:08:34,513 | INFO     | could have reported an average CPU frequency of 2999 MHz (36 samples)
[2025-11-24 14:09:07] 2025-11-24 19:08:34,513 | INFO     | ..............................
[2025-11-24 14:09:07] 2025-11-24 19:08:34,513 | INFO     | . Timing measurements:
[2025-11-24 14:09:07] 2025-11-24 19:08:34,514 | INFO     | . get job = 0 s
[2025-11-24 14:09:07] 2025-11-24 19:08:34,514 | INFO     | . initial setup = 2 s
[2025-11-24 14:09:07] 2025-11-24 19:08:34,514 | INFO     | . payload setup = 5 s
[2025-11-24 14:09:07] 2025-11-24 19:08:34,514 | INFO     | . stage-in = 0 s
[2025-11-24 14:09:07] 2025-11-24 19:08:34,514 | INFO     | . payload execution = 60057 s
[2025-11-24 14:09:07] 2025-11-24 19:08:34,514 | INFO     | . stage-out = 4 s
[2025-11-24 14:09:07] 2025-11-24 19:08:34,514 | INFO     | . log creation = 0 s
[2025-11-24 14:09:07] 2025-11-24 19:08:34,515 | INFO     | ..............................
[2025-11-24 14:09:07] 2025-11-24 19:08:34,585 | INFO     | 
[2025-11-24 14:09:07] 2025-11-24 19:08:34,585 | INFO     | job summary report
[2025-11-24 14:09:07] 2025-11-24 19:08:34,585 | INFO     | --------------------------------------------------
[2025-11-24 14:09:07] 2025-11-24 19:08:34,585 | INFO     | PanDA job id: 6895355321
[2025-11-24 14:09:07] 2025-11-24 19:08:34,585 | INFO     | task id: 47556149
[2025-11-24 14:09:07] 2025-11-24 19:08:34,585 | INFO     | errors: (none)
[2025-11-24 14:09:07] 2025-11-24 19:08:34,585 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 14:09:07] 2025-11-24 19:08:34,585 | INFO     | pilot state: finished 
[2025-11-24 14:09:07] 2025-11-24 19:08:34,585 | INFO     | transexitcode: 0
[2025-11-24 14:09:07] 2025-11-24 19:08:34,586 | INFO     | exeerrorcode: 0
[2025-11-24 14:09:07] 2025-11-24 19:08:34,586 | INFO     | exeerrordiag: 
[2025-11-24 14:09:07] 2025-11-24 19:08:34,586 | INFO     | exitcode: 0
[2025-11-24 14:09:07] 2025-11-24 19:08:34,586 | INFO     | exitmsg: OK
[2025-11-24 14:09:07] 2025-11-24 19:08:34,586 | INFO     | cpuconsumptiontime: 461240 s
[2025-11-24 14:09:07] 2025-11-24 19:08:34,586 | INFO     | nevents: 1000
[2025-11-24 14:09:07] 2025-11-24 19:08:34,586 | INFO     | neventsw: 0
[2025-11-24 14:09:07] 2025-11-24 19:08:34,586 | INFO     | pid: 12736
[2025-11-24 14:09:07] 2025-11-24 19:08:34,586 | INFO     | pgrp: 12736
[2025-11-24 14:09:07] 2025-11-24 19:08:34,586 | INFO     | corecount: 8
[2025-11-24 14:09:07] 2025-11-24 19:08:34,586 | INFO     | event service: False
[2025-11-24 14:09:07] 2025-11-24 19:08:34,586 | INFO     | sizes: {0: 2298584, 1: 2298783, 5: 2299045, 12: 2299101, 60066: 2351380, 60067: 2351379, 60072: 2361348, 60073: 2361404, 60078: 2361650}
[2025-11-24 14:09:07] 2025-11-24 19:08:34,586 | INFO     | --------------------------------------------------
[2025-11-24 14:09:07] 2025-11-24 19:08:34,587 | INFO     | 
[2025-11-24 14:09:07] 2025-11-24 19:08:34,587 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-24 14:09:07] 2025-11-24 19:08:34,604 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 14:09:07] 2025-11-24 19:08:34,604 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 14:09:07] 2025-11-24 19:08:34,604 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 14:09:07] 2025-11-24 19:08:34,604 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 14:09:07] 2025-11-24 19:08:34,605 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 14:09:07] 