Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
02:14:37 (571454): wrapper (7.7.26015): starting
02:14:37 (571454): wrapper: running run_atlas (--nthreads 3)
[2025-11-24 02:14:37] Arguments: --nthreads 3
[2025-11-24 02:14:37] Threads: 3
[2025-11-24 02:14:37] Checking for CVMFS
[2025-11-24 02:14:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 02:14:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 02:14:37] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 02:14:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 02:14:37] 2.9.2.0 154488 89 60792 153227 2 88 34930972 36864001 0 130560 0 1252067 100.000 1306 1234 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-24 02:14:37] CVMFS is ok
[2025-11-24 02:14:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 02:14:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 02:14:37] Further information can be found at the LHC@home message board.
[2025-11-24 02:14:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 02:14:37] Checking for apptainer binary...
[2025-11-24 02:14:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 02:14:37] Running /usr/bin/apptainer --version
[2025-11-24 02:14:38] apptainer version 1.4.1-1.1
[2025-11-24 02:14:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 02:14:38] thA335
[2025-11-24 02:14:38] apptainer works
[2025-11-24 02:14:38] Set ATHENA_PROC_NUMBER=3
[2025-11-24 02:14:38] Set ATHENA_CORE_NUMBER=3
[2025-11-24 02:14:38] Starting ATLAS job with PandaID=6895335654
[2025-11-24 02:14:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 02:18:55]  *** The last 200 lines of the pilot log: ***
[2025-11-24 02:18:55] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 02:18:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 02:18:55] 
[2025-11-24 02:18:55] 2025-11-24 01:18:02,061 | INFO     | ***************************************
[2025-11-24 02:18:55] 2025-11-24 01:18:02,565 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-24 02:18:55] 2025-11-24 01:18:02,579 | INFO     | sufficient remaining disk space (827105214464 B)
[2025-11-24 02:18:55] 2025-11-24 01:18:02,579 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 02:18:55] 2025-11-24 01:18:02,579 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 02:18:55] 2025-11-24 01:18:02,579 | INFO     | update_server=False
[2025-11-24 02:18:55] 2025-11-24 01:18:02,579 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 02:18:55] 2025-11-24 01:18:02,580 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 02:18:55] 2025-11-24 01:18:02,580 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 02:18:55] 2025-11-24 01:18:02,580 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 02:18:55] 2025-11-24 01:18:02,769 | INFO     | all data control threads have been joined
[2025-11-24 02:18:55] 2025-11-24 01:18:03,274 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 02:18:55] 2025-11-24 01:18:03,274 | INFO     | aborting loop
[2025-11-24 02:18:55] 2025-11-24 01:18:03,585 | INFO     | [job] retrieve thread has finished
[2025-11-24 02:18:55] 2025-11-24 01:18:03,586 | INFO     | [job] queue monitor thread has finished
[2025-11-24 02:18:55] 2025-11-24 01:18:03,672 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 02:18:55] 2025-11-24 01:18:03,773 | INFO     | all payload control threads have been joined
[2025-11-24 02:18:55] 2025-11-24 01:18:03,775 | INFO     | [data] control thread has finished
[2025-11-24 02:18:55] 2025-11-24 01:18:04,166 | INFO     | all job control threads have been joined
