Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
22:08:11 (583246): wrapper (7.7.26015): starting
22:08:11 (583246): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 22:08:11] Arguments: --nthreads 8
[2025-11-23 22:08:11] Threads: 8
[2025-11-23 22:08:11] Checking for CVMFS
[2025-11-23 22:08:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 22:08:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 22:08:12] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 22:08:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 22:08:13] 2.13.2.0 10481 30963 299912 153230 1 136 34696422 40960001 19597 16776704 0 57069196 99.777 33772454 33906 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-23 22:08:13] CVMFS is ok
[2025-11-23 22:08:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 22:08:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 22:08:13] Further information can be found at the LHC@home message board.
[2025-11-23 22:08:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 22:08:13] Checking for apptainer binary...
[2025-11-23 22:08:13] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 22:08:13] Running /usr/bin/apptainer --version
[2025-11-23 22:08:13] apptainer version 1.4.4-1.el9
[2025-11-23 22:08:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 22:08:14] c-211-35-3.aglt2.org
[2025-11-23 22:08:14] apptainer works
[2025-11-23 22:08:14] Set ATHENA_PROC_NUMBER=8
[2025-11-23 22:08:14] Set ATHENA_CORE_NUMBER=8
[2025-11-23 22:08:14] Starting ATLAS job with PandaID=6895353874
[2025-11-23 22:08:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 12:11:08]  *** The last 200 lines of the pilot log: ***
[2025-11-25 12:11:08] 2025-11-25 17:10:18,814 | INFO     | time since job start (136858s) is within the limit (172800.0s)
[2025-11-25 12:11:08] 2025-11-25 17:10:19,123 | INFO     | monitor loop #7666: job 0:6895353874 is in state 'finished'
[2025-11-25 12:11:08] 2025-11-25 17:10:19,123 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 12:11:08] 2025-11-25 17:10:20,821 | INFO     | time since job start (136860s) is within the limit (172800.0s)
[2025-11-25 12:11:08] 2025-11-25 17:10:21,630 | INFO     | monitor loop #7667: job 0:6895353874 is in state 'finished'
[2025-11-25 12:11:08] 2025-11-25 17:10:21,630 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 12:11:08] 2025-11-25 17:10:22,828 | INFO     | time since job start (136862s) is within the limit (172800.0s)
[2025-11-25 12:11:08] 2025-11-25 17:10:24,153 | INFO     | monitor loop #7668: job 0:6895353874 is in state 'finished'
[2025-11-25 12:11:08] 2025-11-25 17:10:24,153 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 12:11:08] 2025-11-25 17:10:24,860 | INFO     | time since job start (136864s) is within the limit (172800.0s)
[2025-11-25 12:11:08] 2025-11-25 17:10:26,476 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-25 12:11:08] 2025-11-25 17:10:26,501 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2607.693947916667
[2025-11-25 12:11:08] 2025-11-25 17:10:26,533 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895353874/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 12:11:08] 2025-11-25 17:10:26,538 | INFO     | extracted standard info from prmon json
[2025-11-25 12:11:08] 2025-11-25 17:10:26,538 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 12:11:08] 2025-11-25 17:10:26,538 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 12:11:08] 2025-11-25 17:10:26,606 | INFO     | fitting pss+swap vs Time
