Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:40:17 (8614): wrapper (7.7.26015): starting
14:40:17 (8614): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 14:40:17] Arguments: --nthreads 8
[2025-11-26 14:40:17] Threads: 8
[2025-11-26 14:40:17] Checking for CVMFS
[2025-11-26 14:40:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 14:40:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 14:40:18] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 14:40:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 14:40:19] 2.11.2.0 12124 211304 139840 153323 0 85 23643553 25165824 1288 130560 34 86308493 99.882 39182632 2566 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-26 14:40:19] CVMFS is ok
[2025-11-26 14:40:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 14:40:19] Checking for apptainer binary...
[2025-11-26 14:40:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 14:40:19] Running /usr/bin/apptainer --version
[2025-11-26 14:40:19] apptainer version 1.3.2-1.el7
[2025-11-26 14:40:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 14:40:26] cg-vwn300.simple-grid.lan
[2025-11-26 14:40:26] apptainer works
[2025-11-26 14:40:26] Set ATHENA_PROC_NUMBER=8
[2025-11-26 14:40:26] Set ATHENA_CORE_NUMBER=8
[2025-11-26 14:40:26] Starting ATLAS job with PandaID=6895354845
[2025-11-26 14:40:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 14:32:52]  *** The last 200 lines of the pilot log: ***
[2025-11-27 14:32:52] 2025-11-27 13:32:00,334 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 14:32:52] 2025-11-27 13:32:01,786 | INFO     | time since job start (85667s) is within the limit (172800.0s)
[2025-11-27 14:32:52] 2025-11-27 13:32:02,838 | INFO     | monitor loop #5780: job 0:6895354845 is in state 'finished'
[2025-11-27 14:32:52] 2025-11-27 13:32:02,839 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 14:32:52] 2025-11-27 13:32:03,792 | INFO     | time since job start (85669s) is within the limit (172800.0s)
[2025-11-27 14:32:52] 2025-11-27 13:32:05,345 | INFO     | monitor loop #5781: job 0:6895354845 is in state 'finished'
[2025-11-27 14:32:52] 2025-11-27 13:32:05,346 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 14:32:52] 2025-11-27 13:32:05,800 | INFO     | time since job start (85671s) is within the limit (172800.0s)
[2025-11-27 14:32:52] 2025-11-27 13:32:07,807 | INFO     | time since job start (85673s) is within the limit (172800.0s)
[2025-11-27 14:32:52] 2025-11-27 13:32:07,850 | INFO     | monitor loop #5782: job 0:6895354845 is in state 'finished'
[2025-11-27 14:32:52] 2025-11-27 13:32:07,851 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 14:32:52] 2025-11-27 13:32:08,992 | INFO     | PID=12391 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 14:32:52] 2025-11-27 13:32:08,992 | INFO     | .. there are 9 such processes running
[2025-11-27 14:32:52] 2025-11-27 13:32:09,993 | INFO     | time since job start (85675s) is within the limit (172800.0s)
[2025-11-27 14:32:52] 2025-11-27 13:32:10,224 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 14:32:52] 2025-11-27 13:32:10,225 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.9959999999996
[2025-11-27 14:32:52] 2025-11-27 13:32:10,227 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-6895354845/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 14:32:52] 2025-11-27 13:32:10,227 | INFO     | extracted standard info from prmon json