[2025-11-24 02:18:55] 2025-11-24 01:18:04,272 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 02:18:55] 2025-11-24 01:18:04,280 | INFO     | [job] job monitor thread has finished
[2025-11-24 02:18:55] 2025-11-24 01:18:04,304 | INFO     | [payload] validate_post thread has finished
[2025-11-24 02:18:55] 2025-11-24 01:18:04,586 | INFO     | [data] copytool_out thread has finished
[2025-11-24 02:18:55] 2025-11-24 01:18:04,779 | INFO     | [payload] control thread has finished
[2025-11-24 02:18:55] 2025-11-24 01:18:04,809 | INFO     | [job] validate thread has finished
[2025-11-24 02:18:55] 2025-11-24 01:18:04,809 | INFO     | [data] copytool_in thread has finished
[2025-11-24 02:18:55] 2025-11-24 01:18:04,886 | INFO     | [payload] failed_post thread has finished
[2025-11-24 02:18:55] 2025-11-24 01:18:04,919 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 02:18:55] 2025-11-24 01:18:04,968 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 02:18:55] 2025-11-24 01:18:05,172 | INFO     | [job] control thread has finished
[2025-11-24 02:18:55] 2025-11-24 01:18:06,587 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 02:18:55] 2025-11-24 01:18:32,466 | INFO     | PID=575184 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-24 02:18:55] 2025-11-24 01:18:32,466 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 02:18:55] 2025-11-24 01:18:32,467 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 02:18:55] 2025-11-24 01:18:32,467 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 02:18:55] 2025-11-24 01:18:49,663 | INFO     | [monitor] cgroup control has ended
[2025-11-24 02:18:55] 2025-11-24 01:18:50,661 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140698035795776)>', '<ExcThread(monitor, started 140697374004992)>']
[2025-11-24 02:18:55] 2025-11-24 01:18:51,563 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 02:18:55] 2025-11-24 01:18:51,564 | INFO     | [monitor] control thread has ended
[2025-11-24 02:18:55] 2025-11-24 01:18:55,687 | INFO     | all workflow threads have been joined
[2025-11-24 02:18:55] 2025-11-24 01:18:55,687 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 02:18:55] 2025-11-24 01:18:55,688 | INFO     | traces error code: 0
[2025-11-24 02:18:55] 2025-11-24 01:18:55,688 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 02:18:55] 2025-11-24 01:18:55,738 [wrapper] ==== pilot stdout END ====
[2025-11-24 02:18:55] 2025-11-24 01:18:55,741 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 02:18:55] 2025-11-24 01:18:55,744 [wrapper] pilotpid: 575184
[2025-11-24 02:18:55] 2025-11-24 01:18:55,747 [wrapper] Pilot exit status: 0
[2025-11-24 02:18:55] 2025-11-24 01:18:55,754 [wrapper] pandaids: 6895335654
[2025-11-24 02:18:55] 2025-11-24 01:18:55,771 [wrapper] cleanup supervisor_pilot  575190 575185
[2025-11-24 02:18:55] 2025-11-24 01:18:55,774 [wrapper] Test setup, not cleaning
[2025-11-24 02:18:55] 2025-11-24 01:18:55,776 [wrapper] apfmon messages muted
[2025-11-24 02:18:55] 2025-11-24 01:18:55,779 [wrapper] ==== wrapper stdout END ====
[2025-11-24 02:18:55] 2025-11-24 01:18:55,781 [wrapper] ==== wrapper stderr END ====
[2025-11-24 02:18:55]  *** Error codes and diagnostics ***
[2025-11-24 02:18:55]     "exeErrorCode": 65,
[2025-11-24 02:18:55]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-24 02:18:55]     "pilotErrorCode": 1305,
[2025-11-24 02:18:55]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-24 02:18:55]  *** Listing of results directory ***
[2025-11-24 02:18:55] total 403388
