Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
21:01:51 (14658): wrapper (7.7.26015): starting
21:01:51 (14658): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 21:01:51] Arguments: --nthreads 8
[2025-11-23 21:01:51] Threads: 8
[2025-11-23 21:01:51] Checking for CVMFS
[2025-11-23 21:01:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 21:01:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 21:01:51] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 21:01:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 21:01:51] 2.11.2.0 2918 138979 89420 153228 3 82 13643369 20275200 1 130560 0 52078674 99.934 6354544 35048 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-23 21:01:51] CVMFS is ok
[2025-11-23 21:01:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 21:01:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 21:01:51] Further information can be found at the LHC@home message board.
[2025-11-23 21:01:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 21:01:51] Checking for apptainer binary...
[2025-11-23 21:01:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 21:01:51] Running /usr/bin/apptainer --version
[2025-11-23 21:01:51] apptainer version 1.3.2-1.el7
[2025-11-23 21:01:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 21:01:53] c-115-8.aglt2.org
[2025-11-23 21:01:53] apptainer works
[2025-11-23 21:01:53] Set ATHENA_PROC_NUMBER=8
[2025-11-23 21:01:53] Set ATHENA_CORE_NUMBER=8
[2025-11-23 21:01:53] Starting ATLAS job with PandaID=6895365189
[2025-11-23 21:01:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 08:09:22]  *** The last 200 lines of the pilot log: ***
[2025-11-24 08:09:22] 2025-11-24 13:08:27,942 | INFO     | PID=18419 has CPU usage=11.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-24 08:09:22] 2025-11-24 13:08:28,504 | INFO     | monitor loop #2948: job 0:6895365189 is in state 'finished'
[2025-11-24 08:09:22] 2025-11-24 13:08:28,504 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 08:09:22] 2025-11-24 13:08:28,942 | INFO     | time since job start (39978s) is within the limit (172800.0s)
[2025-11-24 08:09:22] 2025-11-24 13:08:29,179 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-24 08:09:22] 2025-11-24 13:08:29,182 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1745.75
[2025-11-24 08:09:22] 2025-11-24 13:08:29,183 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895365189/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 08:09:22] 2025-11-24 13:08:29,184 | INFO     | extracted standard info from prmon json
[2025-11-24 08:09:22] 2025-11-24 13:08:29,184 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 08:09:22] 2025-11-24 13:08:29,184 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 08:09:22] 2025-11-24 13:08:29,195 | INFO     | fitting pss+swap vs Time
[2025-11-24 08:09:22] 2025-11-24 13:08:29,196 | INFO     | sum of square deviations: 87136681989.50223
[2025-11-24 08:09:22] 2025-11-24 13:08:29,206 | INFO     | sum of deviations: 649057676845.7986
[2025-11-24 08:09:22] 2025-11-24 13:08:29,206 | INFO     | mean x: 1763969709.6122139
[2025-11-24 08:09:22] 2025-11-24 13:08:29,207 | INFO     | mean y: 3182936.1251908396
[2025-11-24 08:09:22] 2025-11-24 13:08:29,207 | INFO     | intersect: -13136152365.684847
[2025-11-24 08:09:22] 2025-11-24 13:08:29,207 | INFO     | chi2: 6.083959525799418
[2025-11-24 08:09:22] 2025-11-24 13:08:29,208 | INFO     | sum of square deviations: 85156497395.11398
[2025-11-24 08:09:22] 2025-11-24 13:08:29,218 | INFO     | sum of deviations: 881476063033.0952