2025-11-24 19:08:34,605 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 14:09:07] 2025-11-24 19:08:34,605 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 14:09:07] 2025-11-24 19:08:34,605 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 14:09:07] 2025-11-24 19:08:34,605 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 14:09:07] 2025-11-24 19:08:34,605 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 14:09:07] 2025-11-24 19:08:34,605 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 14:09:07] 2025-11-24 19:08:34,605 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 14:09:07] 2025-11-24 19:08:34,605 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 14:09:07] 2025-11-24 19:08:34,605 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 14:09:07] 2025-11-24 19:08:34,605 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 14:09:07] 2025-11-24 19:08:34,606 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 14:09:07] 2025-11-24 19:08:34,606 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 14:09:07] 2025-11-24 19:08:34,606 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 14:09:07] 2025-11-24 19:08:34,606 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 14:09:07] 2025-11-24 19:08:34,606 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 14:09:07] 2025-11-24 19:08:34,606 | INFO     | job 6895355321 has completed (purged errors)
[2025-11-24 14:09:07] 2025-11-24 19:08:34,606 | INFO     | overall cleanup function is called
[2025-11-24 14:09:07] 2025-11-24 19:08:35,619 | INFO     | --- collectZombieJob: --- 10, [12736]
[2025-11-24 14:09:07] 2025-11-24 19:08:35,619 | INFO     | zombie collector waiting for pid 12736
[2025-11-24 14:09:07] 2025-11-24 19:08:35,619 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 14:09:07] 2025-11-24 19:08:35,620 | INFO     | collected zombie processes
[2025-11-24 14:09:07] 2025-11-24 19:08:35,620 | INFO     | will attempt to kill all subprocesses of pid=12736
[2025-11-24 14:09:07] 2025-11-24 19:08:35,897 | INFO     | process IDs to be killed: [12736] (in reverse order)
[2025-11-24 14:09:07] 2025-11-24 19:08:35,960 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 14:09:07] 2025-11-24 19:08:35,960 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 14:09:07] 2025-11-24 19:08:35,966 | INFO     | did not find any defunct processes belonging to 12736
[2025-11-24 14:09:07] 2025-11-24 19:08:35,970 | INFO     | did not find any defunct processes belonging to 12736
[2025-11-24 14:09:07] 2025-11-24 19:08:35,971 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 14:09:07] 2025-11-24 19:08:35,971 | INFO     | ready for new job
[2025-11-24 14:09:07] 2025-11-24 19:08:35,972 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 14:09:07] 2025-11-24 19:08:35,975 | INFO     | ***************************************
[2025-11-24 14:09:07] 2025-11-24 19:08:35,975 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 14:09:07] 2025-11-24 19:08:35,975 | INFO     | ***************************************
[2025-11-24 14:09:07] 2025-11-24 19:08:35,975 | INFO     | 
[2025-11-24 14:09:07] 2025-11-24 19:08:35,976 | INFO     | architecture information:
[2025-11-24 14:09:07] 2025-11-24 19:08:35,977 | INFO     | executing command: cat /etc/os-release
[2025-11-24 14:09:07] 2025-11-24 19:08:36,001 | INFO     | cat /etc/os-release:
[2025-11-24 14:09:07] NAME="CentOS Linux"
