Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:41:31 (19383): wrapper (7.7.26015): starting
14:41:31 (19383): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 14:41:31] Arguments: --nthreads 8
[2025-11-26 14:41:31] Threads: 8
[2025-11-26 14:41:31] Checking for CVMFS
[2025-11-26 14:41:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 14:41:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 14:41:33] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 14:41:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 14:41:34] 2.11.2.0 6805 285278 143088 153323 1 85 16307883 25165825 1288 130560 40 121740679 99.857 81387396 2995 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-26 14:41:34] CVMFS is ok
[2025-11-26 14:41:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 14:41:34] Checking for apptainer binary...
[2025-11-26 14:41:34] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 14:41:34] Running /usr/bin/apptainer --version
[2025-11-26 14:41:34] apptainer version 1.3.2-1.el7
[2025-11-26 14:41:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 14:41:47] cg-vwn251.simple-grid.lan
[2025-11-26 14:41:47] apptainer works
[2025-11-26 14:41:48] Set ATHENA_PROC_NUMBER=8
[2025-11-26 14:41:48] Set ATHENA_CORE_NUMBER=8
[2025-11-26 14:41:48] Starting ATLAS job with PandaID=6895349992
[2025-11-26 14:41:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 13:56:10]  *** The last 200 lines of the pilot log: ***
[2025-11-27 13:56:10] 2025-11-27 12:55:21,950 | INFO     | time since job start (83385s) is within the limit (172800.0s)
[2025-11-27 13:56:10] 2025-11-27 12:55:22,766 | INFO     | monitor loop #5619: job 0:6895349992 is in state 'finished'
[2025-11-27 13:56:10] 2025-11-27 12:55:22,767 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 13:56:10] 2025-11-27 12:55:23,958 | INFO     | time since job start (83387s) is within the limit (172800.0s)
[2025-11-27 13:56:10] 2025-11-27 12:55:25,271 | INFO     | monitor loop #5620: job 0:6895349992 is in state 'finished'
[2025-11-27 13:56:10] 2025-11-27 12:55:25,272 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 13:56:10] 2025-11-27 12:55:25,970 | INFO     | time since job start (83389s) is within the limit (172800.0s)
[2025-11-27 13:56:10] 2025-11-27 12:55:27,776 | INFO     | monitor loop #5621: job 0:6895349992 is in state 'finished'
[2025-11-27 13:56:10] 2025-11-27 12:55:27,777 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 13:56:10] 2025-11-27 12:55:27,977 | INFO     | time since job start (83391s) is within the limit (172800.0s)
[2025-11-27 13:56:10] 2025-11-27 12:55:29,221 | INFO     | PID=23228 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 13:56:10] 2025-11-27 12:55:29,221 | INFO     | .. there are 9 such processes running
[2025-11-27 13:56:10] 2025-11-27 12:55:30,225 | INFO     | time since job start (83394s) is within the limit (172800.0s)
[2025-11-27 13:56:10] 2025-11-27 12:55:30,282 | INFO     | monitor loop #5622: job 0:6895349992 is in state 'finished'
[2025-11-27 13:56:10] 2025-11-27 12:55:30,283 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 13:56:10] 2025-11-27 12:55:32,128 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 13:56:10] 2025-11-27 12:55:32,130 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-27 13:56:10] 2025-11-27 12:55:32,138 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-6895349992/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 13:56:10] 2025-11-27 12:55:32,139 | INFO     | extracted standard info from prmon json