[2025-11-27 14:32:52] 2025-11-27 13:32:10,228 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 14:32:52] 2025-11-27 13:32:10,228 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 14:32:52] 2025-11-27 13:32:10,259 | INFO     | fitting pss+swap vs Time
[2025-11-27 14:32:52] 2025-11-27 13:32:10,262 | INFO     | sum of square deviations: 839974540879.3256
[2025-11-27 14:32:52] 2025-11-27 13:32:10,357 | INFO     | sum of deviations: 2824551172519.7026
[2025-11-27 14:32:52] 2025-11-27 13:32:10,358 | INFO     | mean x: 1764207672.571736
[2025-11-27 14:32:52] 2025-11-27 13:32:10,358 | INFO     | mean y: 2826939.6779053085
[2025-11-27 14:32:52] 2025-11-27 13:32:10,358 | INFO     | intersect: -5929608637.374478
[2025-11-27 14:32:52] 2025-11-27 13:32:10,360 | INFO     | chi2: 27.90522719222394
[2025-11-27 14:32:52] 2025-11-27 13:32:10,362 | INFO     | sum of square deviations: 830968902101.0643
[2025-11-27 14:32:52] 2025-11-27 13:32:10,380 | INFO     | monitor loop #5783: job 0:6895354845 is in state 'finished'
[2025-11-27 14:32:52] 2025-11-27 13:32:10,381 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 14:32:52] 2025-11-27 13:32:10,441 | INFO     | sum of deviations: 3290615247900.798
[2025-11-27 14:32:52] 2025-11-27 13:32:10,441 | INFO     | mean x: 1764207520.075594
[2025-11-27 14:32:52] 2025-11-27 13:32:10,442 | INFO     | mean y: 2834831.221022318
[2025-11-27 14:32:52] 2025-11-27 13:32:10,442 | INFO     | intersect: -6983381080.5219
[2025-11-27 14:32:52] 2025-11-27 13:32:10,457 | INFO     | chi2: 24.537119339936474
[2025-11-27 14:32:52] 2025-11-27 13:32:10,458 | INFO     | current chi2=24.537119339936474 (change=12.06980982124389 %)
[2025-11-27 14:32:52] 2025-11-27 13:32:10,458 | INFO     | right removable region: 1388
[2025-11-27 14:32:52] 2025-11-27 13:32:10,460 | INFO     | sum of square deviations: 830967990761.0641
[2025-11-27 14:32:52] 2025-11-27 13:32:10,523 | INFO     | sum of deviations: 2240404159994.834
[2025-11-27 14:32:52] 2025-11-27 13:32:10,523 | INFO     | mean x: 1764207825.075594
[2025-11-27 14:32:52] 2025-11-27 13:32:10,523 | INFO     | mean y: 2836830.2397408206
[2025-11-27 14:32:52] 2025-11-27 13:32:10,523 | INFO     | intersect: -4753710466.816505
[2025-11-27 14:32:52] 2025-11-27 13:32:10,525 | INFO     | chi2: 23.175971853129056
[2025-11-27 14:32:52] 2025-11-27 13:32:10,525 | INFO     | current chi2=23.175971853129056 (change=16.947560779626038 %)
[2025-11-27 14:32:52] 2025-11-27 13:32:10,525 | INFO     | left removable region: 10
[2025-11-27 14:32:52] 2025-11-27 13:32:10,527 | INFO     | sum of square deviations: 811381759296.7349
[2025-11-27 14:32:52] 2025-11-27 13:32:10,585 | INFO     | sum of deviations: 2291544143863.6313
[2025-11-27 14:32:52] 2025-11-27 13:32:10,585 | INFO     | mean x: 1764207794.5841799
[2025-11-27 14:32:52] 2025-11-27 13:32:10,585 | INFO     | mean y: 2855357.6712626996
[2025-11-27 14:32:52] 2025-11-27 13:32:10,585 | INFO     | intersect: -4979706788.835472
[2025-11-27 14:32:52] 2025-11-27 13:32:10,587 | INFO     | chi2: 15.428990717512567
[2025-11-27 14:32:52] 2025-11-27 13:32:10,587 | INFO     | current memory leak: 2.82 B/s (using 1378 data points, chi2=15.43)
[2025-11-27 14:32:52] 2025-11-27 13:32:10,589 | INFO     | could have reported an average CPU frequency of 1999 MHz (47 samples)
[2025-11-27 14:32:52] 2025-11-27 13:32:10,589 | INFO     | ..............................
