Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
13:30:34 (2373915): wrapper (7.7.26015): starting
13:30:34 (2373915): wrapper: running run_atlas (--nthreads 4)
[2025-11-26 13:30:34] Arguments: --nthreads 4
[2025-11-26 13:30:34] Threads: 4
[2025-11-26 13:30:34] Checking for CVMFS
[2025-11-26 13:30:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 13:30:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 13:30:34] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 13:30:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 13:30:34] 2.9.2.0 895933 10223 89684 153322 3 81 31573471 36864000 0 130560 1 4064629 99.979 345092 490 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-26 13:30:34] CVMFS is ok
[2025-11-26 13:30:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 13:30:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 13:30:34] Further information can be found at the LHC@home message board.
[2025-11-26 13:30:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 13:30:34] Checking for apptainer binary...
[2025-11-26 13:30:34] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 13:30:34] Running /usr/bin/apptainer --version
[2025-11-26 13:30:34] apptainer version 1.4.1-1.1
[2025-11-26 13:30:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 13:30:34] thA381
[2025-11-26 13:30:34] apptainer works
[2025-11-26 13:30:35] Set ATHENA_PROC_NUMBER=4
[2025-11-26 13:30:35] Set ATHENA_CORE_NUMBER=4
[2025-11-26 13:30:35] Starting ATLAS job with PandaID=6895354859
[2025-11-26 13:30:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 21:14:27]  *** The last 200 lines of the pilot log: ***
[2025-11-26 21:14:27] 2025-11-26 20:13:39,722 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 21:14:27] 2025-11-26 20:13:39,722 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 21:14:27] 2025-11-26 20:13:39,722 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 21:14:27] 2025-11-26 20:13:39,722 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 21:14:27] 2025-11-26 20:13:39,722 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 21:14:27] 2025-11-26 20:13:39,722 | INFO     | job 6895354859 has completed (purged errors)
[2025-11-26 21:14:27] 2025-11-26 20:13:39,722 | INFO     | overall cleanup function is called
[2025-11-26 21:14:27] 2025-11-26 20:13:40,732 | INFO     | --- collectZombieJob: --- 10, [2384312]
[2025-11-26 21:14:27] 2025-11-26 20:13:40,733 | INFO     | zombie collector waiting for pid 2384312
[2025-11-26 21:14:27] 2025-11-26 20:13:40,733 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 21:14:27] 2025-11-26 20:13:40,733 | INFO     | collected zombie processes
[2025-11-26 21:14:27] 2025-11-26 20:13:40,733 | INFO     | will attempt to kill all subprocesses of pid=2384312
[2025-11-26 21:14:27] 2025-11-26 20:13:40,780 | INFO     | process IDs to be killed: [2384312] (in reverse order)
[2025-11-26 21:14:27] 2025-11-26 20:13:40,825 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 21:14:27] 2025-11-26 20:13:40,825 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 21:14:27] 2025-11-26 20:13:40,827 | INFO     | did not find any defunct processes belonging to 2384312
[2025-11-26 21:14:27] 2025-11-26 20:13:40,828 | INFO     | did not find any defunct processes belonging to 2384312
[2025-11-26 21:14:27] 2025-11-26 20:13:40,829 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 21:14:27] 2025-11-26 20:13:40,829 | INFO     | ready for new job