[2025-11-24 08:09:22] 2025-11-24 13:08:29,218 | INFO     | mean x: 1763969557.116923
[2025-11-24 08:09:22] 2025-11-24 13:08:29,218 | INFO     | mean y: 3200828.8276923075
[2025-11-24 08:09:22] 2025-11-24 13:08:29,219 | INFO     | intersect: -18256086343.390747
[2025-11-24 08:09:22] 2025-11-24 13:08:29,219 | INFO     | chi2: 3.129047924412093
[2025-11-24 08:09:22] 2025-11-24 13:08:29,220 | INFO     | current chi2=3.129047924412093 (change=48.56888986287358 %)
[2025-11-24 08:09:22] 2025-11-24 13:08:29,221 | INFO     | sum of square deviations: 83206545925.6963
[2025-11-24 08:09:22] 2025-11-24 13:08:29,231 | INFO     | sum of deviations: 969182794707.2283
[2025-11-24 08:09:22] 2025-11-24 13:08:29,231 | INFO     | mean x: 1763969404.6217055
[2025-11-24 08:09:22] 2025-11-24 13:08:29,231 | INFO     | mean y: 3207677.8124031005
[2025-11-24 08:09:22] 2025-11-24 13:08:29,231 | INFO     | intersect: -20543358440.627316
[2025-11-24 08:09:22] 2025-11-24 13:08:29,232 | INFO     | chi2: 2.573248530113245
[2025-11-24 08:09:22] 2025-11-24 13:08:29,232 | INFO     | current chi2=2.573248530113245 (change=17.762572121782878 %)
[2025-11-24 08:09:22] 2025-11-24 13:08:29,232 | INFO     | right removable region: 644
[2025-11-24 08:09:22] 2025-11-24 13:08:29,233 | INFO     | sum of square deviations: 85156252785.11401
[2025-11-24 08:09:22] 2025-11-24 13:08:29,243 | INFO     | sum of deviations: 445658501152.21234
[2025-11-24 08:09:22] 2025-11-24 13:08:29,243 | INFO     | mean x: 1763969862.116923
[2025-11-24 08:09:22] 2025-11-24 13:08:29,244 | INFO     | mean y: 3198568.826153846
[2025-11-24 08:09:22] 2025-11-24 13:08:29,244 | INFO     | intersect: -9228397927.234367
[2025-11-24 08:09:22] 2025-11-24 13:08:29,244 | INFO     | chi2: 3.678907981990598
[2025-11-24 08:09:22] 2025-11-24 13:08:29,245 | INFO     | current chi2=3.678907981990598 (change=39.5310247152376 %)
[2025-11-24 08:09:22] 2025-11-24 13:08:29,245 | INFO     | sum of square deviations: 83206096355.93799
[2025-11-24 08:09:22] 2025-11-24 13:08:29,255 | INFO     | sum of deviations: 410404626721.767
[2025-11-24 08:09:22] 2025-11-24 13:08:29,255 | INFO     | mean x: 1763970014.620155
[2025-11-24 08:09:22] 2025-11-24 13:08:29,255 | INFO     | mean y: 3201323.3255813955
[2025-11-24 08:09:22] 2025-11-24 13:08:29,255 | INFO     | intersect: -8697380570.35811
[2025-11-24 08:09:22] 2025-11-24 13:08:29,256 | INFO     | chi2: 3.650620884614278
[2025-11-24 08:09:22] 2025-11-24 13:08:29,256 | INFO     | current chi2=3.650620884614278 (change=0.7688992906263009 %)
[2025-11-24 08:09:22] 2025-11-24 13:08:29,256 | INFO     | left removable region: 20
[2025-11-24 08:09:22] 2025-11-24 13:08:29,257 | INFO     | sum of square deviations: 75340901223.95917
[2025-11-24 08:09:22] 2025-11-24 13:08:29,266 | INFO     | sum of deviations: 676189068313.0692
[2025-11-24 08:09:22] 2025-11-24 13:08:29,266 | INFO     | mean x: 1763969984.1330128
[2025-11-24 08:09:22] 2025-11-24 13:08:29,266 | INFO     | mean y: 3231439.0112179485
[2025-11-24 08:09:22] 2025-11-24 13:08:29,266 | INFO     | intersect: -15828504055.596937
[2025-11-24 08:09:22] 2025-11-24 13:08:29,267 | INFO     | chi2: 0.08600097954367146
[2025-11-24 08:09:22] 2025-11-24 13:08:29,267 | INFO     | current memory leak: 8.98 B/s (using 624 data points, chi2=0.09)
[2025-11-24 08:09:22] 2025-11-24 13:08:29,268 | INFO     | could have reported an average CPU frequency of 2374 MHz (25 samples)
[2025-11-24 08:09:22] 2025-11-24 13:08:29,268 | INFO     | ..............................
