Stderr output

<core_client_version>7.16.6</core_client_version>
<![CDATA[
<stderr_txt>
05:13:09 (3686055): wrapper (7.7.26015): starting
05:13:09 (3686055): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 05:13:09] Arguments: --nthreads 8
[2025-11-24 05:13:09] Threads: 8
[2025-11-24 05:13:09] Checking for CVMFS
[2025-11-24 05:13:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 05:13:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 05:13:11] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 05:13:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 05:13:13] 2.11.5.0 6031 3802 155476 153232 3 72 2847475 4194305 19073 130560 0 29681419 99.982 437598 454 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://127.0.0.1:3128 1
[2025-11-24 05:13:13] CVMFS is ok
[2025-11-24 05:13:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 05:13:13] Checking for apptainer binary...
[2025-11-24 05:13:13] apptainer is not installed, using version from CVMFS
[2025-11-24 05:13:13] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 05:13:16] mikemint-desktop
[2025-11-24 05:13:16] apptainer works
[2025-11-24 05:13:16] Set ATHENA_PROC_NUMBER=8
[2025-11-24 05:13:16] Set ATHENA_CORE_NUMBER=8
[2025-11-24 05:13:16] Starting ATLAS job with PandaID=6895336362
[2025-11-24 05:13:16] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/12 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 20:37:27]  *** The last 200 lines of the pilot log: ***
[2025-11-24 20:37:28] 2025-11-24 19:36:39,559 | INFO     | time since job start (55260s) is within the limit (172800.0s)
[2025-11-24 20:37:28] 2025-11-24 19:36:40,891 | INFO     | monitor loop #3401: job 0:6895336362 is in state 'finished'
[2025-11-24 20:37:28] 2025-11-24 19:36:40,891 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 20:37:28] 2025-11-24 19:36:41,567 | INFO     | time since job start (55262s) is within the limit (172800.0s)
[2025-11-24 20:37:28] 2025-11-24 19:36:43,403 | INFO     | monitor loop #3402: job 0:6895336362 is in state 'finished'
[2025-11-24 20:37:28] 2025-11-24 19:36:43,403 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 20:37:28] 2025-11-24 19:36:43,575 | INFO     | time since job start (55264s) is within the limit (172800.0s)
[2025-11-24 20:37:28] 2025-11-24 19:36:45,583 | INFO     | time since job start (55266s) is within the limit (172800.0s)
[2025-11-24 20:37:28] 2025-11-24 19:36:45,910 | INFO     | monitor loop #3403: job 0:6895336362 is in state 'finished'
[2025-11-24 20:37:28] 2025-11-24 19:36:45,910 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 20:37:28] 2025-11-24 19:36:47,595 | INFO     | time since job start (55268s) is within the limit (172800.0s)
[2025-11-24 20:37:28] 2025-11-24 19:36:48,415 | INFO     | monitor loop #3404: job 0:6895336362 is in state 'finished'
[2025-11-24 20:37:28] 2025-11-24 19:36:48,415 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 20:37:28] 2025-11-24 19:36:49,603 | INFO     | time since job start (55270s) is within the limit (172800.0s)
[2025-11-24 20:37:28] 2025-11-24 19:36:50,934 | INFO     | monitor loop #3405: job 0:6895336362 is in state 'finished'
[2025-11-24 20:37:28] 2025-11-24 19:36:50,934 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 20:37:28] 2025-11-24 19:36:51,611 | INFO     | time since job start (55272s) is within the limit (172800.0s)
[2025-11-24 20:37:28] 2025-11-24 19:36:52,452 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-24 20:37:28] 2025-11-24 19:36:52,496 | INFO     | found 64 cores (64 cores per socket, 1 socket) HT, CPU MHz: 2360.1257890624993