[2025-11-24 02:18:55] -rw-r--r-- 1 boinc boinc      5112 Nov 22 05:55 queuedata.json
[2025-11-24 02:18:55] -rw-r--r-- 1 boinc boinc    576529 Nov 22 05:55 pilot3.tar.gz
[2025-11-24 02:18:55] -rwx------ 1 boinc boinc     36292 Nov 22 05:56 runpilot2-wrapper.sh
[2025-11-24 02:18:55] -rw-r--r-- 1 boinc boinc       100 Nov 24 02:14 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 02:18:55] -rwxr-xr-x 1 boinc boinc      7986 Nov 24 02:14 run_atlas
[2025-11-24 02:18:55] -rw-r--r-- 1 boinc boinc       105 Nov 24 02:14 job.xml
[2025-11-24 02:18:55] -rw-r--r-- 2 boinc boinc 408882941 Nov 24 02:14 EVNT.47483658._001065.pool.root.1
[2025-11-24 02:18:55] -rw-r--r-- 2 boinc boinc    590102 Nov 24 02:14 input.tar.gz
[2025-11-24 02:18:55] -rw-r--r-- 2 boinc boinc     15847 Nov 24 02:14 start_atlas.sh
[2025-11-24 02:18:55] drwxrwx--x 2 boinc boinc      4096 Nov 24 02:14 shared
[2025-11-24 02:18:55] -rw-r--r-- 1 boinc boinc         0 Nov 24 02:14 boinc_setup_complete
[2025-11-24 02:18:55] -rw-r--r-- 1 boinc boinc      6195 Nov 24 02:14 init_data.xml
[2025-11-24 02:18:55] -rw-r--r-- 1 boinc boinc         0 Nov 24 02:14 boinc_lockfile
[2025-11-24 02:18:55] -rw-r--r-- 1 boinc boinc      2784 Nov 24 02:14 pandaJob.out
[2025-11-24 02:18:55] -rw------- 1 boinc boinc    989786 Nov 24 02:14 agis_schedconf.cvmfs.json
[2025-11-24 02:18:55] -rw------- 1 boinc boinc   1526164 Nov 24 02:14 agis_ddmendpoints.agis.ALL.json
[2025-11-24 02:18:55] drwx------ 5 boinc boinc      4096 Nov 24 02:14 pilot3
[2025-11-24 02:18:55] -rw-r--r-- 1 boinc boinc       522 Nov 24 02:15 boinc_task_state.xml
[2025-11-24 02:18:55] -rw------- 1 boinc boinc       957 Nov 24 02:15 memory_monitor_summary.json
[2025-11-24 02:18:55] -rw------- 1 boinc boinc     54331 Nov 24 02:15 log.47556149._000520.job.log.tgz.1
[2025-11-24 02:18:55] -rw------- 1 boinc boinc        95 Nov 24 02:17 pilot_heartbeat.json
[2025-11-24 02:18:55] -rw------- 1 boinc boinc      8409 Nov 24 02:18 heartbeat.json
[2025-11-24 02:18:55] -rw-r--r-- 1 boinc boinc      8192 Nov 24 02:18 boinc_mmap_file
[2025-11-24 02:18:55] -rw-r--r-- 1 boinc boinc        22 Nov 24 02:18 wrapper_checkpoint.txt
[2025-11-24 02:18:55] -rw------- 1 boinc boinc      4751 Nov 24 02:18 pilotlog.txt
[2025-11-24 02:18:55] -rw------- 1 boinc boinc     93149 Nov 24 02:18 log.47556149._000520.job.log.1
[2025-11-24 02:18:55] -rw------- 1 boinc boinc       186 Nov 24 02:18 output.list
[2025-11-24 02:18:55] -rw-r--r-- 1 boinc boinc       620 Nov 24 02:18 runtime_log
[2025-11-24 02:18:55] -rw------- 1 boinc boinc    163840 Nov 24 02:18 result.tar.gz
[2025-11-24 02:18:55] -rw-r--r-- 1 boinc boinc      8744 Nov 24 02:18 runtime_log.err
[2025-11-24 02:18:55] -rw------- 1 boinc boinc       649 Nov 24 02:18 lPJNDmrqug8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmQxHKDmhf359m.diag
[2025-11-24 02:18:55] -rw-r--r-- 1 boinc boinc      8464 Nov 24 02:18 stderr.txt
[2025-11-24 02:18:55] No HITS result produced
[2025-11-24 02:18:55]  *** Contents of shared directory: ***
[2025-11-24 02:18:55] total 400056
[2025-11-24 02:18:55] -rw-r--r-- 2 boinc boinc 408882941 Nov 24 02:14 ATLAS.root_0
[2025-11-24 02:18:55] -rw-r--r-- 2 boinc boinc    590102 Nov 24 02:14 input.tar.gz
[2025-11-24 02:18:55] -rw-r--r-- 2 boinc boinc     15847 Nov 24 02:14 start_atlas.sh
[2025-11-24 02:18:55] -rw------- 1 boinc boinc    163840 Nov 24 02:18 result.tar.gz
02:18:57 (571454): run_atlas exited; CPU time 31.283412
02:18:57 (571454): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN