Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:00:17 (3941626): wrapper (7.7.26015): starting
00:00:17 (3941626): wrapper: running run_atlas (--nthreads 9)
[2025-11-24 00:00:17] Arguments: --nthreads 9
[2025-11-24 00:00:18] Threads: 9
[2025-11-24 00:00:18] Checking for CVMFS
[2025-11-24 00:00:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 00:00:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 00:00:19] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 00:00:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 00:00:20] 2.13.3.0 12161 26722 324028 153233 3 325 38832466 40960001 20203 16776704 0 68082229 99.547 82051791 38847 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-24 00:00:20] CVMFS is ok
[2025-11-24 00:00:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 00:00:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 00:00:20] Further information can be found at the LHC@home message board.
[2025-11-24 00:00:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 00:00:20] Checking for apptainer binary...
[2025-11-24 00:00:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 00:00:20] Running /usr/bin/apptainer --version
[2025-11-24 00:00:20] apptainer version 1.4.4-1.el9
[2025-11-24 00:00:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 00:00:21] c6-5-7-1.aglt2.org
[2025-11-24 00:00:21] apptainer works
[2025-11-24 00:00:21] Set ATHENA_PROC_NUMBER=9
[2025-11-24 00:00:21] Set ATHENA_CORE_NUMBER=9
[2025-11-24 00:00:21] Starting ATLAS job with PandaID=6895355111
[2025-11-24 00:00:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 08:33:05]  *** The last 200 lines of the pilot log: ***
[2025-11-25 08:33:05] 2025-11-25 13:32:04,980 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 08:33:05] 2025-11-25 13:32:06,221 | INFO     | time since job start (116987s) is within the limit (172800.0s)
[2025-11-25 08:33:05] 2025-11-25 13:32:07,510 | INFO     | monitor loop #6782: job 0:6895355111 is in state 'finished'
[2025-11-25 08:33:05] 2025-11-25 13:32:07,510 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 08:33:05] 2025-11-25 13:32:09,892 | INFO     | PID=3951823 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 08:33:05] 2025-11-25 13:32:09,893 | INFO     | .. there are 26 such processes running
[2025-11-25 08:33:05] 2025-11-25 13:32:10,067 | INFO     | monitor loop #6783: job 0:6895355111 is in state 'finished'
[2025-11-25 08:33:05] 2025-11-25 13:32:10,067 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 08:33:05] 2025-11-25 13:32:10,893 | INFO     | time since job start (116991s) is within the limit (172800.0s)
[2025-11-25 08:33:05] 2025-11-25 13:32:12,631 | INFO     | monitor loop #6784: job 0:6895355111 is in state 'finished'
[2025-11-25 08:33:05] 2025-11-25 13:32:12,631 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 08:33:05] 2025-11-25 13:32:12,901 | INFO     | time since job start (116993s) is within the limit (172800.0s)
[2025-11-25 08:33:05] 2025-11-25 13:32:14,926 | INFO     | time since job start (116995s) is within the limit (172800.0s)
[2025-11-25 08:33:05] 2025-11-25 13:32:15,072 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-25 08:33:05] 2025-11-25 13:32:15,143 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 3045.71725
[2025-11-25 08:33:05] 2025-11-25 13:32:15,190 | INFO     | monitor loop #6785: job 0:6895355111 is in state 'finished'