[2025-11-25 12:11:08] 2025-11-25 17:10:26,613 | INFO     | sum of square deviations: 3489476830949.696
[2025-11-25 12:11:08] 2025-11-25 17:10:26,825 | INFO     | monitor loop #7669: job 0:6895353874 is in state 'finished'
[2025-11-25 12:11:08] 2025-11-25 17:10:26,825 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 12:11:08] 2025-11-25 17:10:26,842 | INFO     | sum of deviations: 6990778191271.813
[2025-11-25 12:11:08] 2025-11-25 17:10:26,843 | INFO     | mean x: 1764022212.2989736
[2025-11-25 12:11:08] 2025-11-25 17:10:26,843 | INFO     | mean y: 2945855.0017849174
[2025-11-25 12:11:08] 2025-11-25 17:10:26,843 | INFO     | intersect: -3531076179.8436146
[2025-11-25 12:11:08] 2025-11-25 17:10:26,845 | INFO     | chi2: 17.882659739660518
[2025-11-25 12:11:08] 2025-11-25 17:10:26,852 | INFO     | sum of square deviations: 3466173305462.2163
[2025-11-25 12:11:08] 2025-11-25 17:10:26,952 | INFO     | time since job start (136866s) is within the limit (172800.0s)
[2025-11-25 12:11:08] 2025-11-25 17:10:27,057 | INFO     | sum of deviations: 7774553015284.12
[2025-11-25 12:11:08] 2025-11-25 17:10:27,057 | INFO     | mean x: 1764022059.8099284
[2025-11-25 12:11:08] 2025-11-25 17:10:27,057 | INFO     | mean y: 2950983.247316637
[2025-11-25 12:11:08] 2025-11-25 17:10:27,057 | INFO     | intersect: -3953712984.624927
[2025-11-25 12:11:08] 2025-11-25 17:10:27,064 | INFO     | chi2: 14.581556548213872
[2025-11-25 12:11:08] 2025-11-25 17:10:27,064 | INFO     | current chi2=14.581556548213872 (change=18.459799825667957 %)
[2025-11-25 12:11:08] 2025-11-25 17:10:27,064 | INFO     | right removable region: 2235
[2025-11-25 12:11:08] 2025-11-25 17:10:27,067 | INFO     | sum of square deviations: 3466166471439.6
[2025-11-25 12:11:08] 2025-11-25 17:10:27,224 | INFO     | sum of deviations: 6195408803211.815
[2025-11-25 12:11:08] 2025-11-25 17:10:27,224 | INFO     | mean x: 1764022364.8103757
[2025-11-25 12:11:08] 2025-11-25 17:10:27,225 | INFO     | mean y: 2951057.879248658
[2025-11-25 12:11:08] 2025-11-25 17:10:27,225 | INFO     | intersect: -3150053790.000911
[2025-11-25 12:11:08] 2025-11-25 17:10:27,227 | INFO     | chi2: 14.8144086706037
[2025-11-25 12:11:08] 2025-11-25 17:10:27,227 | INFO     | current chi2=14.8144086706037 (change=17.157688586178203 %)
[2025-11-25 12:11:08] 2025-11-25 17:10:27,228 | INFO     | left removable region: 10
[2025-11-25 12:11:08] 2025-11-25 17:10:27,230 | INFO     | sum of square deviations: 3415258375064.227
[2025-11-25 12:11:08] 2025-11-25 17:10:27,414 | INFO     | sum of deviations: 6782804507002.965
[2025-11-25 12:11:08] 2025-11-25 17:10:27,415 | INFO     | mean x: 1764022334.3330338
[2025-11-25 12:11:08] 2025-11-25 17:10:27,415 | INFO     | mean y: 2959468.9460674156
[2025-11-25 12:11:08] 2025-11-25 17:10:27,415 | INFO     | intersect: -3500441248.0034895
[2025-11-25 12:11:08] 2025-11-25 17:10:27,421 | INFO     | chi2: 10.34445705496709
[2025-11-25 12:11:08] 2025-11-25 17:10:27,422 | INFO     | current memory leak: 1.99 B/s (using 2225 data points, chi2=10.34)
[2025-11-25 12:11:08] 2025-11-25 17:10:27,424 | INFO     | could have reported an average CPU frequency of 2581 MHz (78 samples)
[2025-11-25 12:11:08] 2025-11-25 17:10:27,428 | INFO     | ..............................