[2025-11-26 21:14:27] 2025-11-26 20:13:40,829 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 21:14:27] 2025-11-26 20:13:40,831 | INFO     | ***************************************
[2025-11-26 21:14:27] 2025-11-26 20:13:40,831 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 21:14:27] 2025-11-26 20:13:40,831 | INFO     | ***************************************
[2025-11-26 21:14:27] 2025-11-26 20:13:40,831 | INFO     | 
[2025-11-26 21:14:27] 2025-11-26 20:13:40,832 | INFO     | architecture information:
[2025-11-26 21:14:27] 2025-11-26 20:13:40,832 | INFO     | executing command: cat /etc/os-release
[2025-11-26 21:14:27] 2025-11-26 20:13:40,853 | INFO     | cat /etc/os-release:
[2025-11-26 21:14:27] NAME="CentOS Linux"
[2025-11-26 21:14:27] VERSION="7 (Core)"
[2025-11-26 21:14:27] ID="centos"
[2025-11-26 21:14:27] ID_LIKE="rhel fedora"
[2025-11-26 21:14:27] VERSION_ID="7"
[2025-11-26 21:14:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 21:14:27] ANSI_COLOR="0;31"
[2025-11-26 21:14:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 21:14:27] HOME_URL="https://www.centos.org/"
[2025-11-26 21:14:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 21:14:27] 
[2025-11-26 21:14:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 21:14:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 21:14:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 21:14:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 21:14:27] 
[2025-11-26 21:14:27] 2025-11-26 20:13:40,853 | INFO     | ***************************************
[2025-11-26 21:14:27] 2025-11-26 20:13:41,356 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-26 21:14:27] 2025-11-26 20:13:41,376 | INFO     | sufficient remaining disk space (224325009408 B)
[2025-11-26 21:14:27] 2025-11-26 20:13:41,376 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 21:14:27] 2025-11-26 20:13:41,377 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 21:14:27] 2025-11-26 20:13:41,377 | INFO     | update_server=False
[2025-11-26 21:14:27] 2025-11-26 20:13:41,377 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 21:14:27] 2025-11-26 20:13:41,377 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 21:14:27] 2025-11-26 20:13:41,377 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 21:14:27] 2025-11-26 20:13:41,377 | INFO     | aborting loop
[2025-11-26 21:14:27] 2025-11-26 20:13:41,508 | INFO     | all payload control threads have been joined
[2025-11-26 21:14:27] 2025-11-26 20:13:41,605 | INFO     | all data control threads have been joined
[2025-11-26 21:14:27] 2025-11-26 20:13:42,182 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 21:14:27] 2025-11-26 20:13:42,379 | INFO     | [job] job monitor thread has finished
[2025-11-26 21:14:27] 2025-11-26 20:13:42,382 | INFO     | [job] retrieve thread has finished
[2025-11-26 21:14:27] 2025-11-26 20:13:42,382 | INFO     | [job] queue monitor thread has finished
[2025-11-26 21:14:27] 2025-11-26 20:13:42,466 | INFO     | [payload] validate_post thread has finished
[2025-11-26 21:14:27] 2025-11-26 20:13:42,514 | INFO     | [payload] control thread has finished
[2025-11-26 21:14:27] 2025-11-26 20:13:42,610 | INFO     | [data] control thread has finished
[2025-11-26 21:14:27] 2025-11-26 20:13:42,712 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 21:14:27] 2025-11-26 20:13:42,715 | INFO     | all job control threads have been joined
[2025-11-26 21:14:27] 2025-11-26 20:13:42,771 | INFO     | [job] validate thread has finished