[2025-11-24 20:37:28] 2025-11-24 19:36:52,573 | INFO     | using path: /var/lib/boinc-client/slots/12/PanDA_Pilot-6895336362/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 20:37:28] 2025-11-24 19:36:52,573 | INFO     | extracted standard info from prmon json
[2025-11-24 20:37:28] 2025-11-24 19:36:52,573 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 20:37:28] 2025-11-24 19:36:52,574 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 20:37:28] 2025-11-24 19:36:52,603 | INFO     | fitting pss+swap vs Time
[2025-11-24 20:37:28] 2025-11-24 19:36:52,608 | INFO     | sum of square deviations: 226050116910.78217
[2025-11-24 20:37:28] 2025-11-24 19:36:52,656 | INFO     | sum of deviations: 1036497386970.8865
[2025-11-24 20:37:28] 2025-11-24 19:36:52,656 | INFO     | mean x: 1763985460.4844444
[2025-11-24 20:37:28] 2025-11-24 19:36:52,657 | INFO     | mean y: 2744401.098888889
[2025-11-24 20:37:28] 2025-11-24 19:36:52,657 | INFO     | intersect: -8085578424.977707
[2025-11-24 20:37:28] 2025-11-24 19:36:52,658 | INFO     | chi2: 34.229152252136494
[2025-11-24 20:37:28] 2025-11-24 19:36:52,659 | INFO     | sum of square deviations: 222303768050.90958
[2025-11-24 20:37:28] 2025-11-24 19:36:52,709 | INFO     | sum of deviations: 1335814190211.822
[2025-11-24 20:37:28] 2025-11-24 19:36:52,709 | INFO     | mean x: 1763985307.9899442
[2025-11-24 20:37:28] 2025-11-24 19:36:52,709 | INFO     | mean y: 2756586.5363128493
[2025-11-24 20:37:28] 2025-11-24 19:36:52,709 | INFO     | intersect: -10596958507.80483
[2025-11-24 20:37:28] 2025-11-24 19:36:52,710 | INFO     | chi2: 30.548504938021807
[2025-11-24 20:37:28] 2025-11-24 19:36:52,711 | INFO     | current chi2=30.548504938021807 (change=10.752960771574324 %)
[2025-11-24 20:37:28] 2025-11-24 19:36:52,719 | INFO     | right removable region: 894
[2025-11-24 20:37:28] 2025-11-24 19:36:52,720 | INFO     | sum of square deviations: 222303227590.9096
[2025-11-24 20:37:28] 2025-11-24 19:36:52,758 | INFO     | sum of deviations: 673631409634.191
[2025-11-24 20:37:28] 2025-11-24 19:36:52,759 | INFO     | mean x: 1763985612.9899442
[2025-11-24 20:37:28] 2025-11-24 19:36:52,763 | INFO     | mean y: 2759168.7988826814
[2025-11-24 20:37:28] 2025-11-24 19:36:52,763 | INFO     | intersect: -5342534860.127936
[2025-11-24 20:37:28] 2025-11-24 19:36:52,764 | INFO     | chi2: 29.50726527920564
[2025-11-24 20:37:28] 2025-11-24 19:36:52,764 | INFO     | current chi2=29.50726527920564 (change=13.7949281891319 %)
[2025-11-24 20:37:28] 2025-11-24 19:36:52,764 | INFO     | left removable region: 10
[2025-11-24 20:37:28] 2025-11-24 19:36:52,765 | INFO     | sum of square deviations: 214206925170.99576
[2025-11-24 20:37:28] 2025-11-24 19:36:52,813 | INFO     | sum of deviations: 737517133120.4241
[2025-11-24 20:37:28] 2025-11-24 19:36:52,814 | INFO     | mean x: 1763985582.5022624
[2025-11-24 20:37:28] 2025-11-24 19:36:52,814 | INFO     | mean y: 2787133.037330317
[2025-11-24 20:37:28] 2025-11-24 19:36:52,814 | INFO     | intersect: -6070637377.558207
[2025-11-24 20:37:28] 2025-11-24 19:36:52,819 | INFO     | chi2: 21.557711217501584
[2025-11-24 20:37:28] 2025-11-24 19:36:52,823 | INFO     | current memory leak: 3.44 B/s (using 884 data points, chi2=21.56)
[2025-11-24 20:37:28] 2025-11-24 19:36:52,824 | INFO     | could have reported an average CPU frequency of 2354 MHz (33 samples)
[2025-11-24 20:37:28] 2025-11-24 19:36:52,825 | INFO     | ..............................