[2025-11-27 14:32:52] 2025-11-27 13:32:10,589 | INFO     | . Timing measurements:
[2025-11-27 14:32:52] 2025-11-27 13:32:10,589 | INFO     | . get job = 0 s
[2025-11-27 14:32:52] 2025-11-27 13:32:10,589 | INFO     | . initial setup = 12 s
[2025-11-27 14:32:52] 2025-11-27 13:32:10,590 | INFO     | . payload setup = 168 s
[2025-11-27 14:32:52] 2025-11-27 13:32:10,590 | INFO     | . stage-in = 0 s
[2025-11-27 14:32:52] 2025-11-27 13:32:10,590 | INFO     | . payload execution = 85199 s
[2025-11-27 14:32:52] 2025-11-27 13:32:10,590 | INFO     | . stage-out = 8 s
[2025-11-27 14:32:52] 2025-11-27 13:32:10,590 | INFO     | . log creation = 2 s
[2025-11-27 14:32:52] 2025-11-27 13:32:10,590 | INFO     | ..............................
[2025-11-27 14:32:52] 2025-11-27 13:32:10,714 | INFO     | 
[2025-11-27 14:32:52] 2025-11-27 13:32:10,715 | INFO     | job summary report
[2025-11-27 14:32:52] 2025-11-27 13:32:10,715 | INFO     | --------------------------------------------------
[2025-11-27 14:32:52] 2025-11-27 13:32:10,715 | INFO     | PanDA job id: 6895354845
[2025-11-27 14:32:52] 2025-11-27 13:32:10,715 | INFO     | task id: 47556137
[2025-11-27 14:32:52] 2025-11-27 13:32:10,715 | INFO     | errors: (none)
[2025-11-27 14:32:52] 2025-11-27 13:32:10,715 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 14:32:52] 2025-11-27 13:32:10,715 | INFO     | pilot state: finished 
[2025-11-27 14:32:52] 2025-11-27 13:32:10,715 | INFO     | transexitcode: 0
[2025-11-27 14:32:52] 2025-11-27 13:32:10,715 | INFO     | exeerrorcode: 0
[2025-11-27 14:32:52] 2025-11-27 13:32:10,715 | INFO     | exeerrordiag: 
[2025-11-27 14:32:52] 2025-11-27 13:32:10,715 | INFO     | exitcode: 0
[2025-11-27 14:32:52] 2025-11-27 13:32:10,716 | INFO     | exitmsg: OK
[2025-11-27 14:32:52] 2025-11-27 13:32:10,716 | INFO     | cpuconsumptiontime: 319717 s
[2025-11-27 14:32:52] 2025-11-27 13:32:10,716 | INFO     | nevents: 1000
[2025-11-27 14:32:52] 2025-11-27 13:32:10,716 | INFO     | neventsw: 0
[2025-11-27 14:32:52] 2025-11-27 13:32:10,716 | INFO     | pid: 19038
[2025-11-27 14:32:52] 2025-11-27 13:32:10,716 | INFO     | pgrp: 19038
[2025-11-27 14:32:52] 2025-11-27 13:32:10,716 | INFO     | corecount: 8
[2025-11-27 14:32:52] 2025-11-27 13:32:10,716 | INFO     | event service: False
[2025-11-27 14:32:52] 2025-11-27 13:32:10,716 | INFO     | sizes: {0: 2284037, 1: 2284292, 12: 2284292, 23: 2284320, 34: 2284348, 44: 2284376, 55: 2284532, 66: 2284560, 76: 2284588, 87: 2284644, 95: 2284934, 98: 2285242, 8
[2025-11-27 14:32:52] 2025-11-27 13:32:10,716 | INFO     | --------------------------------------------------
[2025-11-27 14:32:52] 2025-11-27 13:32:10,716 | INFO     | 
[2025-11-27 14:32:52] 2025-11-27 13:32:10,717 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-11-27 14:32:52] 2025-11-27 13:32:11,172 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 14:32:52] 2025-11-27 13:32:11,172 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 14:32:52] 2025-11-27 13:32:11,172 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 14:32:52] 2025-11-27 13:32:11,172 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 14:32:52] 2025-11-27 13:32:11,172 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 14:32:52] 2025-11-27 13:32:11,173 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 