[2025-11-27 13:56:10] 2025-11-27 12:55:32,139 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 13:56:10] 2025-11-27 12:55:32,139 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 13:56:10] 2025-11-27 12:55:32,174 | INFO     | fitting pss+swap vs Time
[2025-11-27 13:56:10] 2025-11-27 12:55:32,176 | INFO     | sum of square deviations: 774849212451.7179
[2025-11-27 13:56:10] 2025-11-27 12:55:32,242 | INFO     | sum of deviations: 3069124545351.7373
[2025-11-27 13:56:10] 2025-11-27 12:55:32,243 | INFO     | mean x: 1764206606.0781136
[2025-11-27 13:56:10] 2025-11-27 12:55:32,243 | INFO     | mean y: 2844072.7855563746
[2025-11-27 13:56:10] 2025-11-27 12:55:32,243 | INFO     | intersect: -6985057199.842261
[2025-11-27 13:56:10] 2025-11-27 12:55:32,245 | INFO     | chi2: 19.477832710750274
[2025-11-27 13:56:10] 2025-11-27 12:55:32,247 | INFO     | sum of square deviations: 766316140520.8873
[2025-11-27 13:56:10] 2025-11-27 12:55:32,260 | INFO     | time since job start (83396s) is within the limit (172800.0s)
[2025-11-27 13:56:10] 2025-11-27 12:55:32,331 | INFO     | sum of deviations: 3538224430292.5244
[2025-11-27 13:56:10] 2025-11-27 12:55:32,331 | INFO     | mean x: 1764206453.5821006
[2025-11-27 13:56:10] 2025-11-27 12:55:32,331 | INFO     | mean y: 2852456.2115384615
[2025-11-27 13:56:10] 2025-11-27 12:55:32,331 | INFO     | intersect: -8142817514.801922
[2025-11-27 13:56:10] 2025-11-27 12:55:32,333 | INFO     | chi2: 16.004762017898084
[2025-11-27 13:56:10] 2025-11-27 12:55:32,333 | INFO     | current chi2=16.004762017898084 (change=17.83088880794895 %)
[2025-11-27 13:56:10] 2025-11-27 12:55:32,333 | INFO     | right removable region: 1351
[2025-11-27 13:56:10] 2025-11-27 12:55:32,335 | INFO     | sum of square deviations: 766315248090.887
[2025-11-27 13:56:10] 2025-11-27 12:55:32,390 | INFO     | sum of deviations: 2515638165953.074
[2025-11-27 13:56:10] 2025-11-27 12:55:32,391 | INFO     | mean x: 1764206758.5821006
[2025-11-27 13:56:10] 2025-11-27 12:55:32,391 | INFO     | mean y: 2853962.697485207
[2025-11-27 13:56:10] 2025-11-27 12:55:32,391 | INFO     | intersect: -5788634417.023654
[2025-11-27 13:56:10] 2025-11-27 12:55:32,393 | INFO     | chi2: 15.065991647844978
[2025-11-27 13:56:10] 2025-11-27 12:55:32,393 | INFO     | current chi2=15.065991647844978 (change=22.650574776064776 %)
[2025-11-27 13:56:10] 2025-11-27 12:55:32,393 | INFO     | left removable region: 10
[2025-11-27 13:56:10] 2025-11-27 12:55:32,395 | INFO     | sum of square deviations: 747762624812.9
[2025-11-27 13:56:10] 2025-11-27 12:55:32,449 | INFO     | sum of deviations: 2633784281532.162
[2025-11-27 13:56:10] 2025-11-27 12:55:32,450 | INFO     | mean x: 1764206728.090977
[2025-11-27 13:56:10] 2025-11-27 12:55:32,450 | INFO     | mean y: 2872842.244593587
[2025-11-27 13:56:10] 2025-11-27 12:55:32,450 | INFO     | intersect: -6211050929.329206
[2025-11-27 13:56:10] 2025-11-27 12:55:32,452 | INFO     | chi2: 7.622496135306052
[2025-11-27 13:56:10] 2025-11-27 12:55:32,452 | INFO     | current memory leak: 3.52 B/s (using 1341 data points, chi2=7.62)
[2025-11-27 13:56:10] 2025-11-27 12:55:32,453 | INFO     | could have reported an average CPU frequency of 1999 MHz (46 samples)
[2025-11-27 13:56:10] 2025-11-27 12:55:32,454 | INFO     | ..............................