[2025-11-25 12:11:08] 2025-11-25 17:10:27,428 | INFO     | . Timing measurements:
[2025-11-25 12:11:08] 2025-11-25 17:10:27,428 | INFO     | . get job = 0 s
[2025-11-25 12:11:08] 2025-11-25 17:10:27,428 | INFO     | . initial setup = 4 s
[2025-11-25 12:11:08] 2025-11-25 17:10:27,428 | INFO     | . payload setup = 38 s
[2025-11-25 12:11:08] 2025-11-25 17:10:27,429 | INFO     | . stage-in = 0 s
[2025-11-25 12:11:08] 2025-11-25 17:10:27,429 | INFO     | . payload execution = 136715 s
[2025-11-25 12:11:08] 2025-11-25 17:10:27,429 | INFO     | . stage-out = 13 s
[2025-11-25 12:11:08] 2025-11-25 17:10:27,429 | INFO     | . log creation = 6 s
[2025-11-25 12:11:08] 2025-11-25 17:10:27,429 | INFO     | ..............................
[2025-11-25 12:11:08] 2025-11-25 17:10:27,713 | INFO     | 
[2025-11-25 12:11:08] 2025-11-25 17:10:27,713 | INFO     | job summary report
[2025-11-25 12:11:08] 2025-11-25 17:10:27,713 | INFO     | --------------------------------------------------
[2025-11-25 12:11:08] 2025-11-25 17:10:27,713 | INFO     | PanDA job id: 6895353874
[2025-11-25 12:11:08] 2025-11-25 17:10:27,714 | INFO     | task id: 47556149
[2025-11-25 12:11:08] 2025-11-25 17:10:27,714 | INFO     | errors: (none)
[2025-11-25 12:11:08] 2025-11-25 17:10:27,714 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 12:11:08] 2025-11-25 17:10:27,714 | INFO     | pilot state: finished 
[2025-11-25 12:11:08] 2025-11-25 17:10:27,714 | INFO     | transexitcode: 0
[2025-11-25 12:11:08] 2025-11-25 17:10:27,714 | INFO     | exeerrorcode: 0
[2025-11-25 12:11:08] 2025-11-25 17:10:27,714 | INFO     | exeerrordiag: 
[2025-11-25 12:11:08] 2025-11-25 17:10:27,714 | INFO     | exitcode: 0
[2025-11-25 12:11:08] 2025-11-25 17:10:27,714 | INFO     | exitmsg: OK
[2025-11-25 12:11:08] 2025-11-25 17:10:27,714 | INFO     | cpuconsumptiontime: 273377 s
[2025-11-25 12:11:08] 2025-11-25 17:10:27,714 | INFO     | nevents: 1000
[2025-11-25 12:11:08] 2025-11-25 17:10:27,714 | INFO     | neventsw: 0
[2025-11-25 12:11:08] 2025-11-25 17:10:27,714 | INFO     | pid: 596091
[2025-11-25 12:11:08] 2025-11-25 17:10:27,714 | INFO     | pgrp: 596091
[2025-11-25 12:11:08] 2025-11-25 17:10:27,715 | INFO     | corecount: 8
[2025-11-25 12:11:08] 2025-11-25 17:10:27,715 | INFO     | event service: False
[2025-11-25 12:11:08] 2025-11-25 17:10:27,715 | INFO     | sizes: {0: 2298584, 1: 2298783, 12: 2298783, 23: 2298811, 31: 2299101, 34: 2299129, 136756: 2386636, 136770: 2396482, 136806: 2396672}
[2025-11-25 12:11:08] 2025-11-25 17:10:27,715 | INFO     | --------------------------------------------------
[2025-11-25 12:11:08] 2025-11-25 17:10:27,715 | INFO     | 
[2025-11-25 12:11:08] 2025-11-25 17:10:27,715 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-25 12:11:08] 2025-11-25 17:10:27,777 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 12:11:08] 2025-11-25 17:10:27,778 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 12:11:08] 2025-11-25 17:10:27,778 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 12:11:08] 2025-11-25 17:10:27,778 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 12:11:08] 2025-11-25 17:10:27,778 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 12:11:08] 2025-11-25 17:10:27,778 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 12:11:08] 2025-11-25 17:10:27,778 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 12:11:08] 2025-11-25 17:10:27,778 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 