[2025-11-25 08:33:05] 2025-11-25 13:32:15,190 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 08:33:05] 2025-11-25 13:32:15,193 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6895355111/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 08:33:05] 2025-11-25 13:32:15,203 | INFO     | extracted standard info from prmon json
[2025-11-25 08:33:05] 2025-11-25 13:32:15,203 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 08:33:05] 2025-11-25 13:32:15,204 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 08:33:05] 2025-11-25 13:32:15,489 | INFO     | fitting pss+swap vs Time
[2025-11-25 08:33:05] 2025-11-25 13:32:15,526 | INFO     | sum of square deviations: 2174136699801.2874
[2025-11-25 08:33:05] 2025-11-25 13:32:15,786 | INFO     | sum of deviations: 8355833969298.473
[2025-11-25 08:33:05] 2025-11-25 13:32:15,786 | INFO     | mean x: 1764019105.9184954
[2025-11-25 08:33:05] 2025-11-25 13:32:15,787 | INFO     | mean y: 2967496.1248693834
[2025-11-25 08:33:05] 2025-11-25 13:32:15,787 | INFO     | intersect: -6776666355.358564
[2025-11-25 08:33:05] 2025-11-25 13:32:15,799 | INFO     | chi2: 47.54884809714549
[2025-11-25 08:33:05] 2025-11-25 13:32:15,813 | INFO     | sum of square deviations: 2157143799965.202
[2025-11-25 08:33:05] 2025-11-25 13:32:16,136 | INFO     | sum of deviations: 9040807278659.826
[2025-11-25 08:33:05] 2025-11-25 13:32:16,136 | INFO     | mean x: 1764018953.427449
[2025-11-25 08:33:05] 2025-11-25 13:32:16,136 | INFO     | mean y: 2973641.9119958095
[2025-11-25 08:33:05] 2025-11-25 13:32:16,136 | INFO     | intersect: -7390207746.411786
[2025-11-25 08:33:05] 2025-11-25 13:32:16,138 | INFO     | chi2: 43.85188460254242
[2025-11-25 08:33:05] 2025-11-25 13:32:16,138 | INFO     | current chi2=43.85188460254242 (change=7.775085291340651 %)
[2025-11-25 08:33:05] 2025-11-25 13:32:16,138 | INFO     | right removable region: 1908
[2025-11-25 08:33:05] 2025-11-25 13:32:16,141 | INFO     | sum of square deviations: 2157139808735.2017
[2025-11-25 08:33:05] 2025-11-25 13:32:16,203 | INFO     | sum of deviations: 7517719163552.563
[2025-11-25 08:33:05] 2025-11-25 13:32:16,203 | INFO     | mean x: 1764019258.427449
[2025-11-25 08:33:05] 2025-11-25 13:32:16,203 | INFO     | mean y: 2975015.9895233107
[2025-11-25 08:33:05] 2025-11-25 13:32:16,203 | INFO     | intersect: -6144703187.46053
[2025-11-25 08:33:05] 2025-11-25 13:32:16,205 | INFO     | chi2: 42.93374566533365
[2025-11-25 08:33:05] 2025-11-25 13:32:16,206 | INFO     | current chi2=42.93374566533365 (change=9.706023629390288 %)
[2025-11-25 08:33:05] 2025-11-25 13:32:16,206 | INFO     | left removable region: 10
[2025-11-25 08:33:05] 2025-11-25 13:32:16,208 | INFO     | sum of square deviations: 2120063892086.2998
[2025-11-25 08:33:05] 2025-11-25 13:32:16,296 | INFO     | sum of deviations: 7593211759688.696
[2025-11-25 08:33:05] 2025-11-25 13:32:16,297 | INFO     | mean x: 1764019227.9452055
[2025-11-25 08:33:05] 2025-11-25 13:32:16,297 | INFO     | mean y: 2988949.593256059
[2025-11-25 08:33:05] 2025-11-25 13:32:16,297 | INFO     | intersect: -6315014765.270856
[2025-11-25 08:33:05] 2025-11-25 13:32:16,299 | INFO     | chi2: 35.190298510717625
[2025-11-25 08:33:05] 2025-11-25 13:32:16,300 | INFO     | current memory leak: 3.58 B/s (using 1898 data points, chi2=35.19)
[2025-11-25 08:33:05] 2025-11-25 13:32:16,314 | INFO     | could have reported an average CPU frequency of 2931 MHz (67 samples)
[2025-11-25 08:33:05] 2025-11-25 13:32:16,314 | INFO     | ..............................