[2025-11-24 20:37:28] 2025-11-24 19:36:52,825 | INFO     | . Timing measurements:
[2025-11-24 20:37:28] 2025-11-24 19:36:52,825 | INFO     | . get job = 0 s
[2025-11-24 20:37:28] 2025-11-24 19:36:52,825 | INFO     | . initial setup = 4 s
[2025-11-24 20:37:28] 2025-11-24 19:36:52,825 | INFO     | . payload setup = 120 s
[2025-11-24 20:37:28] 2025-11-24 19:36:52,825 | INFO     | . stage-in = 0 s
[2025-11-24 20:37:28] 2025-11-24 19:36:52,825 | INFO     | . payload execution = 54953 s
[2025-11-24 20:37:28] 2025-11-24 19:36:52,826 | INFO     | . stage-out = 5 s
[2025-11-24 20:37:28] 2025-11-24 19:36:52,826 | INFO     | . log creation = 2 s
[2025-11-24 20:37:28] 2025-11-24 19:36:52,826 | INFO     | ..............................
[2025-11-24 20:37:28] 2025-11-24 19:36:53,044 | INFO     | 
[2025-11-24 20:37:28] 2025-11-24 19:36:53,045 | INFO     | job summary report
[2025-11-24 20:37:28] 2025-11-24 19:36:53,045 | INFO     | --------------------------------------------------
[2025-11-24 20:37:28] 2025-11-24 19:36:53,045 | INFO     | PanDA job id: 6895336362
[2025-11-24 20:37:28] 2025-11-24 19:36:53,045 | INFO     | task id: 47556137
[2025-11-24 20:37:28] 2025-11-24 19:36:53,045 | INFO     | errors: (none)
[2025-11-24 20:37:28] 2025-11-24 19:36:53,045 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 20:37:28] 2025-11-24 19:36:53,045 | INFO     | pilot state: finished 
[2025-11-24 20:37:28] 2025-11-24 19:36:53,045 | INFO     | transexitcode: 0
[2025-11-24 20:37:28] 2025-11-24 19:36:53,045 | INFO     | exeerrorcode: 0
[2025-11-24 20:37:28] 2025-11-24 19:36:53,046 | INFO     | exeerrordiag: 
[2025-11-24 20:37:28] 2025-11-24 19:36:53,046 | INFO     | exitcode: 0
[2025-11-24 20:37:28] 2025-11-24 19:36:53,046 | INFO     | exitmsg: OK
[2025-11-24 20:37:28] 2025-11-24 19:36:53,046 | INFO     | cpuconsumptiontime: 270958 s
[2025-11-24 20:37:28] 2025-11-24 19:36:53,046 | INFO     | nevents: 1000
[2025-11-24 20:37:28] 2025-11-24 19:36:53,046 | INFO     | neventsw: 0
[2025-11-24 20:37:28] 2025-11-24 19:36:53,046 | INFO     | pid: 3733708
[2025-11-24 20:37:28] 2025-11-24 19:36:53,046 | INFO     | pgrp: 3733708
[2025-11-24 20:37:28] 2025-11-24 19:36:53,046 | INFO     | corecount: 8
[2025-11-24 20:37:28] 2025-11-24 19:36:53,046 | INFO     | event service: False
[2025-11-24 20:37:28] 2025-11-24 19:36:53,047 | INFO     | sizes: {0: 2298587, 1: 2298671, 2: 2298842, 12: 2298870, 23: 2298898, 34: 2298926, 45: 2299082, 46: 2299372, 55: 2299400, 55078: 2350095, 55085: 2359896, 55086: 23
[2025-11-24 20:37:28] 2025-11-24 19:36:53,047 | INFO     | --------------------------------------------------
[2025-11-24 20:37:28] 2025-11-24 19:36:53,047 | INFO     | 
[2025-11-24 20:37:28] 2025-11-24 19:36:53,047 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/12
[2025-11-24 20:37:28] 2025-11-24 19:36:53,331 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 20:37:28] 2025-11-24 19:36:53,332 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 20:37:28] 2025-11-24 19:36:53,332 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 20:37:28] 2025-11-24 19:36:53,332 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 20:37:28] 2025-11-24 19:36:53,332 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 20:37:28] 2025-11-24 19:36:53,332 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 