14:32:52] 2025-11-27 13:32:11,173 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 14:32:52] 2025-11-27 13:32:11,173 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 14:32:52] 2025-11-27 13:32:11,173 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 14:32:52] 2025-11-27 13:32:11,173 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 14:32:52] 2025-11-27 13:32:11,173 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 14:32:52] 2025-11-27 13:32:11,173 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 14:32:52] 2025-11-27 13:32:11,173 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 14:32:52] 2025-11-27 13:32:11,173 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 14:32:52] 2025-11-27 13:32:11,173 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 14:32:52] 2025-11-27 13:32:11,173 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 14:32:52] 2025-11-27 13:32:11,174 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 14:32:52] 2025-11-27 13:32:11,174 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 14:32:52] 2025-11-27 13:32:11,174 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 14:32:52] 2025-11-27 13:32:11,174 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 14:32:52] 2025-11-27 13:32:11,174 | INFO     | job 6895354845 has completed (purged errors)
[2025-11-27 14:32:52] 2025-11-27 13:32:11,174 | INFO     | overall cleanup function is called
[2025-11-27 14:32:52] 2025-11-27 13:32:12,191 | INFO     | --- collectZombieJob: --- 10, [19038]
[2025-11-27 14:32:52] 2025-11-27 13:32:12,192 | INFO     | zombie collector waiting for pid 19038
[2025-11-27 14:32:52] 2025-11-27 13:32:12,192 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 14:32:52] 2025-11-27 13:32:12,192 | INFO     | collected zombie processes
[2025-11-27 14:32:52] 2025-11-27 13:32:12,192 | INFO     | will attempt to kill all subprocesses of pid=19038
[2025-11-27 14:32:52] 2025-11-27 13:32:12,315 | INFO     | process IDs to be killed: [19038] (in reverse order)
[2025-11-27 14:32:52] 2025-11-27 13:32:13,425 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 14:32:52] 2025-11-27 13:32:13,425 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 14:32:52] 2025-11-27 13:32:13,428 | INFO     | did not find any defunct processes belonging to 19038
[2025-11-27 14:32:52] 2025-11-27 13:32:13,430 | INFO     | did not find any defunct processes belonging to 19038
[2025-11-27 14:32:52] 2025-11-27 13:32:13,468 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 14:32:52] 2025-11-27 13:32:13,468 | INFO     | ready for new job
[2025-11-27 14:32:52] 2025-11-27 13:32:13,468 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 14:32:52] 2025-11-27 13:32:13,473 | INFO     | ***************************************
[2025-11-27 14:32:52] 2025-11-27 13:32:13,473 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 14:32:52] 2025-11-27 13:32:13,473 | INFO     | ***************************************
[2025-11-27 14:32:52] 2025-11-27 13:32:13,473 | INFO     | 
[2025-11-27 14:32:52] 2025-11-27 13:32:13,474 | INFO     | pilot is running in a VM
[2025-11-27 14:32:52] 2025-11-27 13:32:13,474 | INFO     | architecture information:
[2025-11-27 14:32:52] 2025-11-27 13:32:13,480 | INFO     | executing command: cat /etc/os-release