[2025-11-25 08:33:05] 2025-11-25 13:32:16,314 | INFO     | . Timing measurements:
[2025-11-25 08:33:05] 2025-11-25 13:32:16,314 | INFO     | . get job = 1 s
[2025-11-25 08:33:05] 2025-11-25 13:32:16,314 | INFO     | . initial setup = 13 s
[2025-11-25 08:33:05] 2025-11-25 13:32:16,314 | INFO     | . payload setup = 81 s
[2025-11-25 08:33:05] 2025-11-25 13:32:16,314 | INFO     | . stage-in = 0 s
[2025-11-25 08:33:05] 2025-11-25 13:32:16,314 | INFO     | . payload execution = 116759 s
[2025-11-25 08:33:05] 2025-11-25 13:32:16,314 | INFO     | . stage-out = 16 s
[2025-11-25 08:33:05] 2025-11-25 13:32:16,314 | INFO     | . log creation = 4 s
[2025-11-25 08:33:05] 2025-11-25 13:32:16,315 | INFO     | ..............................
[2025-11-25 08:33:05] 2025-11-25 13:32:16,794 | INFO     | 
[2025-11-25 08:33:05] 2025-11-25 13:32:16,794 | INFO     | job summary report
[2025-11-25 08:33:05] 2025-11-25 13:32:16,795 | INFO     | --------------------------------------------------
[2025-11-25 08:33:05] 2025-11-25 13:32:16,795 | INFO     | PanDA job id: 6895355111
[2025-11-25 08:33:05] 2025-11-25 13:32:16,795 | INFO     | task id: 47556149
[2025-11-25 08:33:05] 2025-11-25 13:32:16,795 | INFO     | errors: (none)
[2025-11-25 08:33:05] 2025-11-25 13:32:16,795 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 08:33:05] 2025-11-25 13:32:16,795 | INFO     | pilot state: finished 
[2025-11-25 08:33:05] 2025-11-25 13:32:16,795 | INFO     | transexitcode: 0
[2025-11-25 08:33:05] 2025-11-25 13:32:16,795 | INFO     | exeerrorcode: 0
[2025-11-25 08:33:05] 2025-11-25 13:32:16,795 | INFO     | exeerrordiag: 
[2025-11-25 08:33:05] 2025-11-25 13:32:16,795 | INFO     | exitcode: 0
[2025-11-25 08:33:05] 2025-11-25 13:32:16,795 | INFO     | exitmsg: OK
[2025-11-25 08:33:05] 2025-11-25 13:32:16,795 | INFO     | cpuconsumptiontime: 249500 s
[2025-11-25 08:33:05] 2025-11-25 13:32:16,795 | INFO     | nevents: 1000
[2025-11-25 08:33:05] 2025-11-25 13:32:16,796 | INFO     | neventsw: 0
[2025-11-25 08:33:05] 2025-11-25 13:32:16,796 | INFO     | pid: 3979227
[2025-11-25 08:33:05] 2025-11-25 13:32:16,796 | INFO     | pgrp: 3979227
[2025-11-25 08:33:05] 2025-11-25 13:32:16,796 | INFO     | corecount: 9
[2025-11-25 08:33:05] 2025-11-25 13:32:16,796 | INFO     | event service: False
[2025-11-25 08:33:05] 2025-11-25 13:32:16,796 | INFO     | sizes: {0: 2297928, 1: 2298613, 2: 2298812, 3: 2298812, 13: 2298840, 24: 2298896, 35: 2299052, 46: 2299370, 116843: 2378479, 116860: 2388269, 116865: 2388325, 1169
[2025-11-25 08:33:05] 2025-11-25 13:32:16,796 | INFO     | --------------------------------------------------
[2025-11-25 08:33:05] 2025-11-25 13:32:16,796 | INFO     | 
[2025-11-25 08:33:05] 2025-11-25 13:32:16,796 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-25 08:33:05] 2025-11-25 13:32:16,954 | INFO     | time since job start (116997s) is within the limit (172800.0s)
