Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
19:47:15 (1686): wrapper (7.7.26015): starting
19:47:15 (1686): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 19:47:15] Arguments: --nthreads 8
[2025-11-23 19:47:15] Threads: 8
[2025-11-23 19:47:15] Checking for CVMFS
[2025-11-23 19:47:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 19:47:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 19:47:15] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 19:47:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 19:47:15] 2.11.2.0 27562 330486 280104 153227 0 90 12220636 18432000 2547 130560 7 672436695 99.308 1127001473 26039 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-11-23 19:47:15] CVMFS is ok
[2025-11-23 19:47:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 19:47:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 19:47:15] Further information can be found at the LHC@home message board.
[2025-11-23 19:47:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 19:47:15] Checking for apptainer binary...
[2025-11-23 19:47:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 19:47:15] Running /usr/bin/apptainer --version
[2025-11-23 19:47:15] apptainer version 1.3.2-1.el7
[2025-11-23 19:47:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 19:47:16] c-9-30.aglt2.org
[2025-11-23 19:47:16] apptainer works
[2025-11-23 19:47:16] Set ATHENA_PROC_NUMBER=8
[2025-11-23 19:47:16] Set ATHENA_CORE_NUMBER=8
[2025-11-23 19:47:16] Starting ATLAS job with PandaID=6895364637
[2025-11-23 19:47:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 12:48:15]  *** The last 200 lines of the pilot log: ***
[2025-11-24 12:48:15] 2025-11-24 17:47:41,551 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 12:48:15] 2025-11-24 17:47:41,551 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 12:48:15] 2025-11-24 17:47:41,578 | INFO     | fitting pss+swap vs Time
[2025-11-24 12:48:15] 2025-11-24 17:47:41,579 | INFO     | sum of square deviations: 312882254437.70325
[2025-11-24 12:48:15] 2025-11-24 17:47:41,614 | INFO     | sum of deviations: 1668717246063.0276
[2025-11-24 12:48:15] 2025-11-24 17:47:41,614 | INFO     | mean x: 1763975832.658026
[2025-11-24 12:48:15] 2025-11-24 17:47:41,614 | INFO     | mean y: 2858858.3878364908
[2025-11-24 12:48:15] 2025-11-24 17:47:41,614 | INFO     | intersect: -9405079277.588875
[2025-11-24 12:48:15] 2025-11-24 17:47:41,616 | INFO     | chi2: 4.857682325282416
[2025-11-24 12:48:15] 2025-11-24 17:47:41,617 | INFO     | sum of square deviations: 308226545183.0268
[2025-11-24 12:48:15] 2025-11-24 17:47:41,646 | INFO     | sum of deviations: 1940979949606.03
[2025-11-24 12:48:15] 2025-11-24 17:47:41,646 | INFO     | mean x: 1763975680.1613226
[2025-11-24 12:48:15] 2025-11-24 17:47:41,646 | INFO     | mean y: 2867770.9128256515
[2025-11-24 12:48:15] 2025-11-24 17:47:41,647 | INFO     | intersect: -11105330015.078281
[2025-11-24 12:48:15] 2025-11-24 17:47:41,648 | INFO     | chi2: 2.569570133101932
[2025-11-24 12:48:15] 2025-11-24 17:47:41,648 | INFO     | current chi2=2.569570133101932 (change=47.102960608842565 %)
[2025-11-24 12:48:15] 2025-11-24 17:47:41,650 | INFO     | sum of square deviations: 303617255403.3293
[2025-11-24 12:48:15] 2025-11-24 17:47:41,678 | INFO     | sum of deviations: 2053317316070.7314
[2025-11-24 12:48:15] 2025-11-24 17:47:41,678 | INFO     | mean x: 1763975527.6646526
[2025-11-24 12:48:15] 2025-11-24 17:47:41,679 | INFO     | mean y: 2871484.6988922455
[2025-11-24 12:48:15] 2025-11-24 17:47:41,679 | INFO     | intersect: -11926626696.382156
