Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
02:23:20 (613089): wrapper (7.7.26015): starting
02:23:20 (613089): wrapper: running run_atlas (--nthreads 3)
[2025-11-24 02:23:20] Arguments: --nthreads 3
[2025-11-24 02:23:20] Threads: 3
[2025-11-24 02:23:20] Checking for CVMFS
[2025-11-24 02:23:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 02:23:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 02:23:20] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 02:23:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 02:23:21] 2.9.2.0 154488 98 59524 153228 2 88 34933889 36864001 0 130560 0 1377260 100.000 2599 2386 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-24 02:23:21] CVMFS is ok
[2025-11-24 02:23:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 02:23:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 02:23:21] Further information can be found at the LHC@home message board.
[2025-11-24 02:23:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 02:23:21] Checking for apptainer binary...
[2025-11-24 02:23:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 02:23:21] Running /usr/bin/apptainer --version
[2025-11-24 02:23:21] apptainer version 1.4.1-1.1
[2025-11-24 02:23:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 02:23:21] thA335
[2025-11-24 02:23:21] apptainer works
[2025-11-24 02:23:21] Set ATHENA_PROC_NUMBER=3
[2025-11-24 02:23:21] Set ATHENA_CORE_NUMBER=3
[2025-11-24 02:23:21] Starting ATLAS job with PandaID=6895354809
[2025-11-24 02:23:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 02:27:38]  *** The last 200 lines of the pilot log: ***
[2025-11-24 02:27:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 02:27:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 02:27:38] 
[2025-11-24 02:27:38] 2025-11-24 01:26:46,083 | INFO     | ***************************************
[2025-11-24 02:27:38] 2025-11-24 01:26:46,586 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-24 02:27:38] 2025-11-24 01:26:46,600 | INFO     | sufficient remaining disk space (826688929792 B)
[2025-11-24 02:27:38] 2025-11-24 01:26:46,600 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 02:27:38] 2025-11-24 01:26:46,600 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 02:27:38] 2025-11-24 01:26:46,600 | INFO     | update_server=False
[2025-11-24 02:27:38] 2025-11-24 01:26:46,600 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 02:27:38] 2025-11-24 01:26:46,600 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 02:27:38] 2025-11-24 01:26:46,601 | INFO     | aborting loop
[2025-11-24 02:27:38] 2025-11-24 01:26:46,601 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 02:27:38] 2025-11-24 01:26:46,607 | INFO     | all data control threads have been joined
[2025-11-24 02:27:38] 2025-11-24 01:26:46,905 | INFO     | all job control threads have been joined
[2025-11-24 02:27:38] 2025-11-24 01:26:47,288 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 02:27:38] 2025-11-24 01:26:47,606 | INFO     | [job] job monitor thread has finished
[2025-11-24 02:27:38] 2025-11-24 01:26:47,607 | INFO     | [job] retrieve thread has finished
[2025-11-24 02:27:38] 2025-11-24 01:26:47,607 | INFO     | [job] queue monitor thread has finished
[2025-11-24 02:27:38] 2025-11-24 01:26:47,608 | INFO     | [data] control thread has finished
[2025-11-24 02:27:38] 2025-11-24 01:26:47,653 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 02:27:38] 2025-11-24 01:26:47,834 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 02:27:38] 2025-11-24 01:26:47,911 | INFO     | [job] control thread has finished