[2025-11-25 08:33:05] 2025-11-25 13:32:17,049 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 08:33:05] 2025-11-25 13:32:17,049 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 08:33:05] 2025-11-25 13:32:17,050 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 08:33:05] 2025-11-25 13:32:17,050 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 08:33:05] 2025-11-25 13:32:17,050 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 08:33:05] 2025-11-25 13:32:17,050 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 08:33:05] 2025-11-25 13:32:17,050 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 08:33:05] 2025-11-25 13:32:17,050 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 08:33:05] 2025-11-25 13:32:17,050 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 08:33:05] 2025-11-25 13:32:17,050 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 08:33:05] 2025-11-25 13:32:17,050 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 08:33:05] 2025-11-25 13:32:17,050 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 08:33:05] 2025-11-25 13:32:17,050 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 08:33:05] 2025-11-25 13:32:17,050 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 08:33:05] 2025-11-25 13:32:17,050 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 08:33:05] 2025-11-25 13:32:17,050 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 08:33:05] 2025-11-25 13:32:17,051 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 08:33:05] 2025-11-25 13:32:17,051 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 08:33:05] 2025-11-25 13:32:17,051 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 08:33:05] 2025-11-25 13:32:17,051 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 08:33:05] 2025-11-25 13:32:17,051 | INFO     | job 6895355111 has completed (purged errors)
[2025-11-25 08:33:05] 2025-11-25 13:32:17,051 | INFO     | overall cleanup function is called
[2025-11-25 08:33:05] 2025-11-25 13:32:18,169 | INFO     | --- collectZombieJob: --- 10, [3979227]
[2025-11-25 08:33:05] 2025-11-25 13:32:18,169 | INFO     | zombie collector waiting for pid 3979227
[2025-11-25 08:33:05] 2025-11-25 13:32:18,169 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 08:33:05] 2025-11-25 13:32:18,170 | INFO     | collected zombie processes
[2025-11-25 08:33:05] 2025-11-25 13:32:18,170 | INFO     | will attempt to kill all subprocesses of pid=3979227
[2025-11-25 08:33:05] 2025-11-25 13:32:19,001 [wrapper] supervise_pilot (15 min periods counter: 131)
[2025-11-25 08:33:05] 2025-11-25 13:32:22,004 | INFO     | process IDs to be killed: [3979227] (in reverse order)
[2025-11-25 08:33:05] 2025-11-25 13:32:22,293 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 08:33:05] 2025-11-25 13:32:22,293 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 08:33:05] 2025-11-25 13:32:22,462 | INFO     | did not find any defunct processes belonging to 3979227
[2025-11-25 08:33:05] 2025-11-25 13:32:22,494 | INFO     | did not find any defunct processes belonging to 3979227
[2025-11-25 08:33:05] 2025-11-25 13:32:22,495 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 08:33:05] 2025-11-25 13:32:22,495 | INFO     | ready for new job
[2025-11-25 08:33:05] 2025-11-25 13:32:22,496 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 08:33:05] 2025-11-25 13:32:22,502 | INFO     | ***************************************
[2025-11-25 08:33:05] 2025-11-25 13:32:22,502 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 08:33:05] 2025-11-25 13:32:22,502 | INFO     | ***************************************
[2025-11-25 08:33:05] 2025-11-25 13:32:22,502 | INFO     | 
[2025-11-25 08:33:05] 2025-11-25 13:32:22,505 | INFO     | architecture information:
[2025-11-25 08:33:05] 2025-11-25 13:32:22,506 | INFO     | executing command: cat /etc/os-release
[2025-11-25 08:33:05] 2025-11-25 13:32:22,539 | INFO     | cat /etc/os-release:
[2025-11-25 08:33:05] NAME="CentOS Linux"
[2025-11-25 08:33:05] VERSION="7 (Core)"
[2025-11-25 08:33:05] ID="centos"
[2025-11-25 08:33:05] ID_LIKE="rhel fedora"
[2025-11-25 08:33:05] VERSION_ID="7"
[2025-11-25 08:33:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 08:33:05] ANSI_COLOR="0;31"
[2025-11-25 08:33:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 08:33:05] HOME_URL="https://www.centos.org/"
[2025-11-25 08:33:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 08:33:05] 
[2025-11-25 08:33:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 08:33:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 08:33:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 08:33:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 08:33:05] 
[2025-11-25 08:33:05] 2025-11-25 13:32:22,539 | INFO     | ***************************************
[2025-11-25 08:33:05] 2025-11-25 13:32:23,047 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-25 08:33:05] 2025-11-25 13:32:23,106 | INFO     | sufficient remaining disk space (66775416832 B)
[2025-11-25 08:33:05] 2025-11-25 13:32:23,107 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 08:33:05] 2025-11-25 13:32:23,107 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 08:33:05] 2025-11-25 13:32:23,107 | INFO     | update_server=False
[2025-11-25 08:33:05] 2025-11-25 13:32:23,107 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 08:33:05] 2025-11-25 13:32:23,108 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 08:33:05] 2025-11-25 13:32:23,532 | INFO     | all payload control threads have been joined
[2025-11-25 08:33:05] 2025-11-25 13:32:23,674 | INFO     | all data control threads have been joined
[2025-11-25 08:33:05] 2025-11-25 13:32:23,801 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 08:33:05] 2025-11-25 13:32:23,801 | INFO     | aborting loop
[2025-11-25 08:33:05] 2025-11-25 13:32:24,116 | INFO     | [job] retrieve thread has finished
[2025-11-25 08:33:05] 2025-11-25 13:32:24,514 | INFO     | all job control threads have been joined
[2025-11-25 08:33:05] 2025-11-25 13:32:24,541 | INFO     | [payload] control thread has finished
[2025-11-25 08:33:05] 2025-11-25 13:32:24,681 | INFO     | [data] control thread has finished
[2025-11-25 08:33:05] 2025-11-25 13:32:24,791 | INFO     | [data] copytool_in thread has finished
[2025-11-25 08:33:05] 2025-11-25 13:32:24,855 | INFO     | [job] job monitor thread has finished
[2025-11-25 08:33:05] 2025-11-25 13:32:25,035 | INFO     | [job] validate thread has finished
[2025-11-25 08:33:05] 2025-11-25 13:32:25,039 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 08:33:05] 2025-11-25 13:32:25,043 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 08:33:05] 2025-11-25 13:32:25,114 | INFO     | [data] copytool_out thread has finished
[2025-11-25 08:33:05] 2025-11-25 13:32:25,314 | INFO     | [payload] failed_post thread has finished
[2025-11-25 08:33:05] 2025-11-25 13:32:25,318 | INFO     | [payload] validate_post thread has finished
[2025-11-25 08:33:05] 2025-11-25 13:32:25,371 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 08:33:05] 2025-11-25 13:32:25,380 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 08:33:05] 2025-11-25 13:32:25,520 | INFO     | [job] control thread has finished
