Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
02:05:49 (529757): wrapper (7.7.26015): starting
02:05:49 (529757): wrapper: running run_atlas (--nthreads 3)
[2025-11-24 02:05:49] Arguments: --nthreads 3
[2025-11-24 02:05:49] Threads: 3
[2025-11-24 02:05:49] Checking for CVMFS
[2025-11-24 02:05:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 02:05:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 02:05:49] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 02:05:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 02:05:49] 2.9.2.0 154488 80 59960 153227 3 88 34930790 36864001 0 130560 0 1126851 100.000 1304 1236 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-24 02:05:49] CVMFS is ok
[2025-11-24 02:05:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 02:05:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 02:05:49] Further information can be found at the LHC@home message board.
[2025-11-24 02:05:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 02:05:49] Checking for apptainer binary...
[2025-11-24 02:05:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 02:05:49] Running /usr/bin/apptainer --version
[2025-11-24 02:05:50] apptainer version 1.4.1-1.1
[2025-11-24 02:05:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 02:05:50] thA335
[2025-11-24 02:05:50] apptainer works
[2025-11-24 02:05:50] Set ATHENA_PROC_NUMBER=3
[2025-11-24 02:05:50] Set ATHENA_CORE_NUMBER=3
[2025-11-24 02:05:50] Starting ATLAS job with PandaID=6894253385
[2025-11-24 02:05:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 02:10:08]  *** The last 200 lines of the pilot log: ***
[2025-11-24 02:10:08] 2025-11-24 01:09:16,997 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 02:10:08] 2025-11-24 01:09:16,997 | INFO     | update_server=False
[2025-11-24 02:10:08] 2025-11-24 01:09:16,997 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 02:10:08] 2025-11-24 01:09:16,998 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 02:10:08] 2025-11-24 01:09:16,998 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 02:10:08] 2025-11-24 01:09:17,013 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-24 02:10:08] 2025-11-24 01:09:17,013 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-24 02:10:08] 2025-11-24 01:09:17,013 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 02:10:08] 2025-11-24 01:09:17,013 | INFO     | will abort loop
[2025-11-24 02:10:08] 2025-11-24 01:09:17,291 | INFO     | all data control threads have been joined
[2025-11-24 02:10:08] 2025-11-24 01:09:17,680 | INFO     | all payload control threads have been joined
[2025-11-24 02:10:08] 2025-11-24 01:09:18,003 | INFO     | [job] queue monitor thread has finished
[2025-11-24 02:10:08] 2025-11-24 01:09:18,004 | INFO     | [job] retrieve thread has finished
[2025-11-24 02:10:08] 2025-11-24 01:09:18,019 | INFO     | [job] job monitor thread has finished
[2025-11-24 02:10:08] 2025-11-24 01:09:18,212 | INFO     | all job control threads have been joined
[2025-11-24 02:10:08] 2025-11-24 01:09:18,232 | INFO     | [payload] validate_post thread has finished
[2025-11-24 02:10:08] 2025-11-24 01:09:18,298 | INFO     | [data] control thread has finished
[2025-11-24 02:10:08] 2025-11-24 01:09:18,374 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 02:10:08] 2025-11-24 01:09:18,609 | INFO     | [job] validate thread has finished