[2025-11-24 08:09:22] 2025-11-24 13:08:29,268 | INFO     | . Timing measurements:
[2025-11-24 08:09:22] 2025-11-24 13:08:29,268 | INFO     | . get job = 0 s
[2025-11-24 08:09:22] 2025-11-24 13:08:29,268 | INFO     | . initial setup = 2 s
[2025-11-24 08:09:22] 2025-11-24 13:08:29,268 | INFO     | . payload setup = 9 s
[2025-11-24 08:09:22] 2025-11-24 13:08:29,269 | INFO     | . stage-in = 0 s
[2025-11-24 08:09:22] 2025-11-24 13:08:29,269 | INFO     | . payload execution = 39936 s
[2025-11-24 08:09:22] 2025-11-24 13:08:29,269 | INFO     | . stage-out = 3 s
[2025-11-24 08:09:22] 2025-11-24 13:08:29,269 | INFO     | . log creation = 0 s
[2025-11-24 08:09:22] 2025-11-24 13:08:29,269 | INFO     | ..............................
[2025-11-24 08:09:22] 2025-11-24 13:08:29,681 | INFO     | 
[2025-11-24 08:09:22] 2025-11-24 13:08:29,681 | INFO     | job summary report
[2025-11-24 08:09:22] 2025-11-24 13:08:29,681 | INFO     | --------------------------------------------------
[2025-11-24 08:09:22] 2025-11-24 13:08:29,682 | INFO     | PanDA job id: 6895365189
[2025-11-24 08:09:22] 2025-11-24 13:08:29,682 | INFO     | task id: 47556137
[2025-11-24 08:09:22] 2025-11-24 13:08:29,682 | INFO     | errors: (none)
[2025-11-24 08:09:22] 2025-11-24 13:08:29,682 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 08:09:22] 2025-11-24 13:08:29,682 | INFO     | pilot state: finished 
[2025-11-24 08:09:22] 2025-11-24 13:08:29,683 | INFO     | transexitcode: 0
[2025-11-24 08:09:22] 2025-11-24 13:08:29,683 | INFO     | exeerrorcode: 0
[2025-11-24 08:09:22] 2025-11-24 13:08:29,683 | INFO     | exeerrordiag: 
[2025-11-24 08:09:22] 2025-11-24 13:08:29,683 | INFO     | exitcode: 0
[2025-11-24 08:09:22] 2025-11-24 13:08:29,683 | INFO     | exitmsg: OK
[2025-11-24 08:09:22] 2025-11-24 13:08:29,683 | INFO     | cpuconsumptiontime: 309972 s
[2025-11-24 08:09:22] 2025-11-24 13:08:29,684 | INFO     | nevents: 1000
[2025-11-24 08:09:22] 2025-11-24 13:08:29,684 | INFO     | neventsw: 0
[2025-11-24 08:09:22] 2025-11-24 13:08:29,684 | INFO     | pid: 24880
[2025-11-24 08:09:22] 2025-11-24 13:08:29,684 | INFO     | pgrp: 24880
[2025-11-24 08:09:22] 2025-11-24 13:08:29,684 | INFO     | corecount: 8
[2025-11-24 08:09:22] 2025-11-24 13:08:29,684 | INFO     | event service: False
[2025-11-24 08:09:22] 2025-11-24 13:08:29,685 | INFO     | sizes: {0: 2298636, 1: 2298835, 6: 2299097, 11: 2299125, 39949: 2342630, 39952: 2352415, 39956: 2352599, 39961: 2352909}
[2025-11-24 08:09:22] 2025-11-24 13:08:29,685 | INFO     | --------------------------------------------------
[2025-11-24 08:09:22] 2025-11-24 13:08:29,685 | INFO     | 
[2025-11-24 08:09:22] 2025-11-24 13:08:29,685 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-24 08:09:22] 2025-11-24 13:08:29,717 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 08:09:22] 2025-11-24 13:08:29,718 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 08:09:22] 2025-11-24 13:08:29,718 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 08:09:22] 2025-11-24 13:08:29,718 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 08:09:22] 2025-11-24 13:08:29,718 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 08:09:22] 2025-11-24 13:08:29,718 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 08:09:22] 2025-11-24 13:08:29,719 