12:11:08] 2025-11-25 17:10:27,778 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 12:11:08] 2025-11-25 17:10:27,778 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 12:11:08] 2025-11-25 17:10:27,778 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 12:11:08] 2025-11-25 17:10:27,778 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 12:11:08] 2025-11-25 17:10:27,778 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 12:11:08] 2025-11-25 17:10:27,778 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 12:11:08] 2025-11-25 17:10:27,778 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 12:11:08] 2025-11-25 17:10:27,779 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 12:11:08] 2025-11-25 17:10:27,779 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 12:11:08] 2025-11-25 17:10:27,779 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 12:11:08] 2025-11-25 17:10:27,779 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 12:11:08] 2025-11-25 17:10:27,779 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 12:11:08] 2025-11-25 17:10:27,779 | INFO     | job 6895353874 has completed (purged errors)
[2025-11-25 12:11:08] 2025-11-25 17:10:27,779 | INFO     | overall cleanup function is called
[2025-11-25 12:11:08] 2025-11-25 17:10:28,824 | INFO     | --- collectZombieJob: --- 10, [596091]
[2025-11-25 12:11:08] 2025-11-25 17:10:28,824 | INFO     | zombie collector waiting for pid 596091
[2025-11-25 12:11:08] 2025-11-25 17:10:28,824 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 12:11:08] 2025-11-25 17:10:28,824 | INFO     | collected zombie processes
[2025-11-25 12:11:08] 2025-11-25 17:10:28,825 | INFO     | will attempt to kill all subprocesses of pid=596091
[2025-11-25 12:11:08] 2025-11-25 17:10:30,079 | INFO     | PID=587108 has CPU usage=5.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-25 12:11:08] 2025-11-25 17:10:30,079 | INFO     | .. there are 17 such processes running
[2025-11-25 12:11:08] 2025-11-25 17:10:30,270 | INFO     | process IDs to be killed: [596091] (in reverse order)
[2025-11-25 12:11:08] 2025-11-25 17:10:30,522 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 12:11:08] 2025-11-25 17:10:30,523 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 12:11:08] 2025-11-25 17:10:30,597 | INFO     | did not find any defunct processes belonging to 596091
[2025-11-25 12:11:08] 2025-11-25 17:10:30,664 | INFO     | did not find any defunct processes belonging to 596091
[2025-11-25 12:11:08] 2025-11-25 17:10:30,669 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 12:11:08] 2025-11-25 17:10:30,669 | INFO     | ready for new job
[2025-11-25 12:11:08] 2025-11-25 17:10:30,669 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 12:11:08] 2025-11-25 17:10:30,687 | INFO     | ***************************************
[2025-11-25 12:11:08] 2025-11-25 17:10:30,687 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 12:11:08] 2025-11-25 17:10:30,687 | INFO     | ***************************************
[2025-11-25 12:11:08] 2025-11-25 17:10:30,687 | INFO     | 
[2025-11-25 12:11:08] 2025-11-25 17:10:30,701 | INFO     | architecture information:
[2025-11-25 12:11:08] 2025-11-25 17:10:30,701 | INFO     | executing command: cat /etc/os-release
[2025-11-25 12:11:08] 2025-11-25 17:10:30,776 | INFO     | cat /etc/os-release:
[2025-11-25 12:11:08] NAME="CentOS Linux"
[2025-11-25 12:11:08] VERSION="7 (Core)"