[2025-11-26 21:14:27] 2025-11-26 20:13:43,049 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 21:14:27] 2025-11-26 20:13:43,103 | INFO     | [data] copytool_in thread has finished
[2025-11-26 21:14:27] 2025-11-26 20:13:43,291 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 21:14:27] 2025-11-26 20:13:43,307 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 21:14:27] 2025-11-26 20:13:43,393 | INFO     | [payload] failed_post thread has finished
[2025-11-26 21:14:27] 2025-11-26 20:13:43,720 | INFO     | [job] control thread has finished
[2025-11-26 21:14:27] 2025-11-26 20:13:44,188 | INFO     | [data] copytool_out thread has finished
[2025-11-26 21:14:27] 2025-11-26 20:13:44,762 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 21:14:27] 2025-11-26 20:13:48,767 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 21:14:27] 2025-11-26 20:14:11,492 | INFO     | PID=2377717 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 21:14:27] 2025-11-26 20:14:11,492 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 21:14:27] 2025-11-26 20:14:11,492 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 21:14:27] 2025-11-26 20:14:11,492 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 21:14:27] 2025-11-26 20:14:20,454 | INFO     | [monitor] cgroup control has ended
[2025-11-26 21:14:27] 2025-11-26 20:14:22,407 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139706757592896)>', '<ExcThread(monitor, started 139705681176320)>']
[2025-11-26 21:14:27] 2025-11-26 20:14:22,546 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 21:14:27] 2025-11-26 20:14:22,546 | INFO     | [monitor] control thread has ended
[2025-11-26 21:14:27] 2025-11-26 20:14:27,410 | INFO     | all workflow threads have been joined
[2025-11-26 21:14:27] 2025-11-26 20:14:27,411 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 21:14:27] 2025-11-26 20:14:27,411 | INFO     | traces error code: 0
[2025-11-26 21:14:27] 2025-11-26 20:14:27,411 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 21:14:27] 2025-11-26 20:14:27,546 [wrapper] ==== pilot stdout END ====
[2025-11-26 21:14:27] 2025-11-26 20:14:27,552 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 21:14:27] 2025-11-26 20:14:27,558 [wrapper] pilotpid: 2377717
[2025-11-26 21:14:27] 2025-11-26 20:14:27,563 [wrapper] Pilot exit status: 0
[2025-11-26 21:14:27] 2025-11-26 20:14:27,577 [wrapper] pandaids: 6895354859
[2025-11-26 21:14:27] 2025-11-26 20:14:27,606 [wrapper] cleanup supervisor_pilot 2434430 2377718
[2025-11-26 21:14:27] 2025-11-26 20:14:27,612 [wrapper] Test setup, not cleaning
[2025-11-26 21:14:27] 2025-11-26 20:14:27,617 [wrapper] apfmon messages muted
[2025-11-26 21:14:27] 2025-11-26 20:14:27,621 [wrapper] ==== wrapper stdout END ====
[2025-11-26 21:14:27] 2025-11-26 20:14:27,626 [wrapper] ==== wrapper stderr END ====
[2025-11-26 21:14:27]  *** Error codes and diagnostics ***
[2025-11-26 21:14:27]     "exeErrorCode": 0,
[2025-11-26 21:14:27]     "exeErrorDiag": "",
[2025-11-26 21:14:27]     "pilotErrorCode": 0,
[2025-11-26 21:14:27]     "pilotErrorDiag": "",
[2025-11-26 21:14:27]  *** Listing of results directory ***
[2025-11-26 21:14:27] total 1322332
[2025-11-26 21:14:27] -rw-r--r-- 1 boinc boinc    576529 Nov 23 06:21 pilot3.tar.gz
[2025-11-26 21:14:27] -rw-r--r-- 1 boinc boinc      5112 Nov 23 06:42 queuedata.json
[2025-11-26 21:14:27] -rwx------ 1 boinc boinc     36292 Nov 23 06:43 runpilot2-wrapper.sh
[2025-11-26 21:14:27] -rw-r--r-- 1 boinc boinc       100 Nov 26 13:30 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 21:14:27] -rwxr-xr-x 1 boinc boinc      7986 Nov 26 13:30 run_atlas