[2025-11-27 13:56:10] 2025-11-27 12:55:32,454 | INFO     | . Timing measurements:
[2025-11-27 13:56:10] 2025-11-27 12:55:32,454 | INFO     | . get job = 0 s
[2025-11-27 13:56:10] 2025-11-27 12:55:32,454 | INFO     | . initial setup = 7 s
[2025-11-27 13:56:10] 2025-11-27 12:55:32,454 | INFO     | . payload setup = 152 s
[2025-11-27 13:56:10] 2025-11-27 12:55:32,454 | INFO     | . stage-in = 0 s
[2025-11-27 13:56:10] 2025-11-27 12:55:32,454 | INFO     | . payload execution = 82935 s
[2025-11-27 13:56:10] 2025-11-27 12:55:32,455 | INFO     | . stage-out = 4 s
[2025-11-27 13:56:10] 2025-11-27 12:55:32,455 | INFO     | . log creation = 1 s
[2025-11-27 13:56:10] 2025-11-27 12:55:32,455 | INFO     | ..............................
[2025-11-27 13:56:10] 2025-11-27 12:55:32,588 | INFO     | 
[2025-11-27 13:56:10] 2025-11-27 12:55:32,589 | INFO     | job summary report
[2025-11-27 13:56:10] 2025-11-27 12:55:32,589 | INFO     | --------------------------------------------------
[2025-11-27 13:56:10] 2025-11-27 12:55:32,589 | INFO     | PanDA job id: 6895349992
[2025-11-27 13:56:10] 2025-11-27 12:55:32,589 | INFO     | task id: 47556137
[2025-11-27 13:56:10] 2025-11-27 12:55:32,589 | INFO     | errors: (none)
[2025-11-27 13:56:10] 2025-11-27 12:55:32,589 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 13:56:10] 2025-11-27 12:55:32,589 | INFO     | pilot state: finished 
[2025-11-27 13:56:10] 2025-11-27 12:55:32,589 | INFO     | transexitcode: 0
[2025-11-27 13:56:10] 2025-11-27 12:55:32,589 | INFO     | exeerrorcode: 0
[2025-11-27 13:56:10] 2025-11-27 12:55:32,589 | INFO     | exeerrordiag: 
[2025-11-27 13:56:10] 2025-11-27 12:55:32,589 | INFO     | exitcode: 0
[2025-11-27 13:56:10] 2025-11-27 12:55:32,590 | INFO     | exitmsg: OK
[2025-11-27 13:56:10] 2025-11-27 12:55:32,590 | INFO     | cpuconsumptiontime: 313268 s
[2025-11-27 13:56:10] 2025-11-27 12:55:32,590 | INFO     | nevents: 1000
[2025-11-27 13:56:10] 2025-11-27 12:55:32,590 | INFO     | neventsw: 0
[2025-11-27 13:56:10] 2025-11-27 12:55:32,590 | INFO     | pid: 29781
[2025-11-27 13:56:10] 2025-11-27 12:55:32,590 | INFO     | pgrp: 29781
[2025-11-27 13:56:10] 2025-11-27 12:55:32,590 | INFO     | corecount: 8
[2025-11-27 13:56:10] 2025-11-27 12:55:32,590 | INFO     | event service: False
[2025-11-27 13:56:10] 2025-11-27 12:55:32,590 | INFO     | sizes: {0: 2284086, 1: 2284285, 12: 2284285, 23: 2284313, 33: 2284341, 44: 2284397, 55: 2284553, 66: 2284581, 76: 2284609, 87: 2284665, 96: 2284955, 98: 2285263, 8
[2025-11-27 13:56:10] 2025-11-27 12:55:32,590 | INFO     | --------------------------------------------------
[2025-11-27 13:56:10] 2025-11-27 12:55:32,590 | INFO     | 
[2025-11-27 13:56:10] 2025-11-27 12:55:32,591 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-11-27 13:56:10] 2025-11-27 12:55:33,056 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 13:56:10] 2025-11-27 12:55:33,056 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 13:56:10] 2025-11-27 12:55:33,056 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 13:56:10] 2025-11-27 12:55:33,056 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 13:56:10] 2025-11-27 12:55:33,056 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 13:56:10] 2025-11-27 12:55:33,056 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 