[2025-11-24 14:09:07] VERSION="7 (Core)"
[2025-11-24 14:09:07] ID="centos"
[2025-11-24 14:09:07] ID_LIKE="rhel fedora"
[2025-11-24 14:09:07] VERSION_ID="7"
[2025-11-24 14:09:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 14:09:07] ANSI_COLOR="0;31"
[2025-11-24 14:09:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 14:09:07] HOME_URL="https://www.centos.org/"
[2025-11-24 14:09:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 14:09:07] 
[2025-11-24 14:09:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 14:09:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 14:09:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 14:09:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 14:09:07] 
[2025-11-24 14:09:07] 2025-11-24 19:08:36,001 | INFO     | ***************************************
[2025-11-24 14:09:07] 2025-11-24 19:08:36,505 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-24 14:09:07] 2025-11-24 19:08:36,519 | INFO     | sufficient remaining disk space (100538515456 B)
[2025-11-24 14:09:07] 2025-11-24 19:08:36,520 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 14:09:07] 2025-11-24 19:08:36,520 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 14:09:07] 2025-11-24 19:08:36,520 | INFO     | update_server=False
[2025-11-24 14:09:07] 2025-11-24 19:08:36,520 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 14:09:07] 2025-11-24 19:08:36,521 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 14:09:07] 2025-11-24 19:08:36,525 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 14:09:07] 2025-11-24 19:08:36,521 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 14:09:07] 2025-11-24 19:08:36,652 | INFO     | all payload control threads have been joined
[2025-11-24 14:09:07] 2025-11-24 19:08:36,855 | INFO     | all job control threads have been joined
[2025-11-24 14:09:07] 2025-11-24 19:08:37,136 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 14:09:07] 2025-11-24 19:08:37,136 | INFO     | aborting loop
[2025-11-24 14:09:07] 2025-11-24 19:08:37,141 | INFO     | all data control threads have been joined
[2025-11-24 14:09:07] 2025-11-24 19:08:37,526 | INFO     | [job] retrieve thread has finished
[2025-11-24 14:09:07] 2025-11-24 19:08:37,530 | INFO     | [job] queue monitor thread has finished
[2025-11-24 14:09:07] 2025-11-24 19:08:37,658 | INFO     | [payload] control thread has finished
[2025-11-24 14:09:07] 2025-11-24 19:08:37,728 | INFO     | [payload] failed_post thread has finished
[2025-11-24 14:09:07] 2025-11-24 19:08:37,860 | INFO     | [job] control thread has finished
[2025-11-24 14:09:07] 2025-11-24 19:08:37,913 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 14:09:07] 2025-11-24 19:08:37,921 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 14:09:07] 2025-11-24 19:08:38,000 | INFO     | [job] validate thread has finished
[2025-11-24 14:09:07] 2025-11-24 19:08:38,141 | INFO     | [job] job monitor thread has finished
[2025-11-24 14:09:07] 2025-11-24 19:08:38,147 | INFO     | [data] control thread has finished
[2025-11-24 14:09:07] 2025-11-24 19:08:38,410 | INFO     | [payload] validate_post thread has finished
[2025-11-24 14:09:07] 2025-11-24 19:08:38,431 | INFO     | [data] copytool_in thread has finished
[2025-11-24 14:09:07] 2025-11-24 19:08:38,441 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 14:09:07] 2025-11-24 19:08:38,527 | INFO     | [data] copytool_out thread has finished