20:37:28] 2025-11-24 19:36:53,332 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 20:37:28] 2025-11-24 19:36:53,332 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 20:37:28] 2025-11-24 19:36:53,332 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 20:37:28] 2025-11-24 19:36:53,332 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 20:37:28] 2025-11-24 19:36:53,333 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 20:37:28] 2025-11-24 19:36:53,333 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 20:37:28] 2025-11-24 19:36:53,333 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 20:37:28] 2025-11-24 19:36:53,333 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 20:37:28] 2025-11-24 19:36:53,333 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 20:37:28] 2025-11-24 19:36:53,333 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 20:37:28] 2025-11-24 19:36:53,333 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 20:37:28] 2025-11-24 19:36:53,333 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 20:37:28] 2025-11-24 19:36:53,333 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 20:37:28] 2025-11-24 19:36:53,333 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 20:37:28] 2025-11-24 19:36:53,334 | INFO     | job 6895336362 has completed (purged errors)
[2025-11-24 20:37:28] 2025-11-24 19:36:53,334 | INFO     | overall cleanup function is called
[2025-11-24 20:37:28] 2025-11-24 19:36:54,374 | INFO     | --- collectZombieJob: --- 10, [3733708]
[2025-11-24 20:37:28] 2025-11-24 19:36:54,374 | INFO     | zombie collector waiting for pid 3733708
[2025-11-24 20:37:28] 2025-11-24 19:36:54,374 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 20:37:28] 2025-11-24 19:36:54,374 | INFO     | collected zombie processes
[2025-11-24 20:37:28] 2025-11-24 19:36:54,374 | INFO     | will attempt to kill all subprocesses of pid=3733708
[2025-11-24 20:37:28] 2025-11-24 19:36:55,717 | INFO     | process IDs to be killed: [3733708] (in reverse order)
[2025-11-24 20:37:28] 2025-11-24 19:36:58,590 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 20:37:28] 2025-11-24 19:36:58,590 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 20:37:28] 2025-11-24 19:36:58,635 | INFO     | did not find any defunct processes belonging to 3733708
[2025-11-24 20:37:28] 2025-11-24 19:36:58,677 | INFO     | did not find any defunct processes belonging to 3733708
[2025-11-24 20:37:28] 2025-11-24 19:36:58,715 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 20:37:28] 2025-11-24 19:36:58,715 | INFO     | ready for new job
[2025-11-24 20:37:28] 2025-11-24 19:36:58,716 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 20:37:28] 2025-11-24 19:36:58,725 | INFO     | ***************************************
[2025-11-24 20:37:28] 2025-11-24 19:36:58,725 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 20:37:28] 2025-11-24 19:36:58,725 | INFO     | ***************************************
[2025-11-24 20:37:28] 2025-11-24 19:36:58,726 | INFO     | 
[2025-11-24 20:37:28] 2025-11-24 19:36:58,757 | INFO     | architecture information:
[2025-11-24 20:37:28] 2025-11-24 19:36:58,771 | INFO     | executing command: cat /etc/os-release
[2025-11-24 20:37:28] 2025-11-24 19:36:58,992 | INFO     | cat /etc/os-release:
[2025-11-24 20:37:28] NAME="CentOS Linux"
[2025-11-24 20:37:28] VERSION="7 (Core)"
[2025-11-24 20:37:28] ID="centos"
[2025-11-24 20:37:28] ID_LIKE="rhel fedora"
[2025-11-24 20:37:28] VERSION_ID="7"
[2025-11-24 20:37:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 20:37:28] ANSI_COLOR="0;31"
[2025-11-24 20:37:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 20:37:28] HOME_URL="https://www.centos.org/"
[2025-11-24 20:37:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 20:37:28] 
[2025-11-24 20:37:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 20:37:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 20:37:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 20:37:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 20:37:28] 
[2025-11-24 20:37:28] 2025-11-24 19:36:58,992 | INFO     | ***************************************
[2025-11-24 20:37:28] 2025-11-24 19:36:59,495 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/12
[2025-11-24 20:37:28] 2025-11-24 19:36:59,771 | INFO     | sufficient remaining disk space (81777393664 B)
[2025-11-24 20:37:28] 2025-11-24 19:36:59,772 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 20:37:28] 2025-11-24 19:36:59,772 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 20:37:28] 2025-11-24 19:36:59,772 | INFO     | update_server=False
[2025-11-24 20:37:28] 2025-11-24 19:36:59,772 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 20:37:28] 2025-11-24 19:36:59,775 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 20:37:28] 2025-11-24 19:36:59,775 | INFO     | aborting loop
[2025-11-24 20:37:28] 2025-11-24 19:37:00,247 | INFO     | all data control threads have been joined
[2025-11-24 20:37:28] 2025-11-24 19:37:00,435 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 20:37:28] 2025-11-24 19:37:00,615 | INFO     | all payload control threads have been joined
[2025-11-24 20:37:28] 2025-11-24 19:37:00,779 | INFO     | [job] retrieve thread has finished
[2025-11-24 20:37:28] 2025-11-24 19:37:00,783 | INFO     | [job] job monitor thread has finished
[2025-11-24 20:37:28] 2025-11-24 19:37:00,831 | INFO     | [data] copytool_in thread has finished
[2025-11-24 20:37:28] 2025-11-24 19:37:00,911 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 20:37:28] 2025-11-24 19:37:01,155 | INFO     | all job control threads have been joined
[2025-11-24 20:37:28] 2025-11-24 19:37:01,255 | INFO     | [data] control thread has finished
[2025-11-24 20:37:28] 2025-11-24 19:37:01,387 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 20:37:28] 2025-11-24 19:37:01,619 | INFO     | [payload] control thread has finished
[2025-11-24 20:37:28] 2025-11-24 19:37:01,691 | INFO     | [payload] validate_post thread has finished
[2025-11-24 20:37:28] 2025-11-24 19:37:01,755 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 20:37:28] 2025-11-24 19:37:01,815 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 20:37:28] 2025-11-24 19:37:02,015 | INFO     | [payload] failed_post thread has finished
[2025-11-24 20:37:28] 2025-11-24 19:37:02,083 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 20:37:28] 2025-11-24 19:37:02,159 | INFO     | [job] control thread has finished
[2025-11-24 20:37:28] 2025-11-24 19:37:02,199 | INFO     | [job] validate thread has finished