13:56:10] 2025-11-27 12:55:33,057 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 13:56:10] 2025-11-27 12:55:33,057 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 13:56:10] 2025-11-27 12:55:33,057 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 13:56:10] 2025-11-27 12:55:33,057 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 13:56:10] 2025-11-27 12:55:33,057 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 13:56:10] 2025-11-27 12:55:33,057 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 13:56:10] 2025-11-27 12:55:33,057 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 13:56:10] 2025-11-27 12:55:33,057 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 13:56:10] 2025-11-27 12:55:33,057 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 13:56:10] 2025-11-27 12:55:33,057 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 13:56:10] 2025-11-27 12:55:33,057 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 13:56:10] 2025-11-27 12:55:33,057 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 13:56:10] 2025-11-27 12:55:33,058 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 13:56:10] 2025-11-27 12:55:33,058 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 13:56:10] 2025-11-27 12:55:33,058 | INFO     | job 6895349992 has completed (purged errors)
[2025-11-27 13:56:10] 2025-11-27 12:55:33,058 | INFO     | overall cleanup function is called
[2025-11-27 13:56:10] 2025-11-27 12:55:34,075 | INFO     | --- collectZombieJob: --- 10, [29781]
[2025-11-27 13:56:10] 2025-11-27 12:55:34,076 | INFO     | zombie collector waiting for pid 29781
[2025-11-27 13:56:10] 2025-11-27 12:55:34,076 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 13:56:10] 2025-11-27 12:55:34,076 | INFO     | collected zombie processes
[2025-11-27 13:56:10] 2025-11-27 12:55:34,076 | INFO     | will attempt to kill all subprocesses of pid=29781
[2025-11-27 13:56:10] 2025-11-27 12:55:34,195 | INFO     | process IDs to be killed: [29781] (in reverse order)
[2025-11-27 13:56:10] 2025-11-27 12:55:35,021 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 13:56:10] 2025-11-27 12:55:35,021 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 13:56:10] 2025-11-27 12:55:35,024 | INFO     | did not find any defunct processes belonging to 29781
[2025-11-27 13:56:10] 2025-11-27 12:55:35,027 | INFO     | did not find any defunct processes belonging to 29781
[2025-11-27 13:56:10] 2025-11-27 12:55:35,078 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 13:56:10] 2025-11-27 12:55:35,078 | INFO     | ready for new job
[2025-11-27 13:56:10] 2025-11-27 12:55:35,078 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 13:56:10] 2025-11-27 12:55:35,083 | INFO     | ***************************************
[2025-11-27 13:56:10] 2025-11-27 12:55:35,083 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 13:56:10] 2025-11-27 12:55:35,083 | INFO     | ***************************************
[2025-11-27 13:56:10] 2025-11-27 12:55:35,083 | INFO     | 
[2025-11-27 13:56:10] 2025-11-27 12:55:35,084 | INFO     | pilot is running in a VM
[2025-11-27 13:56:10] 2025-11-27 12:55:35,084 | INFO     | architecture information:
[2025-11-27 13:56:10] 2025-11-27 12:55:35,096 | INFO     | executing command: cat /etc/os-release
[2025-11-27 13:56:10] 2025-11-27 12:55:35,396 | INFO     | cat /etc/os-release:
[2025-11-27 13:56:10] NAME="CentOS Linux"
[2025-11-27 13:56:10] VERSION="7 (Core)"
[2025-11-27 13:56:10] ID="centos"
[2025-11-27 13:56:10] ID_LIKE="rhel fedora"
[2025-11-27 13:56:10] VERSION_ID="7"
[2025-11-27 13:56:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 13:56:10] ANSI_COLOR="0;31"
[2025-11-27 13:56:10] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 13:56:10] HOME_URL="https://www.centos.org/"
[2025-11-27 13:56:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 13:56:10] 
[2025-11-27 13:56:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 13:56:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 13:56:10] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 13:56:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 13:56:10] 
[2025-11-27 13:56:10] 2025-11-27 12:55:35,396 | INFO     | ***************************************
[2025-11-27 13:56:10] 2025-11-27 12:55:35,900 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-11-27 13:56:10] 2025-11-27 12:55:36,175 | INFO     | sufficient remaining disk space (495169044480 B)
[2025-11-27 13:56:10] 2025-11-27 12:55:36,175 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 13:56:10] 2025-11-27 12:55:36,175 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 13:56:10] 2025-11-27 12:55:36,176 | INFO     | update_server=False
[2025-11-27 13:56:10] 2025-11-27 12:55:36,176 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 13:56:10] 2025-11-27 12:55:36,260 | INFO     | all payload control threads have been joined
[2025-11-27 13:56:10] 2025-11-27 12:55:36,335 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 13:56:10] 2025-11-27 12:55:36,336 | INFO     | aborting loop
[2025-11-27 13:56:10] 2025-11-27 12:55:36,576 | INFO     | all data control threads have been joined
[2025-11-27 13:56:10] 2025-11-27 12:55:36,889 | INFO     | all job control threads have been joined
[2025-11-27 13:56:10] 2025-11-27 12:55:36,915 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 13:56:10] 2025-11-27 12:55:37,183 | INFO     | [job] retrieve thread has finished
[2025-11-27 13:56:10] 2025-11-27 12:55:37,266 | INFO     | [payload] control thread has finished
[2025-11-27 13:56:10] 2025-11-27 12:55:37,301 | INFO     | [data] copytool_in thread has finished
[2025-11-27 13:56:10] 2025-11-27 12:55:37,340 | INFO     | [job] job monitor thread has finished
[2025-11-27 13:56:10] 2025-11-27 12:55:37,426 | INFO     | [job] validate thread has finished
[2025-11-27 13:56:10] 2025-11-27 12:55:37,573 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 13:56:10] 2025-11-27 12:55:37,582 | INFO     | [data] control thread has finished
[2025-11-27 13:56:10] 2025-11-27 12:55:37,603 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 13:56:10] 2025-11-27 12:55:37,778 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 13:56:10] 2025-11-27 12:55:37,815 | INFO     | [payload] failed_post thread has finished
[2025-11-27 13:56:10] 2025-11-27 12:55:37,865 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 13:56:10] 2025-11-27 12:55:37,895 | INFO     | [job] control thread has finished
[2025-11-27 13:56:10] 2025-11-27 12:55:38,186 | INFO     | [payload] validate_post thread has finished
[2025-11-27 13:56:10] 2025-11-27 12:55:38,511 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 13:56:10] 2025-11-27 12:55:38,573 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 13:56:10] 2025-11-27 12:55:38,609 | INFO     | [job] queue monitor thread has finished
[2025-11-27 13:56:10] 2025-11-27 12:55:38,922 | INFO     | [data] copytool_out thread has finished
[2025-11-27 13:56:10] 2025-11-27 12:55:42,582 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 13:56:10] 2025-11-27 12:56:01,296 | INFO     | [monitor] cgroup control has ended
[2025-11-27 13:56:10] 2025-11-27 12:56:02,078 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140053311338304)>', '<ExcThread(monitor, started 140053003085568)>']
[2025-11-27 13:56:10] 2025-11-27 12:56:05,423 | INFO     | PID=23228 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 13:56:10] 2025-11-27 12:56:05,423 | INFO     | .. there are 9 such processes running
[2025-11-27 13:56:10] 2025-11-27 12:56:05,424 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 13:56:10] 2025-11-27 12:56:05,424 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 13:56:10] 2025-11-27 12:56:05,424 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 13:56:10] 2025-11-27 12:56:05,424 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 13:56:10] 2025-11-27 12:56:05,424 | INFO     | [monitor] control thread has ended
[2025-11-27 13:56:10] 2025-11-27 12:56:07,104 | INFO     | all workflow threads have been joined
[2025-11-27 13:56:10] 2025-11-27 12:56:07,105 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 13:56:10] 2025-11-27 12:56:07,105 | INFO     | traces error code: 0
[2025-11-27 13:56:10] 2025-11-27 12:56:07,105 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 13:56:10] 2025-11-27 12:56:07,369 [wrapper] ==== pilot stdout END ====
[2025-11-27 13:56:10] 2025-11-27 12:56:07,482 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 13:56:10] 2025-11-27 12:56:07,569 [wrapper] pilotpid: 23228
[2025-11-27 13:56:10] 2025-11-27 12:56:07,665 [wrapper] Pilot exit status: 0
[2025-11-27 13:56:10] 2025-11-27 12:56:08,055 [wrapper] pandaids: 6895349992
[2025-11-27 13:56:10] 2025-11-27 12:56:08,418 [wrapper] cleanup supervisor_pilot 32463 23229
[2025-11-27 13:56:10] 2025-11-27 12:56:08,455 [wrapper] Test setup, not cleaning
[2025-11-27 13:56:10] 2025-11-27 12:56:08,493 [wrapper] apfmon messages muted
[2025-11-27 13:56:10] 2025-11-27 12:56:08,531 [wrapper] ==== wrapper stdout END ====
[2025-11-27 13:56:10] 2025-11-27 12:56:08,560 [wrapper] ==== wrapper stderr END ====
[2025-11-27 13:56:10]  *** Error codes and diagnostics ***
[2025-11-27 13:56:10]     "exeErrorCode": 0,
[2025-11-27 13:56:10]     "exeErrorDiag": "",
[2025-11-27 13:56:10]     "pilotErrorCode": 0,
[2025-11-27 13:56:10]     "pilotErrorDiag": "",
[2025-11-27 13:56:10]  *** Listing of results directory ***
[2025-11-27 13:56:10] total 1311196
[2025-11-27 13:56:10] -rw-r--r--. 1 boinc boinc    576529 Nov 22 20:25 pilot3.tar.gz
[2025-11-27 13:56:10] -rwx------. 1 boinc boinc     36292 Nov 22 21:10 runpilot2-wrapper.sh
[2025-11-27 13:56:10] -rw-r--r--. 1 boinc boinc      5112 Nov 22 21:10 queuedata.json
[2025-11-27 13:56:10] -rw-r--r--. 1 boinc boinc       100 Nov 26 14:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 13:56:10] -rwxr-xr-x. 1 boinc boinc      7986 Nov 26 14:41 run_atlas