[2025-11-24 02:27:38] 2025-11-24 01:26:47,935 | INFO     | [data] copytool_in thread has finished
[2025-11-24 02:27:38] 2025-11-24 01:26:48,058 | INFO     | all payload control threads have been joined
[2025-11-24 02:27:38] 2025-11-24 01:26:48,422 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 02:27:38] 2025-11-24 01:26:48,643 | INFO     | [payload] validate_post thread has finished
[2025-11-24 02:27:38] 2025-11-24 01:26:49,018 | INFO     | [job] validate thread has finished
[2025-11-24 02:27:38] 2025-11-24 01:26:49,065 | INFO     | [payload] control thread has finished
[2025-11-24 02:27:38] 2025-11-24 01:26:49,093 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 02:27:38] 2025-11-24 01:26:49,181 | INFO     | [payload] failed_post thread has finished
[2025-11-24 02:27:38] 2025-11-24 01:26:49,294 | INFO     | [data] copytool_out thread has finished
[2025-11-24 02:27:38] 2025-11-24 01:26:49,701 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 02:27:38] 2025-11-24 01:26:53,708 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 02:27:38] 2025-11-24 01:27:17,214 | INFO     | PID=616830 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-24 02:27:38] 2025-11-24 01:27:17,214 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 02:27:38] 2025-11-24 01:27:17,214 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 02:27:38] 2025-11-24 01:27:17,214 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 02:27:38] 2025-11-24 01:27:32,288 | INFO     | [monitor] cgroup control has ended
[2025-11-24 02:27:38] 2025-11-24 01:27:33,363 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139899456190272)>', '<ExcThread(monitor, started 139899174881024)>']
[2025-11-24 02:27:38] 2025-11-24 01:27:34,305 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 02:27:38] 2025-11-24 01:27:34,305 | INFO     | [monitor] control thread has ended
[2025-11-24 02:27:38] 2025-11-24 01:27:38,389 | INFO     | all workflow threads have been joined
[2025-11-24 02:27:38] 2025-11-24 01:27:38,390 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 02:27:38] 2025-11-24 01:27:38,390 | INFO     | traces error code: 0
[2025-11-24 02:27:38] 2025-11-24 01:27:38,391 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 02:27:38] 2025-11-24 01:27:38,438 [wrapper] ==== pilot stdout END ====
[2025-11-24 02:27:38] 2025-11-24 01:27:38,442 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 02:27:38] 2025-11-24 01:27:38,445 [wrapper] pilotpid: 616830
[2025-11-24 02:27:38] 2025-11-24 01:27:38,448 [wrapper] Pilot exit status: 0
[2025-11-24 02:27:38] 2025-11-24 01:27:38,455 [wrapper] pandaids: 6895354809
[2025-11-24 02:27:38] 2025-11-24 01:27:38,472 [wrapper] cleanup supervisor_pilot  616836 616831
[2025-11-24 02:27:38] 2025-11-24 01:27:38,475 [wrapper] Test setup, not cleaning
[2025-11-24 02:27:38] 2025-11-24 01:27:38,477 [wrapper] apfmon messages muted
[2025-11-24 02:27:38] 2025-11-24 01:27:38,480 [wrapper] ==== wrapper stdout END ====
[2025-11-24 02:27:38] 2025-11-24 01:27:38,482 [wrapper] ==== wrapper stderr END ====
[2025-11-24 02:27:38]  *** Error codes and diagnostics ***
[2025-11-24 02:27:38]     "exeErrorCode": 65,
[2025-11-24 02:27:38]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-24 02:27:38]     "pilotErrorCode": 1305,
[2025-11-24 02:27:38]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-24 02:27:38]  *** Listing of results directory ***
[2025-11-24 02:27:38] total 404732