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 08:09:22] 2025-11-24 13:08:29,719 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 08:09:22] 2025-11-24 13:08:29,719 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 08:09:22] 2025-11-24 13:08:29,719 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 08:09:22] 2025-11-24 13:08:29,719 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 08:09:22] 2025-11-24 13:08:29,720 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 08:09:22] 2025-11-24 13:08:29,720 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 08:09:22] 2025-11-24 13:08:29,720 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 08:09:22] 2025-11-24 13:08:29,720 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 08:09:22] 2025-11-24 13:08:29,720 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 08:09:22] 2025-11-24 13:08:29,721 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 08:09:22] 2025-11-24 13:08:29,721 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 08:09:22] 2025-11-24 13:08:29,721 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 08:09:22] 2025-11-24 13:08:29,721 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 08:09:22] 2025-11-24 13:08:29,721 | INFO     | job 6895365189 has completed (purged errors)
[2025-11-24 08:09:22] 2025-11-24 13:08:29,722 | INFO     | overall cleanup function is called
[2025-11-24 08:09:22] 2025-11-24 13:08:30,732 | INFO     | --- collectZombieJob: --- 10, [24880]
[2025-11-24 08:09:22] 2025-11-24 13:08:30,733 | INFO     | zombie collector waiting for pid 24880
[2025-11-24 08:09:22] 2025-11-24 13:08:30,733 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 08:09:22] 2025-11-24 13:08:30,733 | INFO     | collected zombie processes
[2025-11-24 08:09:22] 2025-11-24 13:08:30,733 | INFO     | will attempt to kill all subprocesses of pid=24880
[2025-11-24 08:09:22] 2025-11-24 13:08:30,819 | INFO     | process IDs to be killed: [24880] (in reverse order)
[2025-11-24 08:09:22] 2025-11-24 13:08:30,880 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 08:09:22] 2025-11-24 13:08:30,881 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 08:09:22] 2025-11-24 13:08:30,885 | INFO     | did not find any defunct processes belonging to 24880
[2025-11-24 08:09:22] 2025-11-24 13:08:30,888 | INFO     | did not find any defunct processes belonging to 24880
[2025-11-24 08:09:22] 2025-11-24 13:08:30,891 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 08:09:22] 2025-11-24 13:08:30,892 | INFO     | ready for new job
[2025-11-24 08:09:22] 2025-11-24 13:08:30,892 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 08:09:22] 2025-11-24 13:08:30,895 | INFO     | ***************************************
[2025-11-24 08:09:22] 2025-11-24 13:08:30,895 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 08:09:22] 2025-11-24 13:08:30,895 | INFO     | ***************************************
[2025-11-24 08:09:22] 2025-11-24 13:08:30,895 | INFO     | 
[2025-11-24 08:09:22] 2025-11-24 13:08:30,896 | INFO     | architecture information:
[2025-11-24 08:09:22] 2025-11-24 13:08:30,896 | INFO     | executing command: cat /etc/os-release
[2025-11-24 08:09:22] 2025-11-24 13:08:30,916 | INFO     | cat /etc/os-release:
[2025-11-24 08:09:22] NAME="CentOS Linux"
[2025-11-24 08:09:22] VERSION="7 (Core)"