[2025-11-27 13:56:10] -rw-r--r--. 1 boinc boinc       105 Nov 26 14:41 job.xml
[2025-11-27 13:56:10] -rw-r--r--. 1 boinc boinc      6390 Nov 26 14:41 init_data.xml
[2025-11-27 13:56:10] -rw-r--r--. 2 boinc boinc 409774366 Nov 26 14:41 EVNT.47483658._000488.pool.root.1
[2025-11-27 13:56:10] -rw-r--r--. 2 boinc boinc     15847 Nov 26 14:41 start_atlas.sh
[2025-11-27 13:56:10] drwxrwx--x. 2 boinc boinc        68 Nov 26 14:41 shared
[2025-11-27 13:56:10] -rw-r--r--. 2 boinc boinc    590100 Nov 26 14:41 input.tar.gz
[2025-11-27 13:56:10] -rw-r--r--. 1 boinc boinc         0 Nov 26 14:41 boinc_lockfile
[2025-11-27 13:56:10] -rw-r--r--. 1 boinc boinc      2781 Nov 26 14:41 pandaJob.out
[2025-11-27 13:56:10] -rw-------. 1 boinc boinc    991830 Nov 26 14:45 agis_schedconf.cvmfs.json
[2025-11-27 13:56:10] drwx------. 5 boinc boinc      4096 Nov 26 14:45 pilot3
[2025-11-27 13:56:10] -rw-r--r--. 1 boinc boinc       533 Nov 27 13:30 boinc_task_state.xml
[2025-11-27 13:56:10] -rw-------. 1 boinc boinc 901917182 Nov 27 13:52 HITS.47556137._004831.pool.root.1
[2025-11-27 13:56:10] -rw-------. 1 boinc boinc      1028 Nov 27 13:53 memory_monitor_summary.json
[2025-11-27 13:56:10] -rw-------. 1 boinc boinc   1516240 Nov 27 13:53 agis_ddmendpoints.agis.ALL.json
[2025-11-27 13:56:10] -rw-------. 1 boinc boinc   2440953 Nov 27 13:53 log.47556137._004831.job.log.tgz.1
[2025-11-27 13:56:10] -rw-------. 1 boinc boinc      8623 Nov 27 13:55 heartbeat.json
[2025-11-27 13:56:10] -rw-------. 1 boinc boinc        95 Nov 27 13:55 pilot_heartbeat.json
[2025-11-27 13:56:10] -rw-------. 1 boinc boinc      4884 Nov 27 13:56 pilotlog.txt
[2025-11-27 13:56:10] -rw-------. 1 boinc boinc  11095454 Nov 27 13:56 log.47556137._004831.job.log.1
[2025-11-27 13:56:10] -rw-r--r--. 1 boinc boinc      8192 Nov 27 13:56 boinc_mmap_file
[2025-11-27 13:56:10] -rw-r--r--. 1 boinc boinc        29 Nov 27 13:56 wrapper_checkpoint.txt
[2025-11-27 13:56:10] -rw-------. 1 boinc boinc       353 Nov 27 13:56 output.list
[2025-11-27 13:56:10] -rw-r--r--. 1 boinc boinc       620 Nov 27 13:56 runtime_log
[2025-11-27 13:56:10] -rw-------. 1 boinc boinc  13557760 Nov 27 13:56 result.tar.gz
[2025-11-27 13:56:10] -rw-r--r--. 1 boinc boinc      8817 Nov 27 13:56 runtime_log.err
[2025-11-27 13:56:10] -rw-------. 1 boinc boinc       662 Nov 27 13:56 dOKLDm268g8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmEHIKDmkm0Ncm.diag
[2025-11-27 13:56:10] -rw-r--r--. 1 boinc boinc     21439 Nov 27 13:56 stderr.txt
[2025-11-27 13:56:10] HITS file was successfully produced:
[2025-11-27 13:56:10] -rw-------. 1 boinc boinc 901917182 Nov 27 13:52 shared/HITS.pool.root.1
[2025-11-27 13:56:10]  *** Contents of shared directory: ***
[2025-11-27 13:56:10] total 1294788
[2025-11-27 13:56:10] -rw-r--r--. 2 boinc boinc 409774366 Nov 26 14:41 ATLAS.root_0
[2025-11-27 13:56:10] -rw-r--r--. 2 boinc boinc     15847 Nov 26 14:41 start_atlas.sh
[2025-11-27 13:56:10] -rw-r--r--. 2 boinc boinc    590100 Nov 26 14:41 input.tar.gz
[2025-11-27 13:56:10] -rw-------. 1 boinc boinc 901917182 Nov 27 13:52 HITS.pool.root.1
[2025-11-27 13:56:10] -rw-------. 1 boinc boinc  13557760 Nov 27 13:56 result.tar.gz
13:56:11 (19383): run_atlas exited; CPU time 313847.450550
13:56:11 (19383): called boinc_finish(0)

</stderr_txt>
]]>

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