[2025-11-24 02:10:08] 2025-11-24 01:09:18,623 | INFO     | [data] copytool_in thread has finished
[2025-11-24 02:10:08] 2025-11-24 01:09:18,686 | INFO     | [payload] control thread has finished
[2025-11-24 02:10:08] 2025-11-24 01:09:18,694 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 02:10:08] 2025-11-24 01:09:18,696 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 02:10:08] 2025-11-24 01:09:18,747 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 02:10:08] 2025-11-24 01:09:19,004 | INFO     | [data] copytool_out thread has finished
[2025-11-24 02:10:08] 2025-11-24 01:09:19,218 | INFO     | [job] control thread has finished
[2025-11-24 02:10:08] 2025-11-24 01:09:19,273 | INFO     | [payload] failed_post thread has finished
[2025-11-24 02:10:08] 2025-11-24 01:09:19,285 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 02:10:08] 2025-11-24 01:09:23,293 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 02:10:08] 2025-11-24 01:09:46,863 | INFO     | PID=533495 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-24 02:10:08] 2025-11-24 01:09:46,863 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 02:10:08] 2025-11-24 01:09:46,863 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 02:10:08] 2025-11-24 01:09:46,863 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 02:10:08] 2025-11-24 01:10:01,861 | INFO     | [monitor] cgroup control has ended
[2025-11-24 02:10:08] 2025-11-24 01:10:03,148 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140006515930944)>', '<ExcThread(monitor, started 140005800408832)>']
[2025-11-24 02:10:08] 2025-11-24 01:10:03,953 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 02:10:08] 2025-11-24 01:10:03,953 | INFO     | [monitor] control thread has ended
[2025-11-24 02:10:08] 2025-11-24 01:10:08,174 | INFO     | all workflow threads have been joined
[2025-11-24 02:10:08] 2025-11-24 01:10:08,174 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 02:10:08] 2025-11-24 01:10:08,175 | INFO     | traces error code: 0
[2025-11-24 02:10:08] 2025-11-24 01:10:08,175 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 02:10:08] 2025-11-24 01:10:08,221 [wrapper] ==== pilot stdout END ====
[2025-11-24 02:10:08] 2025-11-24 01:10:08,224 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 02:10:08] 2025-11-24 01:10:08,227 [wrapper] pilotpid: 533495
[2025-11-24 02:10:08] 2025-11-24 01:10:08,230 [wrapper] Pilot exit status: 0
[2025-11-24 02:10:08] 2025-11-24 01:10:08,238 [wrapper] pandaids: 6894253385
[2025-11-24 02:10:08] 2025-11-24 01:10:08,255 [wrapper] cleanup supervisor_pilot  533501 533496
[2025-11-24 02:10:08] 2025-11-24 01:10:08,258 [wrapper] Test setup, not cleaning
[2025-11-24 02:10:08] 2025-11-24 01:10:08,261 [wrapper] apfmon messages muted
[2025-11-24 02:10:08] 2025-11-24 01:10:08,263 [wrapper] ==== wrapper stdout END ====
[2025-11-24 02:10:08] 2025-11-24 01:10:08,266 [wrapper] ==== wrapper stderr END ====
[2025-11-24 02:10:08]  *** Error codes and diagnostics ***
[2025-11-24 02:10:08]     "exeErrorCode": 65,
[2025-11-24 02:10:08]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-24 02:10:08]     "pilotErrorCode": 1305,
[2025-11-24 02:10:08]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-24 02:10:08]  *** Listing of results directory ***
[2025-11-24 02:10:08] total 403960
[2025-11-24 02:10:08] -rw-r--r-- 1 boinc boinc    576529 Nov 21 03:10 pilot3.tar.gz
[2025-11-24 02:10:08] -rw-r--r-- 1 boinc boinc      5112 Nov 21 03:41 queuedata.json