[2025-11-24 12:48:15] 2025-11-24 17:47:41,680 | INFO     | chi2: 2.080816297923557
[2025-11-24 12:48:15] 2025-11-24 17:47:41,680 | INFO     | current chi2=2.080816297923557 (change=19.0208404465054 %)
[2025-11-24 12:48:15] 2025-11-24 17:47:41,680 | INFO     | right removable region: 992
[2025-11-24 12:48:15] 2025-11-24 17:47:41,682 | INFO     | sum of square deviations: 308226142583.0269
[2025-11-24 12:48:15] 2025-11-24 17:47:41,710 | INFO     | sum of deviations: 1434794766239.6052
[2025-11-24 12:48:15] 2025-11-24 17:47:41,711 | INFO     | mean x: 1763975985.1613226
[2025-11-24 12:48:15] 2025-11-24 17:47:41,711 | INFO     | mean y: 2866508.1763527053
[2025-11-24 12:48:15] 2025-11-24 17:47:41,711 | INFO     | intersect: -8208453563.741481
[2025-11-24 12:48:15] 2025-11-24 17:47:41,712 | INFO     | chi2: 3.0604900417216525
[2025-11-24 12:48:15] 2025-11-24 17:47:41,713 | INFO     | current chi2=3.0604900417216525 (change=36.99690846820203 %)
[2025-11-24 12:48:15] 2025-11-24 17:47:41,714 | INFO     | sum of square deviations: 303616450203.3295
[2025-11-24 12:48:15] 2025-11-24 17:47:41,722 | INFO     | monitor loop #4224: job 0:6895364637 is in state 'finished'
[2025-11-24 12:48:15] 2025-11-24 17:47:41,733 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 12:48:15] 2025-11-24 17:47:41,743 | INFO     | sum of deviations: 1366498998878.2788
[2025-11-24 12:48:15] 2025-11-24 17:47:41,743 | INFO     | mean x: 1763976137.6646526
[2025-11-24 12:48:15] 2025-11-24 17:47:41,743 | INFO     | mean y: 2868766.8056394765
[2025-11-24 12:48:15] 2025-11-24 17:47:41,744 | INFO     | intersect: -7936330919.343272
[2025-11-24 12:48:15] 2025-11-24 17:47:41,745 | INFO     | chi2: 3.000167716266358
[2025-11-24 12:48:15] 2025-11-24 17:47:41,745 | INFO     | current chi2=3.000167716266358 (change=1.97100218046652 %)
[2025-11-24 12:48:15] 2025-11-24 17:47:41,745 | INFO     | left removable region: 20
[2025-11-24 12:48:15] 2025-11-24 17:47:41,747 | INFO     | sum of square deviations: 284758458794.9169
[2025-11-24 12:48:15] 2025-11-24 17:47:41,778 | INFO     | sum of deviations: 1659929306624.905
[2025-11-24 12:48:15] 2025-11-24 17:47:41,778 | INFO     | mean x: 1763976107.175926
[2025-11-24 12:48:15] 2025-11-24 17:47:41,778 | INFO     | mean y: 2885225.9362139916
[2025-11-24 12:48:15] 2025-11-24 17:47:41,778 | INFO     | intersect: -10279779067.440351
[2025-11-24 12:48:15] 2025-11-24 17:47:41,780 | INFO     | chi2: 0.16591273008489932
[2025-11-24 12:48:15] 2025-11-24 17:47:41,780 | INFO     | current memory leak: 5.83 B/s (using 972 data points, chi2=0.17)
[2025-11-24 12:48:15] 2025-11-24 17:47:41,781 | INFO     | could have reported an average CPU frequency of 2999 MHz (37 samples)
[2025-11-24 12:48:15] 2025-11-24 17:47:41,781 | INFO     | ..............................
[2025-11-24 12:48:15] 2025-11-24 17:47:41,782 | INFO     | . Timing measurements:
[2025-11-24 12:48:15] 2025-11-24 17:47:41,782 | INFO     | . get job = 0 s
[2025-11-24 12:48:15] 2025-11-24 17:47:41,782 | INFO     | . initial setup = 2 s
[2025-11-24 12:48:15] 2025-11-24 17:47:41,782 | INFO     | . payload setup = 4 s
[2025-11-24 12:48:15] 2025-11-24 17:47:41,782 | INFO     | . stage-in = 0 s
[2025-11-24 12:48:15] 2025-11-24 17:47:41,782 | INFO     | . payload execution = 61184 s
[2025-11-24 12:48:15] 2025-11-24 17:47:41,782 | INFO     | . stage-out = 3 s
[2025-11-24 12:48:15] 2025-11-24 17:47:41,783 | INFO     | . log creation = 0 s
[2025-11-24 12:48:15] 2025-11-24 17:47:41,783 | INFO     | ..............................