[2025-11-25 12:11:08] ID="centos"
[2025-11-25 12:11:08] ID_LIKE="rhel fedora"
[2025-11-25 12:11:08] VERSION_ID="7"
[2025-11-25 12:11:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 12:11:08] ANSI_COLOR="0;31"
[2025-11-25 12:11:08] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 12:11:08] HOME_URL="https://www.centos.org/"
[2025-11-25 12:11:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 12:11:08] 
[2025-11-25 12:11:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 12:11:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 12:11:08] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 12:11:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 12:11:08] 
[2025-11-25 12:11:08] 2025-11-25 17:10:30,777 | INFO     | ***************************************
[2025-11-25 12:11:08] 2025-11-25 17:10:31,281 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-25 12:11:08] 2025-11-25 17:10:31,386 | INFO     | sufficient remaining disk space (124426125312 B)
[2025-11-25 12:11:08] 2025-11-25 17:10:31,387 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 12:11:08] 2025-11-25 17:10:31,387 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 12:11:08] 2025-11-25 17:10:31,387 | INFO     | update_server=False
[2025-11-25 12:11:08] 2025-11-25 17:10:31,387 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 12:11:08] 2025-11-25 17:10:31,394 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 12:11:08] 2025-11-25 17:10:31,623 | INFO     | all payload control threads have been joined
[2025-11-25 12:11:08] 2025-11-25 17:10:31,844 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-25 12:11:08] 2025-11-25 17:10:31,844 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-25 12:11:08] 2025-11-25 17:10:31,844 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 12:11:08] 2025-11-25 17:10:31,844 | INFO     | will abort loop
[2025-11-25 12:11:08] 2025-11-25 17:10:32,043 | INFO     | all data control threads have been joined
[2025-11-25 12:11:08] 2025-11-25 17:10:32,393 | INFO     | [job] retrieve thread has finished
[2025-11-25 12:11:08] 2025-11-25 17:10:32,448 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 12:11:08] 2025-11-25 17:10:32,524 | INFO     | [job] validate thread has finished
[2025-11-25 12:11:08] 2025-11-25 17:10:32,628 | INFO     | [payload] control thread has finished
[2025-11-25 12:11:08] 2025-11-25 17:10:32,826 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 12:11:08] 2025-11-25 17:10:32,850 | INFO     | [job] job monitor thread has finished
[2025-11-25 12:11:08] 2025-11-25 17:10:32,954 | INFO     | all job control threads have been joined
[2025-11-25 12:11:08] 2025-11-25 17:10:32,998 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 12:11:08] 2025-11-25 17:10:32,999 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 12:11:08] 2025-11-25 17:10:32,999 | INFO     | [data] copytool_in thread has finished
[2025-11-25 12:11:08] 2025-11-25 17:10:33,049 | INFO     | [data] control thread has finished
[2025-11-25 12:11:08] 2025-11-25 17:10:33,190 | INFO     | [payload] failed_post thread has finished
[2025-11-25 12:11:08] 2025-11-25 17:10:33,312 | INFO     | [payload] validate_post thread has finished
[2025-11-25 12:11:08] 2025-11-25 17:10:33,403 | INFO     | [data] copytool_out thread has finished
[2025-11-25 12:11:08] 2025-11-25 17:10:33,849 | INFO     | [job] queue monitor thread has finished