[2025-11-24 14:09:07] 2025-11-24 19:08:40,451 | INFO     | [monitor] cgroup control has ended
[2025-11-24 14:09:07] 2025-11-24 19:08:40,535 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 14:09:07] 2025-11-24 19:08:47,261 | INFO     | job.realtimelogging is not enabled
[2025-11-24 14:09:07] 2025-11-24 19:08:48,267 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 14:09:07] 2025-11-24 19:08:49,793 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139916684244800)>', '<ExcThread(monitor, started 139916243613440)>']
[2025-11-24 14:09:07] 2025-11-24 19:08:54,819 | INFO     | all workflow threads have been joined
[2025-11-24 14:09:07] 2025-11-24 19:08:54,819 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 14:09:07] 2025-11-24 19:08:54,819 | INFO     | traces error code: 0
[2025-11-24 14:09:07] 2025-11-24 19:08:54,820 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 14:09:07] 2025-11-24 19:09:07,261 | INFO     | PID=6104 has CPU usage=8.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-24 14:09:07] 2025-11-24 19:09:07,261 | INFO     | .. there are 4 such processes running
[2025-11-24 14:09:07] 2025-11-24 19:09:07,262 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 14:09:07] 2025-11-24 19:09:07,262 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 14:09:07] 2025-11-24 19:09:07,262 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 14:09:07] 2025-11-24 19:09:07,263 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 14:09:07] 2025-11-24 19:09:07,263 | INFO     | [monitor] control thread has ended
[2025-11-24 14:09:07] 2025-11-24 19:09:07,360 [wrapper] ==== pilot stdout END ====
[2025-11-24 14:09:07] 2025-11-24 19:09:07,363 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 14:09:07] 2025-11-24 19:09:07,365 [wrapper] pilotpid: 6104
[2025-11-24 14:09:07] 2025-11-24 19:09:07,367 [wrapper] Pilot exit status: 0
[2025-11-24 14:09:07] 2025-11-24 19:09:07,387 [wrapper] pandaids: 6895355321
[2025-11-24 14:09:07] 2025-11-24 19:09:07,431 [wrapper] cleanup supervisor_pilot 29858 6105
[2025-11-24 14:09:07] 2025-11-24 19:09:07,433 [wrapper] Test setup, not cleaning
[2025-11-24 14:09:07] 2025-11-24 19:09:07,436 [wrapper] apfmon messages muted
[2025-11-24 14:09:07] 2025-11-24 19:09:07,438 [wrapper] ==== wrapper stdout END ====
[2025-11-24 14:09:07] 2025-11-24 19:09:07,440 [wrapper] ==== wrapper stderr END ====
[2025-11-24 14:09:07]  *** Error codes and diagnostics ***
[2025-11-24 14:09:07]     "exeErrorCode": 0,
[2025-11-24 14:09:07]     "exeErrorDiag": "",
[2025-11-24 14:09:07]     "pilotErrorCode": 0,
[2025-11-24 14:09:07]     "pilotErrorDiag": "",
[2025-11-24 14:09:07]  *** Listing of results directory ***
[2025-11-24 14:09:07] total 1301844
[2025-11-24 14:09:07] -rw-r--r-- 1 boincer umatlas    576529 Nov 23 01:48 pilot3.tar.gz
[2025-11-24 14:09:07] -rw-r--r-- 1 boincer umatlas      5112 Nov 23 02:09 queuedata.json
[2025-11-24 14:09:07] -rwx------ 1 boincer umatlas     36292 Nov 23 02:09 runpilot2-wrapper.sh
[2025-11-24 14:09:07] -rw-r--r-- 1 boincer umatlas       100 Nov 23 21:26 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 14:09:07] -rwxr-xr-x 1 boincer umatlas      7986 Nov 23 21:26 run_atlas
[2025-11-24 14:09:07] -rw-r--r-- 1 boincer umatlas       105 Nov 23 21:26 job.xml
[2025-11-24 14:09:07] -rw-r--r-- 2 boincer umatlas 407565756 Nov 23 21:26 EVNT.47483658._001146.pool.root.1