[2025-11-24 20:37:28] 2025-11-24 19:37:02,447 | INFO     | [data] copytool_out thread has finished
[2025-11-24 20:37:28] 2025-11-24 19:37:02,603 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 20:37:28] 2025-11-24 19:37:03,091 | INFO     | [job] queue monitor thread has finished
[2025-11-24 20:37:28] 2025-11-24 19:37:06,619 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 20:37:28] 2025-11-24 19:37:13,795 | INFO     | [monitor] cgroup control has ended
[2025-11-24 20:37:28] 2025-11-24 19:37:15,691 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140077878810432)>', '<ExcThread(monitor, started 140076919019264)>']
[2025-11-24 20:37:28] 2025-11-24 19:37:20,719 | INFO     | all workflow threads have been joined
[2025-11-24 20:37:28] 2025-11-24 19:37:20,723 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 20:37:28] 2025-11-24 19:37:20,723 | INFO     | traces error code: 0
[2025-11-24 20:37:28] 2025-11-24 19:37:20,723 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 20:37:28] 2025-11-24 19:37:25,598 | INFO     | PID=3700479 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 20:37:28] 2025-11-24 19:37:25,599 | INFO     | .. there are 25 such processes running
[2025-11-24 20:37:28] 2025-11-24 19:37:25,600 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 20:37:28] 2025-11-24 19:37:25,600 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 20:37:28] 2025-11-24 19:37:25,600 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 20:37:28] 2025-11-24 19:37:25,600 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 20:37:28] 2025-11-24 19:37:25,600 | INFO     | [monitor] control thread has ended
[2025-11-24 20:37:28] 2025-11-24 19:37:25,803 [wrapper] ==== pilot stdout END ====
[2025-11-24 20:37:28] 2025-11-24 19:37:25,875 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 20:37:28] 2025-11-24 19:37:25,939 [wrapper] pilotpid: 3700479
[2025-11-24 20:37:28] 2025-11-24 19:37:26,015 [wrapper] Pilot exit status: 0
[2025-11-24 20:37:28] 2025-11-24 19:37:26,299 [wrapper] pandaids: 6895336362
[2025-11-24 20:37:28] 2025-11-24 19:37:26,555 [wrapper] cleanup supervisor_pilot 1953675 3700480
[2025-11-24 20:37:28] 2025-11-24 19:37:26,583 [wrapper] Test setup, not cleaning
[2025-11-24 20:37:28] 2025-11-24 19:37:26,594 [wrapper] apfmon messages muted
[2025-11-24 20:37:28] 2025-11-24 19:37:26,639 [wrapper] ==== wrapper stdout END ====
[2025-11-24 20:37:28] 2025-11-24 19:37:26,707 [wrapper] ==== wrapper stderr END ====
[2025-11-24 20:37:28]  *** Error codes and diagnostics ***
[2025-11-24 20:37:28]     "exeErrorCode": 0,
[2025-11-24 20:37:28]     "exeErrorDiag": "",
[2025-11-24 20:37:28]     "pilotErrorCode": 0,
[2025-11-24 20:37:28]     "pilotErrorDiag": "",
[2025-11-24 20:37:28]  *** Listing of results directory ***
[2025-11-24 20:37:28] insgesamt 1305820
[2025-11-24 20:37:28] -rw-r--r-- 1 boinc boinc    576529 Nov 22 06:12 pilot3.tar.gz
[2025-11-24 20:37:28] -rw-r--r-- 1 boinc boinc      5112 Nov 22 06:27 queuedata.json
[2025-11-24 20:37:28] -rwx------ 1 boinc boinc     36292 Nov 22 06:29 runpilot2-wrapper.sh
[2025-11-24 20:37:28] -rw-r--r-- 1 boinc boinc       100 Nov 24 05:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 20:37:28] -rwxr-xr-x 1 boinc boinc      7986 Nov 24 05:13 run_atlas
[2025-11-24 20:37:28] -rw-r--r-- 1 boinc boinc       105 Nov 24 05:13 job.xml