[2025-11-24 08:09:22] ID="centos"
[2025-11-24 08:09:22] ID_LIKE="rhel fedora"
[2025-11-24 08:09:22] VERSION_ID="7"
[2025-11-24 08:09:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 08:09:22] ANSI_COLOR="0;31"
[2025-11-24 08:09:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 08:09:22] HOME_URL="https://www.centos.org/"
[2025-11-24 08:09:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 08:09:22] 
[2025-11-24 08:09:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 08:09:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 08:09:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 08:09:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 08:09:22] 
[2025-11-24 08:09:22] 2025-11-24 13:08:30,916 | INFO     | ***************************************
[2025-11-24 08:09:22] 2025-11-24 13:08:31,420 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-24 08:09:22] 2025-11-24 13:08:31,440 | INFO     | sufficient remaining disk space (17488150528 B)
[2025-11-24 08:09:22] 2025-11-24 13:08:31,441 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 08:09:22] 2025-11-24 13:08:31,441 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 08:09:22] 2025-11-24 13:08:31,441 | INFO     | update_server=False
[2025-11-24 08:09:22] 2025-11-24 13:08:31,441 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 08:09:22] 2025-11-24 13:08:31,442 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 08:09:22] 2025-11-24 13:08:32,012 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 08:09:22] 2025-11-24 13:08:32,013 | INFO     | aborting loop
[2025-11-24 08:09:22] 2025-11-24 13:08:32,051 | INFO     | all data control threads have been joined
[2025-11-24 08:09:22] 2025-11-24 13:08:32,329 | INFO     | all job control threads have been joined
[2025-11-24 08:09:22] 2025-11-24 13:08:32,445 | INFO     | [job] retrieve thread has finished
[2025-11-24 08:09:22] 2025-11-24 13:08:32,467 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 08:09:22] 2025-11-24 13:08:32,472 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 08:09:22] 2025-11-24 13:08:32,521 | INFO     | all payload control threads have been joined
[2025-11-24 08:09:22] 2025-11-24 13:08:32,771 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 08:09:22] 2025-11-24 13:08:33,018 | INFO     | [job] job monitor thread has finished
[2025-11-24 08:09:22] 2025-11-24 13:08:33,056 | INFO     | [data] control thread has finished
[2025-11-24 08:09:22] 2025-11-24 13:08:33,200 | INFO     | [payload] failed_post thread has finished
[2025-11-24 08:09:22] 2025-11-24 13:08:33,217 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 08:09:22] 2025-11-24 13:08:33,335 | INFO     | [job] control thread has finished
[2025-11-24 08:09:22] 2025-11-24 13:08:33,447 | INFO     | [data] copytool_out thread has finished
[2025-11-24 08:09:22] 2025-11-24 13:08:33,526 | INFO     | [payload] control thread has finished
[2025-11-24 08:09:22] 2025-11-24 13:08:33,542 | INFO     | [payload] validate_post thread has finished
[2025-11-24 08:09:22] 2025-11-24 13:08:33,569 | INFO     | [job] validate thread has finished
[2025-11-24 08:09:22] 2025-11-24 13:08:33,875 | INFO     | [data] copytool_in thread has finished