[2025-11-26 21:14:27] -rw-r--r-- 1 boinc boinc       105 Nov 26 13:30 job.xml
[2025-11-26 21:14:27] -rw-r--r-- 2 boinc boinc 410036763 Nov 26 13:30 EVNT.47483658._001142.pool.root.1
[2025-11-26 21:14:27] -rw-r--r-- 2 boinc boinc    590102 Nov 26 13:30 input.tar.gz
[2025-11-26 21:14:27] -rw-r--r-- 2 boinc boinc     15847 Nov 26 13:30 start_atlas.sh
[2025-11-26 21:14:27] drwxrwx--x 2 boinc boinc      4096 Nov 26 13:30 shared
[2025-11-26 21:14:27] -rw-r--r-- 1 boinc boinc         0 Nov 26 13:30 boinc_setup_complete
[2025-11-26 21:14:27] -rw-r--r-- 1 boinc boinc      6376 Nov 26 13:30 init_data.xml
[2025-11-26 21:14:27] -rw-r--r-- 1 boinc boinc         0 Nov 26 13:30 boinc_lockfile
[2025-11-26 21:14:27] -rw-r--r-- 1 boinc boinc      2784 Nov 26 13:30 pandaJob.out
[2025-11-26 21:14:27] -rw------- 1 boinc boinc    991830 Nov 26 13:30 agis_schedconf.cvmfs.json
[2025-11-26 21:14:27] drwx------ 5 boinc boinc      4096 Nov 26 13:30 pilot3
[2025-11-26 21:14:27] -rw-r--r-- 1 boinc boinc       533 Nov 26 21:07 boinc_task_state.xml
[2025-11-26 21:14:27] -rw------- 1 boinc boinc 929703127 Nov 26 21:13 HITS.47556149._001290.pool.root.1
[2025-11-26 21:14:27] -rw------- 1 boinc boinc      1028 Nov 26 21:13 memory_monitor_summary.json
[2025-11-26 21:14:27] -rw------- 1 boinc boinc   1516240 Nov 26 21:13 agis_ddmendpoints.agis.ALL.json
[2025-11-26 21:14:27] -rw------- 1 boinc boinc        95 Nov 26 21:13 pilot_heartbeat.json
[2025-11-26 21:14:27] -rw------- 1 boinc boinc   1301867 Nov 26 21:13 log.47556149._001290.job.log.tgz.1
[2025-11-26 21:14:27] -rw------- 1 boinc boinc      8571 Nov 26 21:13 heartbeat.json
[2025-11-26 21:14:27] -rw-r--r-- 1 boinc boinc        29 Nov 26 21:14 wrapper_checkpoint.txt
[2025-11-26 21:14:27] -rw-r--r-- 1 boinc boinc      8192 Nov 26 21:14 boinc_mmap_file
[2025-11-26 21:14:27] -rw------- 1 boinc boinc      4752 Nov 26 21:14 pilotlog.txt
[2025-11-26 21:14:27] -rw------- 1 boinc boinc   3907288 Nov 26 21:14 log.47556149._001290.job.log.1
[2025-11-26 21:14:27] -rw------- 1 boinc boinc       353 Nov 26 21:14 output.list
[2025-11-26 21:14:27] -rw-r--r-- 1 boinc boinc       620 Nov 26 21:14 runtime_log
[2025-11-26 21:14:27] -rw------- 1 boinc boinc   5232640 Nov 26 21:14 result.tar.gz
[2025-11-26 21:14:27] -rw-r--r-- 1 boinc boinc      8898 Nov 26 21:14 runtime_log.err
[2025-11-26 21:14:27] -rw------- 1 boinc boinc       666 Nov 26 21:14 QShKDmZ3Hh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmUgKKDmS29b4m.diag
[2025-11-26 21:14:27] -rw-r--r-- 1 boinc boinc     11538 Nov 26 21:14 stderr.txt
[2025-11-26 21:14:27] HITS file was successfully produced:
[2025-11-26 21:14:27] -rw------- 1 boinc boinc 929703127 Nov 26 21:13 shared/HITS.pool.root.1
[2025-11-26 21:14:27]  *** Contents of shared directory: ***
[2025-11-26 21:14:27] total 1314060
[2025-11-26 21:14:27] -rw-r--r-- 2 boinc boinc 410036763 Nov 26 13:30 ATLAS.root_0
[2025-11-26 21:14:27] -rw-r--r-- 2 boinc boinc    590102 Nov 26 13:30 input.tar.gz
[2025-11-26 21:14:27] -rw-r--r-- 2 boinc boinc     15847 Nov 26 13:30 start_atlas.sh
[2025-11-26 21:14:27] -rw------- 1 boinc boinc 929703127 Nov 26 21:13 HITS.pool.root.1
[2025-11-26 21:14:27] -rw------- 1 boinc boinc   5232640 Nov 26 21:14 result.tar.gz
21:14:29 (2373915): run_atlas exited; CPU time 108637.119505
21:14:29 (2373915): called boinc_finish(0)

</stderr_txt>
]]>

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