[2025-11-24 20:37:28] -rw-r--r-- 2 boinc boinc     15847 Nov 24 05:13 start_atlas.sh
[2025-11-24 20:37:28] drwxrwx--x 2 boinc boinc      4096 Nov 24 05:13 shared
[2025-11-24 20:37:28] -rw-r--r-- 2 boinc boinc    590100 Nov 24 05:13 input.tar.gz
[2025-11-24 20:37:28] -rw-r--r-- 1 boinc boinc      6666 Nov 24 05:13 init_data.xml
[2025-11-24 20:37:28] -rw-r--r-- 2 boinc boinc 410665357 Nov 24 05:13 EVNT.47483658._000277.pool.root.1
[2025-11-24 20:37:28] -rw-r--r-- 1 boinc boinc         0 Nov 24 05:13 boinc_lockfile
[2025-11-24 20:37:28] -rw-r--r-- 1 boinc boinc      2785 Nov 24 05:13 pandaJob.out
[2025-11-24 20:37:28] -rw------- 1 boinc boinc        46 Nov 24 05:13 setup.sh.local
[2025-11-24 20:37:28] -rw------- 1 boinc boinc    989786 Nov 24 05:15 agis_schedconf.cvmfs.json
[2025-11-24 20:37:28] drwx------ 5 boinc boinc      4096 Nov 24 05:15 pilot3
[2025-11-24 20:37:28] -rw-r--r-- 1 boinc boinc       533 Nov 24 20:03 boinc_task_state.xml
[2025-11-24 20:37:28] -rw------- 1 boinc boinc 904056282 Nov 24 20:34 HITS.47556137._002732.pool.root.1
[2025-11-24 20:37:28] -rw------- 1 boinc boinc      1050 Nov 24 20:35 memory_monitor_summary.json
[2025-11-24 20:37:28] -rw------- 1 boinc boinc   1516227 Nov 24 20:35 agis_ddmendpoints.agis.ALL.json
[2025-11-24 20:37:28] -rw------- 1 boinc boinc   2066780 Nov 24 20:35 log.47556137._002732.job.log.tgz.1
[2025-11-24 20:37:28] -rw------- 1 boinc boinc      8580 Nov 24 20:36 heartbeat.json
[2025-11-24 20:37:28] -rw------- 1 boinc boinc       823 Nov 24 20:37 pilotlog.txt
[2025-11-24 20:37:28] -rw------- 1 boinc boinc        95 Nov 24 20:37 pilot_heartbeat.json
[2025-11-24 20:37:28] -rw-r--r-- 1 boinc boinc      8192 Nov 24 20:37 boinc_mmap_file
[2025-11-24 20:37:28] -rw------- 1 boinc boinc   7190287 Nov 24 20:37 log.47556137._002732.job.log.1
[2025-11-24 20:37:28] -rw-r--r-- 1 boinc boinc        29 Nov 24 20:37 wrapper_checkpoint.txt
[2025-11-24 20:37:28] -rw------- 1 boinc boinc       353 Nov 24 20:37 output.list
[2025-11-24 20:37:28] -rw-r--r-- 1 boinc boinc       620 Nov 24 20:37 runtime_log
[2025-11-24 20:37:28] -rw------- 1 boinc boinc   9277440 Nov 24 20:37 result.tar.gz
[2025-11-24 20:37:28] -rw-r--r-- 1 boinc boinc      9473 Nov 24 20:37 runtime_log.err
[2025-11-24 20:37:28] -rw------- 1 boinc boinc       675 Nov 24 20:37 FyhNDmPMvg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmlzJKDm7Zewwm.diag
[2025-11-24 20:37:28] -rw-r--r-- 1 boinc boinc     21545 Nov 24 20:37 stderr.txt
[2025-11-24 20:37:28] HITS file was successfully produced:
[2025-11-24 20:37:28] -rw------- 1 boinc boinc 904056282 Nov 24 20:34 shared/HITS.pool.root.1
[2025-11-24 20:37:28]  *** Contents of shared directory: ***
[2025-11-24 20:37:28] insgesamt 1293576
[2025-11-24 20:37:28] -rw-r--r-- 2 boinc boinc     15847 Nov 24 05:13 start_atlas.sh
[2025-11-24 20:37:28] -rw-r--r-- 2 boinc boinc    590100 Nov 24 05:13 input.tar.gz
[2025-11-24 20:37:28] -rw-r--r-- 2 boinc boinc 410665357 Nov 24 05:13 ATLAS.root_0
[2025-11-24 20:37:28] -rw------- 1 boinc boinc 904056282 Nov 24 20:34 HITS.pool.root.1
[2025-11-24 20:37:28] -rw------- 1 boinc boinc   9277440 Nov 24 20:37 result.tar.gz
20:37:29 (3686055): run_atlas exited; CPU time 273774.060323
20:37:29 (3686055): called boinc_finish(0)

</stderr_txt>
]]>

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