[2025-11-25 12:11:08] 2025-11-25 17:10:33,853 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 12:11:08] 2025-11-25 17:10:33,960 | INFO     | [job] control thread has finished
[2025-11-25 12:11:08] 2025-11-25 17:10:34,837 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 12:11:08] 2025-11-25 17:10:37,156 | INFO     | [monitor] cgroup control has ended
[2025-11-25 12:11:08] 2025-11-25 17:10:38,846 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 12:11:08] 2025-11-25 17:10:38,937 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139996878333760)>', '<ExcThread(monitor, started 139996379989760)>']
[2025-11-25 12:11:08] 2025-11-25 17:10:43,963 | INFO     | all workflow threads have been joined
[2025-11-25 12:11:08] 2025-11-25 17:10:43,963 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 12:11:08] 2025-11-25 17:10:43,963 | INFO     | traces error code: 0
[2025-11-25 12:11:08] 2025-11-25 17:10:43,964 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 12:11:08] 2025-11-25 17:11:06,362 | INFO     | PID=587108 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-25 12:11:08] 2025-11-25 17:11:06,362 | INFO     | .. there are 17 such processes running
[2025-11-25 12:11:08] 2025-11-25 17:11:06,362 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 12:11:08] 2025-11-25 17:11:06,363 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 12:11:08] 2025-11-25 17:11:06,363 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 12:11:08] 2025-11-25 17:11:06,363 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 12:11:08] 2025-11-25 17:11:06,366 | INFO     | [monitor] control thread has ended
[2025-11-25 12:11:08] 2025-11-25 17:11:06,966 [wrapper] ==== pilot stdout END ====
[2025-11-25 12:11:08] 2025-11-25 17:11:06,990 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 12:11:08] 2025-11-25 17:11:07,015 [wrapper] pilotpid: 587108
[2025-11-25 12:11:08] 2025-11-25 17:11:07,026 [wrapper] Pilot exit status: 0
[2025-11-25 12:11:08] 2025-11-25 17:11:07,115 [wrapper] pandaids: 6895353874
[2025-11-25 12:11:08] 2025-11-25 17:11:07,291 [wrapper] cleanup supervisor_pilot  719618 587109
[2025-11-25 12:11:08] 2025-11-25 17:11:07,321 [wrapper] Test setup, not cleaning
[2025-11-25 12:11:08] 2025-11-25 17:11:07,347 [wrapper] apfmon messages muted
[2025-11-25 12:11:08] 2025-11-25 17:11:07,388 [wrapper] ==== wrapper stdout END ====
[2025-11-25 12:11:08] 2025-11-25 17:11:07,395 [wrapper] ==== wrapper stderr END ====
[2025-11-25 12:11:08]  *** Error codes and diagnostics ***
[2025-11-25 12:11:08]     "exeErrorCode": 0,
[2025-11-25 12:11:08]     "exeErrorDiag": "",
[2025-11-25 12:11:08]     "pilotErrorCode": 0,
[2025-11-25 12:11:08]     "pilotErrorDiag": "",
[2025-11-25 12:11:08]  *** Listing of results directory ***
[2025-11-25 12:11:08] total 1341160
[2025-11-25 12:11:08] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 00:21 pilot3.tar.gz
[2025-11-25 12:11:08] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 00:24 queuedata.json
[2025-11-25 12:11:08] -rwx------. 1 boincer umatlas     36292 Nov 23 00:25 runpilot2-wrapper.sh
[2025-11-25 12:11:08] -rw-r--r--. 1 boincer umatlas       100 Nov 23 22:08 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 12:11:08] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 23 22:08 run_atlas
[2025-11-25 12:11:08] -rw-r--r--. 1 boincer umatlas       105 Nov 23 22:08 job.xml
[2025-11-25 12:11:08] -rw-r--r--. 2 boincer umatlas 412848764 Nov 23 22:08 EVNT.47483658._001140.pool.root.1