[2025-11-24 14:09:07] -rw-r--r-- 2 boincer umatlas     15847 Nov 23 21:26 start_atlas.sh
[2025-11-24 14:09:07] drwxrwx--x 2 boincer umatlas      4096 Nov 23 21:26 shared
[2025-11-24 14:09:07] -rw-r--r-- 2 boincer umatlas    590106 Nov 23 21:26 input.tar.gz
[2025-11-24 14:09:07] -rw-r--r-- 1 boincer umatlas         0 Nov 23 21:26 boinc_lockfile
[2025-11-24 14:09:07] -rw-r--r-- 1 boincer umatlas      2784 Nov 23 21:26 pandaJob.out
[2025-11-24 14:09:07] -rw------- 1 boincer umatlas        57 Nov 23 21:26 setup.sh.local
[2025-11-24 14:09:07] -rw------- 1 boincer umatlas    989786 Nov 23 21:26 agis_schedconf.cvmfs.json
[2025-11-24 14:09:07] drwx------ 5 boincer umatlas      4096 Nov 23 21:27 pilot3
[2025-11-24 14:09:07] -rw-r--r-- 1 boincer umatlas       533 Nov 24 13:51 boinc_task_state.xml
[2025-11-24 14:09:07] -rw-r--r-- 1 boincer umatlas      6038 Nov 24 14:00 init_data.xml
[2025-11-24 14:09:07] -rw------- 1 boincer umatlas 900863948 Nov 24 14:07 HITS.47556149._001329.pool.root.1
[2025-11-24 14:09:07] -rw------- 1 boincer umatlas      1064 Nov 24 14:08 memory_monitor_summary.json
[2025-11-24 14:09:07] -rw------- 1 boincer umatlas   1516227 Nov 24 14:08 agis_ddmendpoints.agis.ALL.json
[2025-11-24 14:09:07] -rw------- 1 boincer umatlas   2180573 Nov 24 14:08 log.47556149._001329.job.log.tgz.1
[2025-11-24 14:09:07] -rw------- 1 boincer umatlas      8650 Nov 24 14:08 heartbeat.json
[2025-11-24 14:09:07] -rw-r--r-- 1 boincer umatlas      8192 Nov 24 14:08 boinc_mmap_file
[2025-11-24 14:09:07] -rw-r--r-- 1 boincer umatlas        29 Nov 24 14:08 wrapper_checkpoint.txt
[2025-11-24 14:09:07] -rw------- 1 boincer umatlas        95 Nov 24 14:09 pilot_heartbeat.json
[2025-11-24 14:09:07] -rw------- 1 boincer umatlas       819 Nov 24 14:09 pilotlog.txt
[2025-11-24 14:09:07] -rw------- 1 boincer umatlas   8191806 Nov 24 14:09 log.47556149._001329.job.log.1
[2025-11-24 14:09:07] -rw------- 1 boincer umatlas       353 Nov 24 14:09 output.list
[2025-11-24 14:09:07] -rw-r--r-- 1 boincer umatlas       620 Nov 24 14:09 runtime_log
[2025-11-24 14:09:07] -rw------- 1 boincer umatlas  10393600 Nov 24 14:09 result.tar.gz
[2025-11-24 14:09:07] -rw-r--r-- 1 boincer umatlas      9333 Nov 24 14:09 runtime_log.err
[2025-11-24 14:09:07] -rw------- 1 boincer umatlas       665 Nov 24 14:09 CgQNDmYPJh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmUiKKDmFkOhKm.diag
[2025-11-24 14:09:07] -rw-r--r-- 1 boincer umatlas     21103 Nov 24 14:09 stderr.txt
[2025-11-24 14:09:07] HITS file was successfully produced:
[2025-11-24 14:09:07] -rw------- 1 boincer umatlas 900863948 Nov 24 14:07 shared/HITS.pool.root.1
[2025-11-24 14:09:07]  *** Contents of shared directory: ***
[2025-11-24 14:09:07] total 1288520
[2025-11-24 14:09:07] -rw-r--r-- 2 boincer umatlas 407565756 Nov 23 21:26 ATLAS.root_0
[2025-11-24 14:09:07] -rw-r--r-- 2 boincer umatlas     15847 Nov 23 21:26 start_atlas.sh
[2025-11-24 14:09:07] -rw-r--r-- 2 boincer umatlas    590106 Nov 23 21:26 input.tar.gz
[2025-11-24 14:09:07] -rw------- 1 boincer umatlas 900863948 Nov 24 14:07 HITS.pool.root.1
[2025-11-24 14:09:07] -rw------- 1 boincer umatlas  10393600 Nov 24 14:09 result.tar.gz
14:09:08 (1606): run_atlas exited; CPU time 461616.908983
14:09:08 (1606): called boinc_finish(0)

</stderr_txt>
]]>

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