[2025-11-24 08:09:22] 2025-11-24 13:08:33,965 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 08:09:22] 2025-11-24 13:08:34,375 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 08:09:22] 2025-11-24 13:08:35,376 | INFO     | [job] queue monitor thread has finished
[2025-11-24 08:09:22] 2025-11-24 13:08:37,971 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 08:09:22] 2025-11-24 13:09:02,156 | INFO     | PID=18419 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-24 08:09:22] 2025-11-24 13:09:02,157 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 08:09:22] 2025-11-24 13:09:02,157 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 08:09:22] 2025-11-24 13:09:02,157 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 08:09:22] 2025-11-24 13:09:16,557 | INFO     | [monitor] cgroup control has ended
[2025-11-24 08:09:22] 2025-11-24 13:09:17,528 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139912231950144)>', '<ExcThread(monitor, started 139911571171072)>']
[2025-11-24 08:09:22] 2025-11-24 13:09:18,234 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 08:09:22] 2025-11-24 13:09:18,235 | INFO     | [monitor] control thread has ended
[2025-11-24 08:09:22] 2025-11-24 13:09:22,535 | INFO     | all workflow threads have been joined
[2025-11-24 08:09:22] 2025-11-24 13:09:22,535 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 08:09:22] 2025-11-24 13:09:22,535 | INFO     | traces error code: 0
[2025-11-24 08:09:22] 2025-11-24 13:09:22,536 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 08:09:22] 2025-11-24 13:09:22,640 [wrapper] ==== pilot stdout END ====
[2025-11-24 08:09:22] 2025-11-24 13:09:22,645 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 08:09:22] 2025-11-24 13:09:22,650 [wrapper] pilotpid: 18419
[2025-11-24 08:09:22] 2025-11-24 13:09:22,654 [wrapper] Pilot exit status: 0
[2025-11-24 08:09:22] 2025-11-24 13:09:22,671 [wrapper] pandaids: 6895365189
[2025-11-24 08:09:22] 2025-11-24 13:09:22,725 [wrapper] cleanup supervisor_pilot 25111 18420
[2025-11-24 08:09:22] 2025-11-24 13:09:22,730 [wrapper] Test setup, not cleaning
[2025-11-24 08:09:22] 2025-11-24 13:09:22,735 [wrapper] apfmon messages muted
[2025-11-24 08:09:22] 2025-11-24 13:09:22,739 [wrapper] ==== wrapper stdout END ====
[2025-11-24 08:09:22] 2025-11-24 13:09:22,744 [wrapper] ==== wrapper stderr END ====
[2025-11-24 08:09:22]  *** Error codes and diagnostics ***
[2025-11-24 08:09:22]     "exeErrorCode": 0,
[2025-11-24 08:09:22]     "exeErrorDiag": "",
[2025-11-24 08:09:22]     "pilotErrorCode": 0,
[2025-11-24 08:09:22]     "pilotErrorDiag": "",
[2025-11-24 08:09:22]  *** Listing of results directory ***
[2025-11-24 08:09:22] total 1302068
[2025-11-24 08:09:22] -rw-r--r-- 1 boincer umatlas    576529 Nov 23 11:55 pilot3.tar.gz
[2025-11-24 08:09:22] -rwx------ 1 boincer umatlas     36292 Nov 23 12:04 runpilot2-wrapper.sh
[2025-11-24 08:09:22] -rw-r--r-- 1 boincer umatlas      5112 Nov 23 12:04 queuedata.json
[2025-11-24 08:09:22] -rw-r--r-- 1 boincer umatlas       100 Nov 23 21:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 08:09:22] -rwxr-xr-x 1 boincer umatlas      7986 Nov 23 21:01 run_atlas
[2025-11-24 08:09:22] -rw-r--r-- 1 boincer umatlas       105 Nov 23 21:01 job.xml
[2025-11-24 08:09:22] -rw-r--r-- 2 boincer umatlas 406652188 Nov 23 21:01 EVNT.47483658._000817.pool.root.1