[2025-11-25 12:11:08] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 22:08 start_atlas.sh
[2025-11-25 12:11:08] drwxrwx--x. 2 boincer umatlas      4096 Nov 23 22:08 shared
[2025-11-25 12:11:08] -rw-r--r--. 2 boincer umatlas    590103 Nov 23 22:08 input.tar.gz
[2025-11-25 12:11:08] -rw-r--r--. 1 boincer umatlas         0 Nov 23 22:08 boinc_lockfile
[2025-11-25 12:11:08] -rw-r--r--. 1 boincer umatlas      2784 Nov 23 22:08 pandaJob.out
[2025-11-25 12:11:08] -rw-------. 1 boincer umatlas        57 Nov 23 22:08 setup.sh.local
[2025-11-25 12:11:08] -rw-------. 1 boincer umatlas    989786 Nov 23 22:09 agis_schedconf.cvmfs.json
[2025-11-25 12:11:08] drwx------. 5 boincer umatlas      4096 Nov 23 22:09 pilot3
[2025-11-25 12:11:08] -rw-r--r--. 1 boincer umatlas       534 Nov 25 11:37 boinc_task_state.xml
[2025-11-25 12:11:08] -rw-------. 1 boincer umatlas 917625098 Nov 25 12:08 HITS.47556149._001264.pool.root.1
[2025-11-25 12:11:08] -rw-------. 1 boincer umatlas      1062 Nov 25 12:09 memory_monitor_summary.json
[2025-11-25 12:11:08] -rw-------. 1 boincer umatlas   1516240 Nov 25 12:09 agis_ddmendpoints.agis.ALL.json
[2025-11-25 12:11:08] -rw-r--r--. 1 boincer umatlas      6881 Nov 25 12:09 init_data.xml
[2025-11-25 12:11:08] -rw-------. 1 boincer umatlas   2980424 Nov 25 12:09 log.47556149._001264.job.log.tgz.1
[2025-11-25 12:11:08] -rw-------. 1 boincer umatlas      8622 Nov 25 12:10 heartbeat.json
[2025-11-25 12:11:08] -rw-------. 1 boincer umatlas        95 Nov 25 12:10 pilot_heartbeat.json
[2025-11-25 12:11:08] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 12:11 boinc_mmap_file
[2025-11-25 12:11:08] -rw-r--r--. 1 boincer umatlas        30 Nov 25 12:11 wrapper_checkpoint.txt
[2025-11-25 12:11:08] -rw-------. 1 boincer umatlas       822 Nov 25 12:11 pilotlog.txt
[2025-11-25 12:11:08] -rw-------. 1 boincer umatlas  16500541 Nov 25 12:11 log.47556149._001264.job.log.1
[2025-11-25 12:11:08] -rw-------. 1 boincer umatlas       353 Nov 25 12:11 output.list
[2025-11-25 12:11:08] -rw-r--r--. 1 boincer umatlas       620 Nov 25 12:11 runtime_log
[2025-11-25 12:11:08] -rw-------. 1 boincer umatlas  19496960 Nov 25 12:11 result.tar.gz
[2025-11-25 12:11:08] -rw-r--r--. 1 boincer umatlas      9354 Nov 25 12:11 runtime_log.err
[2025-11-25 12:11:08] -rw-------. 1 boincer umatlas       665 Nov 25 12:11 1RMKDmWmHh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmdRIKDm5au77m.diag
[2025-11-25 12:11:08] -rw-r--r--. 1 boincer umatlas     21832 Nov 25 12:11 stderr.txt
[2025-11-25 12:11:08] HITS file was successfully produced:
[2025-11-25 12:11:08] -rw-------. 1 boincer umatlas 917625098 Nov 25 12:08 shared/HITS.pool.root.1
[2025-11-25 12:11:08]  *** Contents of shared directory: ***
[2025-11-25 12:11:08] total 1318940
[2025-11-25 12:11:08] -rw-r--r--. 2 boincer umatlas 412848764 Nov 23 22:08 ATLAS.root_0
[2025-11-25 12:11:08] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 22:08 start_atlas.sh
[2025-11-25 12:11:08] -rw-r--r--. 2 boincer umatlas    590103 Nov 23 22:08 input.tar.gz
[2025-11-25 12:11:08] -rw-------. 1 boincer umatlas 917625098 Nov 25 12:08 HITS.pool.root.1
[2025-11-25 12:11:08] -rw-------. 1 boincer umatlas  19496960 Nov 25 12:11 result.tar.gz
12:11:10 (583246): run_atlas exited; CPU time 277214.180872
12:11:10 (583246): called boinc_finish(0)

</stderr_txt>
]]>

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