Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
03:12:57 (842443): wrapper (7.7.26015): starting
03:12:57 (842443): wrapper: running run_atlas (--nthreads 3)
[2025-11-24 03:12:57] Arguments: --nthreads 3
[2025-11-24 03:12:57] Threads: 3
[2025-11-24 03:12:57] Checking for CVMFS
[2025-11-24 03:12:57] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 03:12:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 03:12:57] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 03:12:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 03:12:57] 2.9.2.0 154488 147 62244 153228 0 88 34934179 36864001 0 130560 0 2065859 100.000 2606 2335 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-24 03:12:57] CVMFS is ok
[2025-11-24 03:12:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 03:12:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 03:12:57] Further information can be found at the LHC@home message board.
[2025-11-24 03:12:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 03:12:57] Checking for apptainer binary...
[2025-11-24 03:12:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 03:12:57] Running /usr/bin/apptainer --version
[2025-11-24 03:12:57] apptainer version 1.4.1-1.1
[2025-11-24 03:12:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 03:12:57] thA335
[2025-11-24 03:12:57] apptainer works
[2025-11-24 03:12:57] Set ATHENA_PROC_NUMBER=3
[2025-11-24 03:12:57] Set ATHENA_CORE_NUMBER=3
[2025-11-24 03:12:57] Starting ATLAS job with PandaID=6895354815
[2025-11-24 03:12:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 03:17:14]  *** The last 200 lines of the pilot log: ***
[2025-11-24 03:17:14] 2025-11-24 02:16:21,604 | INFO     | cat /etc/os-release:
[2025-11-24 03:17:14] NAME="CentOS Linux"
[2025-11-24 03:17:14] VERSION="7 (Core)"
[2025-11-24 03:17:14] ID="centos"
[2025-11-24 03:17:14] ID_LIKE="rhel fedora"
[2025-11-24 03:17:14] VERSION_ID="7"
[2025-11-24 03:17:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 03:17:14] ANSI_COLOR="0;31"
[2025-11-24 03:17:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 03:17:14] HOME_URL="https://www.centos.org/"
[2025-11-24 03:17:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 03:17:14] 
[2025-11-24 03:17:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 03:17:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 03:17:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 03:17:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 03:17:14] 
[2025-11-24 03:17:14] 2025-11-24 02:16:21,604 | INFO     | ***************************************
[2025-11-24 03:17:14] 2025-11-24 02:16:22,107 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-24 03:17:14] 2025-11-24 02:16:22,120 | INFO     | sufficient remaining disk space (827102068736 B)
[2025-11-24 03:17:14] 2025-11-24 02:16:22,121 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 03:17:14] 2025-11-24 02:16:22,121 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 03:17:14] 2025-11-24 02:16:22,121 | INFO     | update_server=False
[2025-11-24 03:17:14] 2025-11-24 02:16:22,121 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 03:17:14] 2025-11-24 02:16:22,121 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 03:17:14] 2025-11-24 02:16:22,121 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 03:17:14] 2025-11-24 02:16:22,121 | INFO     | aborting loop
[2025-11-24 03:17:14] 2025-11-24 02:16:22,334 | INFO     | all job control threads have been joined
[2025-11-24 03:17:14] 2025-11-24 02:16:22,344 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 03:17:14] 2025-11-24 02:16:23,107 | INFO     | all data control threads have been joined
[2025-11-24 03:17:14] 2025-11-24 02:16:23,126 | INFO     | [job] retrieve thread has finished