[2025-11-24 08:09:22] -rw-r--r-- 2 boincer umatlas     15847 Nov 23 21:01 start_atlas.sh
[2025-11-24 08:09:22] drwxrwx--x 2 boincer umatlas      4096 Nov 23 21:01 shared
[2025-11-24 08:09:22] -rw-r--r-- 2 boincer umatlas    590098 Nov 23 21:01 input.tar.gz
[2025-11-24 08:09:22] -rw-r--r-- 1 boincer umatlas         0 Nov 23 21:01 boinc_lockfile
[2025-11-24 08:09:22] -rw-r--r-- 1 boincer umatlas      2786 Nov 23 21:01 pandaJob.out
[2025-11-24 08:09:22] -rw------- 1 boincer umatlas        57 Nov 23 21:01 setup.sh.local
[2025-11-24 08:09:22] -rw------- 1 boincer umatlas    989786 Nov 23 21:02 agis_schedconf.cvmfs.json
[2025-11-24 08:09:22] drwx------ 5 boincer umatlas      4096 Nov 23 21:02 pilot3
[2025-11-24 08:09:22] -rw-r--r-- 1 boincer umatlas       533 Nov 24 07:57 boinc_task_state.xml
[2025-11-24 08:09:22] -rw-r--r-- 1 boincer umatlas      5911 Nov 24 08:02 init_data.xml
[2025-11-24 08:09:22] -rw------- 1 boincer umatlas 907897285 Nov 24 08:07 HITS.47556137._008035.pool.root.1
[2025-11-24 08:09:22] -rw------- 1 boincer umatlas      1061 Nov 24 08:08 memory_monitor_summary.json
[2025-11-24 08:09:22] -rw------- 1 boincer umatlas   1516227 Nov 24 08:08 agis_ddmendpoints.agis.ALL.json
[2025-11-24 08:09:22] -rw------- 1 boincer umatlas   1910072 Nov 24 08:08 log.47556137._008035.job.log.tgz.1
[2025-11-24 08:09:22] -rw------- 1 boincer umatlas        95 Nov 24 08:08 pilot_heartbeat.json
[2025-11-24 08:09:22] -rw------- 1 boincer umatlas      8660 Nov 24 08:08 heartbeat.json
[2025-11-24 08:09:22] -rw-r--r-- 1 boincer umatlas      8192 Nov 24 08:09 boinc_mmap_file
[2025-11-24 08:09:22] -rw-r--r-- 1 boincer umatlas        29 Nov 24 08:09 wrapper_checkpoint.txt
[2025-11-24 08:09:22] -rw------- 1 boincer umatlas      4746 Nov 24 08:09 pilotlog.txt
[2025-11-24 08:09:22] -rw------- 1 boincer umatlas   5516168 Nov 24 08:09 log.47556137._008035.job.log.1
[2025-11-24 08:09:22] -rw------- 1 boincer umatlas       353 Nov 24 08:09 output.list
[2025-11-24 08:09:22] -rw-r--r-- 1 boincer umatlas       620 Nov 24 08:09 runtime_log
[2025-11-24 08:09:22] -rw------- 1 boincer umatlas   7444480 Nov 24 08:09 result.tar.gz
[2025-11-24 08:09:22] -rw------- 1 boincer umatlas       667 Nov 24 08:09 V5tKDmbgSh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmYeIKDmjRl1xm.diag
[2025-11-24 08:09:22] -rw-r--r-- 1 boincer umatlas      9338 Nov 24 08:09 runtime_log.err
[2025-11-24 08:09:22] -rw-r--r-- 1 boincer umatlas     21406 Nov 24 08:09 stderr.txt
[2025-11-24 08:09:22] HITS file was successfully produced:
[2025-11-24 08:09:22] -rw------- 1 boincer umatlas 907897285 Nov 24 08:07 shared/HITS.pool.root.1
[2025-11-24 08:09:22]  *** Contents of shared directory: ***
[2025-11-24 08:09:22] total 1291616
[2025-11-24 08:09:22] -rw-r--r-- 2 boincer umatlas 406652188 Nov 23 21:01 ATLAS.root_0
[2025-11-24 08:09:22] -rw-r--r-- 2 boincer umatlas     15847 Nov 23 21:01 start_atlas.sh
[2025-11-24 08:09:22] -rw-r--r-- 2 boincer umatlas    590098 Nov 23 21:01 input.tar.gz
[2025-11-24 08:09:22] -rw------- 1 boincer umatlas 907897285 Nov 24 08:07 HITS.pool.root.1
[2025-11-24 08:09:22] -rw------- 1 boincer umatlas   7444480 Nov 24 08:09 result.tar.gz
08:09:24 (14658): run_atlas exited; CPU time 307941.205643
08:09:24 (14658): called boinc_finish(0)

</stderr_txt>
]]>

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