[2025-11-24 02:27:38] -rw-r--r-- 1 boinc boinc    576529 Nov 23 06:21 pilot3.tar.gz
[2025-11-24 02:27:38] -rw-r--r-- 1 boinc boinc      5112 Nov 23 06:37 queuedata.json
[2025-11-24 02:27:38] -rwx------ 1 boinc boinc     36292 Nov 23 06:40 runpilot2-wrapper.sh
[2025-11-24 02:27:38] -rw-r--r-- 1 boinc boinc       100 Nov 24 02:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 02:27:38] -rwxr-xr-x 1 boinc boinc      7986 Nov 24 02:23 run_atlas
[2025-11-24 02:27:38] -rw-r--r-- 1 boinc boinc       105 Nov 24 02:23 job.xml
[2025-11-24 02:27:38] -rw-r--r-- 2 boinc boinc 410250455 Nov 24 02:23 EVNT.47483658._000635.pool.root.1
[2025-11-24 02:27:38] -rw-r--r-- 2 boinc boinc    590102 Nov 24 02:23 input.tar.gz
[2025-11-24 02:27:38] -rw-r--r-- 2 boinc boinc     15847 Nov 24 02:23 start_atlas.sh
[2025-11-24 02:27:38] drwxrwx--x 2 boinc boinc      4096 Nov 24 02:23 shared
[2025-11-24 02:27:38] -rw-r--r-- 1 boinc boinc         0 Nov 24 02:23 boinc_setup_complete
[2025-11-24 02:27:38] -rw-r--r-- 1 boinc boinc      6195 Nov 24 02:23 init_data.xml
[2025-11-24 02:27:38] -rw-r--r-- 1 boinc boinc         0 Nov 24 02:23 boinc_lockfile
[2025-11-24 02:27:38] -rw-r--r-- 1 boinc boinc      2786 Nov 24 02:23 pandaJob.out
[2025-11-24 02:27:38] -rw------- 1 boinc boinc    989786 Nov 24 02:23 agis_schedconf.cvmfs.json
[2025-11-24 02:27:38] -rw------- 1 boinc boinc   1526164 Nov 24 02:23 agis_ddmendpoints.agis.ALL.json
[2025-11-24 02:27:38] drwx------ 5 boinc boinc      4096 Nov 24 02:23 pilot3
[2025-11-24 02:27:38] -rw-r--r-- 1 boinc boinc       522 Nov 24 02:24 boinc_task_state.xml
[2025-11-24 02:27:38] -rw------- 1 boinc boinc       954 Nov 24 02:24 memory_monitor_summary.json
[2025-11-24 02:27:38] -rw------- 1 boinc boinc     54304 Nov 24 02:24 log.47556137._006304.job.log.tgz.1
[2025-11-24 02:27:38] -rw------- 1 boinc boinc        95 Nov 24 02:26 pilot_heartbeat.json
[2025-11-24 02:27:38] -rw------- 1 boinc boinc      8402 Nov 24 02:26 heartbeat.json
[2025-11-24 02:27:38] -rw-r--r-- 1 boinc boinc      8192 Nov 24 02:27 boinc_mmap_file
[2025-11-24 02:27:38] -rw-r--r-- 1 boinc boinc        22 Nov 24 02:27 wrapper_checkpoint.txt
[2025-11-24 02:27:38] -rw------- 1 boinc boinc      4751 Nov 24 02:27 pilotlog.txt
[2025-11-24 02:27:38] -rw------- 1 boinc boinc     93211 Nov 24 02:27 log.47556137._006304.job.log.1
[2025-11-24 02:27:38] -rw------- 1 boinc boinc       186 Nov 24 02:27 output.list
[2025-11-24 02:27:38] -rw-r--r-- 1 boinc boinc       620 Nov 24 02:27 runtime_log
[2025-11-24 02:27:38] -rw------- 1 boinc boinc    163840 Nov 24 02:27 result.tar.gz
[2025-11-24 02:27:38] -rw-r--r-- 1 boinc boinc      8744 Nov 24 02:27 runtime_log.err
[2025-11-24 02:27:38] -rw------- 1 boinc boinc       649 Nov 24 02:27 k7oLDmk0Hh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmGgKKDmYoshdm.diag
[2025-11-24 02:27:38] -rw-r--r-- 1 boinc boinc      8464 Nov 24 02:27 stderr.txt
[2025-11-24 02:27:38] No HITS result produced
[2025-11-24 02:27:38]  *** Contents of shared directory: ***
[2025-11-24 02:27:38] total 401396
[2025-11-24 02:27:38] -rw-r--r-- 2 boinc boinc 410250455 Nov 24 02:23 ATLAS.root_0
[2025-11-24 02:27:38] -rw-r--r-- 2 boinc boinc    590102 Nov 24 02:23 input.tar.gz
[2025-11-24 02:27:38] -rw-r--r-- 2 boinc boinc     15847 Nov 24 02:23 start_atlas.sh
[2025-11-24 02:27:38] -rw------- 1 boinc boinc    163840 Nov 24 02:27 result.tar.gz
02:27:40 (613089): run_atlas exited; CPU time 31.636304
02:27:40 (613089): called boinc_finish(0)

</stderr_txt>
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