[2025-11-25 08:33:05] 2025-11-25 13:32:25,603 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 08:33:05] 2025-11-25 13:32:25,702 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 08:33:05] 2025-11-25 13:32:26,609 | INFO     | [job] queue monitor thread has finished
[2025-11-25 08:33:05] 2025-11-25 13:32:29,711 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 08:33:05] 2025-11-25 13:32:50,988 | INFO     | PID=3951823 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 08:33:05] 2025-11-25 13:32:50,988 | INFO     | .. there are 26 such processes running
[2025-11-25 08:33:05] 2025-11-25 13:32:50,989 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 08:33:05] 2025-11-25 13:32:50,990 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 08:33:05] 2025-11-25 13:32:50,990 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 08:33:05] 2025-11-25 13:32:57,630 | INFO     | [monitor] cgroup control has ended
[2025-11-25 08:33:05] 2025-11-25 13:32:58,973 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140275119793984)>', '<ExcThread(monitor, started 140274621732608)>']
[2025-11-25 08:33:05] 2025-11-25 13:32:59,076 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 08:33:05] 2025-11-25 13:32:59,076 | INFO     | [monitor] control thread has ended
[2025-11-25 08:33:05] 2025-11-25 13:33:03,999 | INFO     | all workflow threads have been joined
[2025-11-25 08:33:05] 2025-11-25 13:33:03,999 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 08:33:05] 2025-11-25 13:33:04,000 | INFO     | traces error code: 0
[2025-11-25 08:33:05] 2025-11-25 13:33:04,000 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 08:33:05] 2025-11-25 13:33:04,607 [wrapper] ==== pilot stdout END ====
[2025-11-25 08:33:05] 2025-11-25 13:33:04,644 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 08:33:05] 2025-11-25 13:33:04,683 [wrapper] pilotpid: 3951823
[2025-11-25 08:33:05] 2025-11-25 13:33:04,698 [wrapper] Pilot exit status: 0
[2025-11-25 08:33:05] 2025-11-25 13:33:04,802 [wrapper] pandaids: 6895355111
[2025-11-25 08:33:05] 2025-11-25 13:33:05,007 [wrapper] cleanup supervisor_pilot  870533 3951824
[2025-11-25 08:33:05] 2025-11-25 13:33:05,037 [wrapper] Test setup, not cleaning
[2025-11-25 08:33:05] 2025-11-25 13:33:05,054 [wrapper] apfmon messages muted
[2025-11-25 08:33:05] 2025-11-25 13:33:05,085 [wrapper] ==== wrapper stdout END ====
[2025-11-25 08:33:05] 2025-11-25 13:33:05,129 [wrapper] ==== wrapper stderr END ====
[2025-11-25 08:33:05]  *** Error codes and diagnostics ***
[2025-11-25 08:33:05]     "exeErrorCode": 0,
[2025-11-25 08:33:05]     "exeErrorDiag": "",
[2025-11-25 08:33:05]     "pilotErrorCode": 0,
[2025-11-25 08:33:05]     "pilotErrorDiag": "",
[2025-11-25 08:33:05]  *** Listing of results directory ***
[2025-11-25 08:33:05] total 1333188
[2025-11-25 08:33:05] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 00:47 pilot3.tar.gz
[2025-11-25 08:33:05] -rwx------. 1 boincer umatlas     36292 Nov 23 00:58 runpilot2-wrapper.sh
[2025-11-25 08:33:05] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 00:58 queuedata.json
[2025-11-25 08:33:05] -rw-r--r--. 1 boincer umatlas       100 Nov 24 00:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 08:33:05] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 00:00 run_atlas
[2025-11-25 08:33:05] -rw-r--r--. 1 boincer umatlas       105 Nov 24 00:00 job.xml
[2025-11-25 08:33:05] -rw-r--r--. 2 boincer umatlas 407263094 Nov 24 00:00 EVNT.47483658._001143.pool.root.1