[2025-11-27 14:32:52] 2025-11-27 13:32:13,731 | INFO     | cat /etc/os-release:
[2025-11-27 14:32:52] NAME="CentOS Linux"
[2025-11-27 14:32:52] VERSION="7 (Core)"
[2025-11-27 14:32:52] ID="centos"
[2025-11-27 14:32:52] ID_LIKE="rhel fedora"
[2025-11-27 14:32:52] VERSION_ID="7"
[2025-11-27 14:32:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 14:32:52] ANSI_COLOR="0;31"
[2025-11-27 14:32:52] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 14:32:52] HOME_URL="https://www.centos.org/"
[2025-11-27 14:32:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 14:32:52] 
[2025-11-27 14:32:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 14:32:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 14:32:52] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 14:32:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 14:32:52] 
[2025-11-27 14:32:52] 2025-11-27 13:32:13,731 | INFO     | ***************************************
[2025-11-27 14:32:52] 2025-11-27 13:32:14,235 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-11-27 14:32:52] 2025-11-27 13:32:14,427 | INFO     | sufficient remaining disk space (495581134848 B)
[2025-11-27 14:32:52] 2025-11-27 13:32:14,427 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 14:32:52] 2025-11-27 13:32:14,427 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 14:32:52] 2025-11-27 13:32:14,428 | INFO     | update_server=False
[2025-11-27 14:32:52] 2025-11-27 13:32:14,428 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 14:32:52] 2025-11-27 13:32:14,428 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 14:32:52] 2025-11-27 13:32:14,433 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 14:32:52] 2025-11-27 13:32:14,434 | INFO     | aborting loop
[2025-11-27 14:32:52] 2025-11-27 13:32:14,460 | INFO     | all payload control threads have been joined
[2025-11-27 14:32:52] 2025-11-27 13:32:14,585 | INFO     | all data control threads have been joined
[2025-11-27 14:32:52] 2025-11-27 13:32:15,433 | INFO     | [job] retrieve thread has finished
[2025-11-27 14:32:52] 2025-11-27 13:32:15,440 | INFO     | [job] job monitor thread has finished
[2025-11-27 14:32:52] 2025-11-27 13:32:15,467 | INFO     | [payload] control thread has finished
[2025-11-27 14:32:52] 2025-11-27 13:32:15,592 | INFO     | [data] control thread has finished
[2025-11-27 14:32:52] 2025-11-27 13:32:15,727 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 14:32:52] 2025-11-27 13:32:15,981 | INFO     | [job] validate thread has finished
[2025-11-27 14:32:52] 2025-11-27 13:32:16,120 | INFO     | all job control threads have been joined
[2025-11-27 14:32:52] 2025-11-27 13:32:16,196 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 14:32:52] 2025-11-27 13:32:16,307 | INFO     | [payload] failed_post thread has finished
[2025-11-27 14:32:52] 2025-11-27 13:32:16,336 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 14:32:52] 2025-11-27 13:32:16,436 | INFO     | [data] copytool_out thread has finished
[2025-11-27 14:32:52] 2025-11-27 13:32:16,444 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 14:32:52] 2025-11-27 13:32:16,550 | INFO     | [payload] validate_post thread has finished
[2025-11-27 14:32:52] 2025-11-27 13:32:16,565 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 14:32:52] 2025-11-27 13:32:16,654 | INFO     | [data] copytool_in thread has finished
[2025-11-27 14:32:52] 2025-11-27 13:32:16,677 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 14:32:52] 2025-11-27 13:32:16,733 | INFO     | [job] queue monitor thread has finished
[2025-11-27 14:32:52] 2025-11-27 13:32:17,126 | INFO     | [job] control thread has finished
[2025-11-27 14:32:52] 2025-11-27 13:32:20,574 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 14:32:52] 2025-11-27 13:32:42,958 | INFO     | [monitor] cgroup control has ended
[2025-11-27 14:32:52] 2025-11-27 13:32:43,195 | INFO     | PID=12391 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 14:32:52] 2025-11-27 13:32:43,195 | INFO     | .. there are 9 such processes running
[2025-11-27 14:32:52] 2025-11-27 13:32:43,195 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 14:32:52] 2025-11-27 13:32:43,195 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 14:32:52] 2025-11-27 13:32:43,195 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 14:32:52] 2025-11-27 13:32:43,355 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140700080981824)>', '<ExcThread(monitor, started 140699353732864)>']
[2025-11-27 14:32:52] 2025-11-27 13:32:44,201 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 14:32:52] 2025-11-27 13:32:44,202 | INFO     | [monitor] control thread has ended
[2025-11-27 14:32:52] 2025-11-27 13:32:48,381 | INFO     | all workflow threads have been joined
[2025-11-27 14:32:52] 2025-11-27 13:32:48,382 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 14:32:52] 2025-11-27 13:32:48,382 | INFO     | traces error code: 0
[2025-11-27 14:32:52] 2025-11-27 13:32:48,382 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 14:32:52] 2025-11-27 13:32:48,699 [wrapper] ==== pilot stdout END ====
[2025-11-27 14:32:52] 2025-11-27 13:32:48,793 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 14:32:52] 2025-11-27 13:32:48,899 [wrapper] pilotpid: 12391
[2025-11-27 14:32:52] 2025-11-27 13:32:48,950 [wrapper] Pilot exit status: 0
[2025-11-27 14:32:52] 2025-11-27 13:32:49,222 [wrapper] pandaids: 6895354845
[2025-11-27 14:32:52] 2025-11-27 13:32:49,908 [wrapper] cleanup supervisor_pilot 25034 12392
[2025-11-27 14:32:52] 2025-11-27 13:32:50,009 [wrapper] Test setup, not cleaning
[2025-11-27 14:32:52] 2025-11-27 13:32:50,073 [wrapper] apfmon messages muted
[2025-11-27 14:32:52] 2025-11-27 13:32:50,149 [wrapper] ==== wrapper stdout END ====
[2025-11-27 14:32:52] 2025-11-27 13:32:50,249 [wrapper] ==== wrapper stderr END ====
[2025-11-27 14:32:52]  *** Error codes and diagnostics ***
[2025-11-27 14:32:52]     "exeErrorCode": 0,
[2025-11-27 14:32:52]     "exeErrorDiag": "",
[2025-11-27 14:32:52]     "pilotErrorCode": 0,
[2025-11-27 14:32:52]     "pilotErrorDiag": "",
[2025-11-27 14:32:52]  *** Listing of results directory ***
[2025-11-27 14:32:53] total 1339336
[2025-11-27 14:32:53] -rw-r--r--. 1 boinc boinc    576529 Nov 23 06:21 pilot3.tar.gz
[2025-11-27 14:32:53] -rw-r--r--. 1 boinc boinc      5112 Nov 23 06:42 queuedata.json
[2025-11-27 14:32:53] -rwx------. 1 boinc boinc     36292 Nov 23 06:43 runpilot2-wrapper.sh
[2025-11-27 14:32:53] -rw-r--r--. 1 boinc boinc       100 Nov 26 14:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 14:32:53] -rwxr-xr-x. 1 boinc boinc      7986 Nov 26 14:40 run_atlas