[2025-11-24 02:10:08] -rwx------ 1 boinc boinc     36292 Nov 21 03:43 runpilot2-wrapper.sh
[2025-11-24 02:10:08] -rw-r--r-- 1 boinc boinc       100 Nov 24 02:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 02:10:08] -rwxr-xr-x 1 boinc boinc      7986 Nov 24 02:05 run_atlas
[2025-11-24 02:10:08] -rw-r--r-- 1 boinc boinc       105 Nov 24 02:05 job.xml
[2025-11-24 02:10:08] -rw-r--r-- 2 boinc boinc 409471701 Nov 24 02:05 EVNT.47493127._002130.pool.root.1
[2025-11-24 02:10:08] -rw-r--r-- 2 boinc boinc    590106 Nov 24 02:05 input.tar.gz
[2025-11-24 02:10:08] -rw-r--r-- 2 boinc boinc     15847 Nov 24 02:05 start_atlas.sh
[2025-11-24 02:10:08] drwxrwx--x 2 boinc boinc      4096 Nov 24 02:05 shared
[2025-11-24 02:10:08] -rw-r--r-- 1 boinc boinc         0 Nov 24 02:05 boinc_setup_complete
[2025-11-24 02:10:08] -rw-r--r-- 1 boinc boinc      6195 Nov 24 02:05 init_data.xml
[2025-11-24 02:10:08] -rw-r--r-- 1 boinc boinc         0 Nov 24 02:05 boinc_lockfile
[2025-11-24 02:10:08] -rw-r--r-- 1 boinc boinc      2786 Nov 24 02:05 pandaJob.out
[2025-11-24 02:10:08] -rw------- 1 boinc boinc    989786 Nov 24 02:06 agis_schedconf.cvmfs.json
[2025-11-24 02:10:08] -rw------- 1 boinc boinc   1526164 Nov 24 02:06 agis_ddmendpoints.agis.ALL.json
[2025-11-24 02:10:08] drwx------ 5 boinc boinc      4096 Nov 24 02:06 pilot3
[2025-11-24 02:10:08] -rw-r--r-- 1 boinc boinc       522 Nov 24 02:06 boinc_task_state.xml
[2025-11-24 02:10:08] -rw------- 1 boinc boinc       954 Nov 24 02:07 memory_monitor_summary.json
[2025-11-24 02:10:08] -rw------- 1 boinc boinc     55664 Nov 24 02:07 log.47533967._001016.job.log.tgz.1
[2025-11-24 02:10:08] -rw------- 1 boinc boinc        95 Nov 24 02:09 pilot_heartbeat.json
[2025-11-24 02:10:08] -rw------- 1 boinc boinc      8405 Nov 24 02:09 heartbeat.json
[2025-11-24 02:10:08] -rw-r--r-- 1 boinc boinc      8192 Nov 24 02:09 boinc_mmap_file
[2025-11-24 02:10:08] -rw-r--r-- 1 boinc boinc        22 Nov 24 02:09 wrapper_checkpoint.txt
[2025-11-24 02:10:08] -rw------- 1 boinc boinc      4937 Nov 24 02:10 pilotlog.txt
[2025-11-24 02:10:08] -rw------- 1 boinc boinc     93616 Nov 24 02:10 log.47533967._001016.job.log.1
[2025-11-24 02:10:08] -rw------- 1 boinc boinc       186 Nov 24 02:10 output.list
[2025-11-24 02:10:08] -rw-r--r-- 1 boinc boinc       620 Nov 24 02:10 runtime_log
[2025-11-24 02:10:08] -rw------- 1 boinc boinc    163840 Nov 24 02:10 result.tar.gz
[2025-11-24 02:10:08] -rw-r--r-- 1 boinc boinc      8744 Nov 24 02:10 runtime_log.err
[2025-11-24 02:10:08] -rw------- 1 boinc boinc       649 Nov 24 02:10 FgpKDmUIWg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmxGHKDmVPXu8n.diag
[2025-11-24 02:10:08] -rw-r--r-- 1 boinc boinc      8116 Nov 24 02:10 stderr.txt
[2025-11-24 02:10:08] No HITS result produced
[2025-11-24 02:10:08]  *** Contents of shared directory: ***
[2025-11-24 02:10:08] total 400632
[2025-11-24 02:10:08] -rw-r--r-- 2 boinc boinc 409471701 Nov 24 02:05 ATLAS.root_0
[2025-11-24 02:10:08] -rw-r--r-- 2 boinc boinc    590106 Nov 24 02:05 input.tar.gz
[2025-11-24 02:10:08] -rw-r--r-- 2 boinc boinc     15847 Nov 24 02:05 start_atlas.sh
[2025-11-24 02:10:08] -rw------- 1 boinc boinc    163840 Nov 24 02:10 result.tar.gz
02:10:09 (529757): run_atlas exited; CPU time 31.626262
02:10:09 (529757): called boinc_finish(0)

</stderr_txt>
]]>

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