[2025-11-25 08:33:05] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 00:00 start_atlas.sh
[2025-11-25 08:33:05] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 00:00 shared
[2025-11-25 08:33:05] -rw-r--r--. 2 boincer umatlas    590101 Nov 24 00:00 input.tar.gz
[2025-11-25 08:33:05] -rw-r--r--. 1 boincer umatlas         0 Nov 24 00:00 boinc_lockfile
[2025-11-25 08:33:05] -rw-r--r--. 1 boincer umatlas      2785 Nov 24 00:00 pandaJob.out
[2025-11-25 08:33:05] -rw-------. 1 boincer umatlas        57 Nov 24 00:00 setup.sh.local
[2025-11-25 08:33:05] -rw-------. 1 boincer umatlas    989786 Nov 24 00:02 agis_schedconf.cvmfs.json
[2025-11-25 08:33:05] drwx------. 5 boincer umatlas      4096 Nov 24 00:02 pilot3
[2025-11-25 08:33:05] -rw-r--r--. 1 boincer umatlas       533 Nov 25 07:19 boinc_task_state.xml
[2025-11-25 08:33:05] -rw-------. 1 boincer umatlas 919181109 Nov 25 08:29 HITS.47556149._001296.pool.root.1
[2025-11-25 08:33:05] -rw-r--r--. 1 boincer umatlas      6841 Nov 25 08:29 init_data.xml
[2025-11-25 08:33:05] -rw-------. 1 boincer umatlas      1072 Nov 25 08:31 memory_monitor_summary.json
[2025-11-25 08:33:05] -rw-------. 1 boincer umatlas   1516240 Nov 25 08:31 agis_ddmendpoints.agis.ALL.json
[2025-11-25 08:33:05] -rw-------. 1 boincer umatlas   2921752 Nov 25 08:31 log.47556149._001296.job.log.tgz.1
[2025-11-25 08:33:05] -rw-------. 1 boincer umatlas      8655 Nov 25 08:32 heartbeat.json
[2025-11-25 08:33:05] -rw-------. 1 boincer umatlas        95 Nov 25 08:32 pilot_heartbeat.json
[2025-11-25 08:33:05] -rw-------. 1 boincer umatlas      4824 Nov 25 08:33 pilotlog.txt
[2025-11-25 08:33:05] -rw-------. 1 boincer umatlas  14489951 Nov 25 08:33 log.47556149._001296.job.log.1
[2025-11-25 08:33:05] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 08:33 boinc_mmap_file
[2025-11-25 08:33:05] -rw-------. 1 boincer umatlas       353 Nov 25 08:33 output.list
[2025-11-25 08:33:05] -rw-r--r--. 1 boincer umatlas       620 Nov 25 08:33 runtime_log
[2025-11-25 08:33:05] -rw-------. 1 boincer umatlas  17428480 Nov 25 08:33 result.tar.gz
[2025-11-25 08:33:05] -rw-r--r--. 1 boincer umatlas        29 Nov 25 08:33 wrapper_checkpoint.txt
[2025-11-25 08:33:05] -rw-r--r--. 1 boincer umatlas      9344 Nov 25 08:33 runtime_log.err
[2025-11-25 08:33:05] -rw-------. 1 boincer umatlas       668 Nov 25 08:33 IfQNDmNIIh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm4gKKDmGlrN1m.diag
[2025-11-25 08:33:05] -rw-r--r--. 1 boincer umatlas     21874 Nov 25 08:33 stderr.txt
[2025-11-25 08:33:06] HITS file was successfully produced:
[2025-11-25 08:33:06] -rw-------. 1 boincer umatlas 919181109 Nov 25 08:29 shared/HITS.pool.root.1
[2025-11-25 08:33:06]  *** Contents of shared directory: ***
[2025-11-25 08:33:06] total 1312984
[2025-11-25 08:33:06] -rw-r--r--. 2 boincer umatlas 407263094 Nov 24 00:00 ATLAS.root_0
[2025-11-25 08:33:06] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 00:00 start_atlas.sh
[2025-11-25 08:33:06] -rw-r--r--. 2 boincer umatlas    590101 Nov 24 00:00 input.tar.gz
[2025-11-25 08:33:06] -rw-------. 1 boincer umatlas 919181109 Nov 25 08:29 HITS.pool.root.1
[2025-11-25 08:33:06] -rw-------. 1 boincer umatlas  17428480 Nov 25 08:33 result.tar.gz
08:33:07 (3941626): run_atlas exited; CPU time 251745.921469
08:33:07 (3941626): called boinc_finish(0)

</stderr_txt>
]]>

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