[2025-11-27 14:32:53] -rw-r--r--. 1 boinc boinc       105 Nov 26 14:40 job.xml
[2025-11-27 14:32:53] -rw-r--r--. 2 boinc boinc 411810598 Nov 26 14:40 EVNT.47483658._000638.pool.root.1
[2025-11-27 14:32:53] -rw-r--r--. 1 boinc boinc      6391 Nov 26 14:40 init_data.xml
[2025-11-27 14:32:53] -rw-r--r--. 2 boinc boinc     15847 Nov 26 14:40 start_atlas.sh
[2025-11-27 14:32:53] drwxrwx--x. 2 boinc boinc        68 Nov 26 14:40 shared
[2025-11-27 14:32:53] -rw-r--r--. 2 boinc boinc    590099 Nov 26 14:40 input.tar.gz
[2025-11-27 14:32:53] -rw-r--r--. 1 boinc boinc         0 Nov 26 14:40 boinc_lockfile
[2025-11-27 14:32:53] -rw-r--r--. 1 boinc boinc      2785 Nov 26 14:40 pandaJob.out
[2025-11-27 14:32:53] -rw-------. 1 boinc boinc    991830 Nov 26 14:44 agis_schedconf.cvmfs.json
[2025-11-27 14:32:53] drwx------. 5 boinc boinc      4096 Nov 26 14:44 pilot3
[2025-11-27 14:32:53] -rw-r--r--. 1 boinc boinc       533 Nov 27 14:00 boinc_task_state.xml
[2025-11-27 14:32:53] -rw-------. 1 boinc boinc 927923338 Nov 27 14:29 HITS.47556137._006340.pool.root.1
[2025-11-27 14:32:53] -rw-------. 1 boinc boinc      1028 Nov 27 14:30 memory_monitor_summary.json
[2025-11-27 14:32:53] -rw-------. 1 boinc boinc   1516240 Nov 27 14:30 agis_ddmendpoints.agis.ALL.json
[2025-11-27 14:32:53] -rw-------. 1 boinc boinc   2485700 Nov 27 14:30 log.47556137._006340.job.log.tgz.1
[2025-11-27 14:32:53] -rw-------. 1 boinc boinc        95 Nov 27 14:32 pilot_heartbeat.json
[2025-11-27 14:32:53] -rw-------. 1 boinc boinc      7948 Nov 27 14:32 heartbeat.json
[2025-11-27 14:32:53] -rw-r--r--. 1 boinc boinc      8192 Nov 27 14:32 boinc_mmap_file
[2025-11-27 14:32:53] -rw-r--r--. 1 boinc boinc        29 Nov 27 14:32 wrapper_checkpoint.txt
[2025-11-27 14:32:53] -rw-------. 1 boinc boinc      4884 Nov 27 14:32 pilotlog.txt
[2025-11-27 14:32:53] -rw-------. 1 boinc boinc  11439593 Nov 27 14:32 log.47556137._006340.job.log.1
[2025-11-27 14:32:53] -rw-------. 1 boinc boinc       353 Nov 27 14:32 output.list
[2025-11-27 14:32:53] -rw-r--r--. 1 boinc boinc       620 Nov 27 14:32 runtime_log
[2025-11-27 14:32:53] -rw-------. 1 boinc boinc  13946880 Nov 27 14:32 result.tar.gz
[2025-11-27 14:32:53] -rw-------. 1 boinc boinc       662 Nov 27 14:32 YmlKDmj3Hh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmWgKKDmeMa3dn.diag
[2025-11-27 14:32:53] -rw-r--r--. 1 boinc boinc      8817 Nov 27 14:32 runtime_log.err
[2025-11-27 14:32:53] -rw-r--r--. 1 boinc boinc     21528 Nov 27 14:32 stderr.txt
[2025-11-27 14:32:53] HITS file was successfully produced:
[2025-11-27 14:32:53] -rw-------. 1 boinc boinc 927923338 Nov 27 14:29 shared/HITS.pool.root.1
[2025-11-27 14:32:53]  *** Contents of shared directory: ***
[2025-11-27 14:32:53] total 1322552
[2025-11-27 14:32:53] -rw-r--r--. 2 boinc boinc 411810598 Nov 26 14:40 ATLAS.root_0
[2025-11-27 14:32:53] -rw-r--r--. 2 boinc boinc     15847 Nov 26 14:40 start_atlas.sh
[2025-11-27 14:32:53] -rw-r--r--. 2 boinc boinc    590099 Nov 26 14:40 input.tar.gz
[2025-11-27 14:32:53] -rw-------. 1 boinc boinc 927923338 Nov 27 14:29 HITS.pool.root.1
[2025-11-27 14:32:53] -rw-------. 1 boinc boinc  13946880 Nov 27 14:32 result.tar.gz
14:32:54 (8614): run_atlas exited; CPU time 320321.826515
14:32:54 (8614): called boinc_finish(0)

</stderr_txt>
]]>

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