[2025-11-24 03:17:14] 2025-11-24 02:16:23,126 | INFO     | [job] queue monitor thread has finished
[2025-11-24 03:17:14] 2025-11-24 02:16:23,127 | INFO     | [job] job monitor thread has finished
[2025-11-24 03:17:14] 2025-11-24 02:16:23,288 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 03:17:14] 2025-11-24 02:16:23,340 | INFO     | [job] control thread has finished
[2025-11-24 03:17:14] 2025-11-24 02:16:23,500 | INFO     | all payload control threads have been joined
[2025-11-24 03:17:14] 2025-11-24 02:16:23,782 | INFO     | [payload] failed_post thread has finished
[2025-11-24 03:17:14] 2025-11-24 02:16:23,992 | INFO     | [data] copytool_in thread has finished
[2025-11-24 03:17:14] 2025-11-24 02:16:24,041 | INFO     | [payload] validate_post thread has finished
[2025-11-24 03:17:14] 2025-11-24 02:16:24,113 | INFO     | [data] control thread has finished
[2025-11-24 03:17:14] 2025-11-24 02:16:24,350 | INFO     | [data] copytool_out thread has finished
[2025-11-24 03:17:14] 2025-11-24 02:16:24,431 | INFO     | [job] validate thread has finished
[2025-11-24 03:17:14] 2025-11-24 02:16:24,506 | INFO     | [payload] control thread has finished
[2025-11-24 03:17:14] 2025-11-24 02:16:24,530 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 03:17:14] 2025-11-24 02:16:24,589 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 03:17:14] 2025-11-24 02:16:24,620 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 03:17:14] 2025-11-24 02:16:25,092 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 03:17:14] 2025-11-24 02:16:29,099 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 03:17:14] 2025-11-24 02:16:52,690 | INFO     | PID=846183 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-24 03:17:14] 2025-11-24 02:16:52,690 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 03:17:14] 2025-11-24 02:16:52,691 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 03:17:14] 2025-11-24 02:16:52,691 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 03:17:14] 2025-11-24 02:17:07,765 | INFO     | [monitor] cgroup control has ended
[2025-11-24 03:17:14] 2025-11-24 02:17:08,880 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140552414021440)>', '<ExcThread(monitor, started 140551789733632)>']
[2025-11-24 03:17:14] 2025-11-24 02:17:09,781 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 03:17:14] 2025-11-24 02:17:09,782 | INFO     | [monitor] control thread has ended
[2025-11-24 03:17:14] 2025-11-24 02:17:13,905 | INFO     | all workflow threads have been joined
[2025-11-24 03:17:14] 2025-11-24 02:17:13,906 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 03:17:14] 2025-11-24 02:17:13,906 | INFO     | traces error code: 0
[2025-11-24 03:17:14] 2025-11-24 02:17:13,907 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 03:17:14] 2025-11-24 02:17:13,949 [wrapper] ==== pilot stdout END ====
[2025-11-24 03:17:14] 2025-11-24 02:17:13,952 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 03:17:14] 2025-11-24 02:17:13,955 [wrapper] pilotpid: 846183
[2025-11-24 03:17:14] 2025-11-24 02:17:13,958 [wrapper] Pilot exit status: 0
[2025-11-24 03:17:14] 2025-11-24 02:17:13,965 [wrapper] pandaids: 6895354815
[2025-11-24 03:17:14] 2025-11-24 02:17:13,981 [wrapper] cleanup supervisor_pilot  846189 846184
[2025-11-24 03:17:14] 2025-11-24 02:17:13,984 [wrapper] Test setup, not cleaning
[2025-11-24 03:17:14] 2025-11-24 02:17:13,987 [wrapper] apfmon messages muted
[2025-11-24 03:17:14] 2025-11-24 02:17:13,990 [wrapper] ==== wrapper stdout END ====
[2025-11-24 03:17:14] 2025-11-24 02:17:13,992 [wrapper] ==== wrapper stderr END ====
[2025-11-24 03:17:14]  *** Error codes and diagnostics ***
[2025-11-24 03:17:14]     "exeErrorCode": 65,
[2025-11-24 03:17:14]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-24 03:17:14]     "pilotErrorCode": 1305,
[2025-11-24 03:17:14]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-24 03:17:14]  *** Listing of results directory ***
[2025-11-24 03:17:14] total 404732
[2025-11-24 03:17:14] -rw-r--r-- 1 boinc boinc    576529 Nov 23 06:21 pilot3.tar.gz
[2025-11-24 03:17:14] -rw-r--r-- 1 boinc boinc      5112 Nov 23 06:37 queuedata.json
[2025-11-24 03:17:14] -rwx------ 1 boinc boinc     36292 Nov 23 06:39 runpilot2-wrapper.sh
[2025-11-24 03:17:14] -rw-r--r-- 1 boinc boinc       100 Nov 24 03:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 03:17:14] -rwxr-xr-x 1 boinc boinc      7986 Nov 24 03:12 run_atlas
[2025-11-24 03:17:14] -rw-r--r-- 1 boinc boinc       105 Nov 24 03:12 job.xml
[2025-11-24 03:17:14] -rw-r--r-- 2 boinc boinc 410250455 Nov 24 03:12 EVNT.47483658._000635.pool.root.1
[2025-11-24 03:17:14] -rw-r--r-- 2 boinc boinc    590102 Nov 24 03:12 input.tar.gz
[2025-11-24 03:17:14] -rw-r--r-- 2 boinc boinc     15847 Nov 24 03:12 start_atlas.sh
[2025-11-24 03:17:14] drwxrwx--x 2 boinc boinc      4096 Nov 24 03:12 shared
[2025-11-24 03:17:14] -rw-r--r-- 1 boinc boinc         0 Nov 24 03:12 boinc_setup_complete
[2025-11-24 03:17:14] -rw-r--r-- 1 boinc boinc      6195 Nov 24 03:12 init_data.xml
[2025-11-24 03:17:14] -rw-r--r-- 1 boinc boinc         0 Nov 24 03:12 boinc_lockfile
[2025-11-24 03:17:14] -rw-r--r-- 1 boinc boinc      2785 Nov 24 03:12 pandaJob.out
[2025-11-24 03:17:14] -rw------- 1 boinc boinc    989786 Nov 24 03:13 agis_schedconf.cvmfs.json
[2025-11-24 03:17:14] -rw------- 1 boinc boinc   1526164 Nov 24 03:13 agis_ddmendpoints.agis.ALL.json
[2025-11-24 03:17:14] drwx------ 5 boinc boinc      4096 Nov 24 03:13 pilot3
[2025-11-24 03:17:14] -rw-r--r-- 1 boinc boinc       522 Nov 24 03:13 boinc_task_state.xml
[2025-11-24 03:17:14] -rw------- 1 boinc boinc       986 Nov 24 03:14 memory_monitor_summary.json
[2025-11-24 03:17:14] -rw------- 1 boinc boinc     56082 Nov 24 03:14 log.47556137._006310.job.log.tgz.1
[2025-11-24 03:17:14] -rw------- 1 boinc boinc        95 Nov 24 03:16 pilot_heartbeat.json
[2025-11-24 03:17:14] -rw------- 1 boinc boinc      8385 Nov 24 03:16 heartbeat.json
[2025-11-24 03:17:14] -rw-r--r-- 1 boinc boinc        22 Nov 24 03:17 wrapper_checkpoint.txt
[2025-11-24 03:17:14] -rw-r--r-- 1 boinc boinc      8192 Nov 24 03:17 boinc_mmap_file
[2025-11-24 03:17:14] -rw------- 1 boinc boinc      4751 Nov 24 03:17 pilotlog.txt
[2025-11-24 03:17:14] -rw------- 1 boinc boinc     92049 Nov 24 03:17 log.47556137._006310.job.log.1
[2025-11-24 03:17:14] -rw------- 1 boinc boinc       186 Nov 24 03:17 output.list
[2025-11-24 03:17:14] -rw-r--r-- 1 boinc boinc       620 Nov 24 03:17 runtime_log
[2025-11-24 03:17:14] -rw------- 1 boinc boinc    163840 Nov 24 03:17 result.tar.gz
[2025-11-24 03:17:14] -rw-r--r-- 1 boinc boinc      8744 Nov 24 03:17 runtime_log.err
[2025-11-24 03:17:14] -rw------- 1 boinc boinc       649 Nov 24 03:17 cVuNDmQ0Hh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmCgKKDm9wPifm.diag
[2025-11-24 03:17:14] -rw-r--r-- 1 boinc boinc      9156 Nov 24 03:17 stderr.txt
[2025-11-24 03:17:14] No HITS result produced
[2025-11-24 03:17:14]  *** Contents of shared directory: ***
[2025-11-24 03:17:14] total 401396
[2025-11-24 03:17:14] -rw-r--r-- 2 boinc boinc 410250455 Nov 24 03:12 ATLAS.root_0
[2025-11-24 03:17:14] -rw-r--r-- 2 boinc boinc    590102 Nov 24 03:12 input.tar.gz
[2025-11-24 03:17:14] -rw-r--r-- 2 boinc boinc     15847 Nov 24 03:12 start_atlas.sh
[2025-11-24 03:17:14] -rw------- 1 boinc boinc    163840 Nov 24 03:17 result.tar.gz
03:17:16 (842443): run_atlas exited; CPU time 30.591163
03:17:16 (842443): called boinc_finish(0)

</stderr_txt>
]]>

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