[2025-11-24 12:48:15] 2025-11-24 17:47:41,885 | INFO     | 
[2025-11-24 12:48:15] 2025-11-24 17:47:41,885 | INFO     | job summary report
[2025-11-24 12:48:15] 2025-11-24 17:47:41,885 | INFO     | --------------------------------------------------
[2025-11-24 12:48:15] 2025-11-24 17:47:41,885 | INFO     | PanDA job id: 6895364637
[2025-11-24 12:48:15] 2025-11-24 17:47:41,885 | INFO     | task id: 47556137
[2025-11-24 12:48:15] 2025-11-24 17:47:41,886 | INFO     | errors: (none)
[2025-11-24 12:48:15] 2025-11-24 17:47:41,886 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 12:48:15] 2025-11-24 17:47:41,886 | INFO     | pilot state: finished 
[2025-11-24 12:48:15] 2025-11-24 17:47:41,886 | INFO     | transexitcode: 0
[2025-11-24 12:48:15] 2025-11-24 17:47:41,886 | INFO     | exeerrorcode: 0
[2025-11-24 12:48:15] 2025-11-24 17:47:41,886 | INFO     | exeerrordiag: 
[2025-11-24 12:48:15] 2025-11-24 17:47:41,886 | INFO     | exitcode: 0
[2025-11-24 12:48:15] 2025-11-24 17:47:41,886 | INFO     | exitmsg: OK
[2025-11-24 12:48:15] 2025-11-24 17:47:41,886 | INFO     | cpuconsumptiontime: 470541 s
[2025-11-24 12:48:15] 2025-11-24 17:47:41,887 | INFO     | nevents: 1000
[2025-11-24 12:48:15] 2025-11-24 17:47:41,887 | INFO     | neventsw: 0
[2025-11-24 12:48:15] 2025-11-24 17:47:41,887 | INFO     | pid: 12782
[2025-11-24 12:48:15] 2025-11-24 17:47:41,887 | INFO     | pgrp: 12782
[2025-11-24 12:48:15] 2025-11-24 17:47:41,887 | INFO     | corecount: 8
[2025-11-24 12:48:15] 2025-11-24 17:47:41,887 | INFO     | event service: False
[2025-11-24 12:48:15] 2025-11-24 17:47:41,887 | INFO     | sizes: {0: 2298807, 4: 2299069, 11: 2299097, 61190: 2351923, 61191: 2351922, 61195: 2361947, 61200: 2362137}
[2025-11-24 12:48:15] 2025-11-24 17:47:41,887 | INFO     | --------------------------------------------------
[2025-11-24 12:48:15] 2025-11-24 17:47:41,887 | INFO     | 
[2025-11-24 12:48:15] 2025-11-24 17:47:41,888 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-24 12:48:15] 2025-11-24 17:47:41,912 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 12:48:15] 2025-11-24 17:47:41,913 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 12:48:15] 2025-11-24 17:47:41,913 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 12:48:15] 2025-11-24 17:47:41,913 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 12:48:15] 2025-11-24 17:47:41,913 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 12:48:15] 2025-11-24 17:47:41,913 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 12:48:15] 2025-11-24 17:47:41,914 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 12:48:15] 2025-11-24 17:47:41,914 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 12:48:15] 2025-11-24 17:47:41,914 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 12:48:15] 2025-11-24 17:47:41,914 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 12:48:15] 2025-11-24 17:47:41,915 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 12:48:15] 2025-11-24 17:47:41,915 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 12:48:15] 2025-11-24 17:47:41,915 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 12:48:15] 2025-11-24 17:47:41,915 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 12:48:15] 2025-11-24 17:47:41,915 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 12:48:15] 2025-11-24 17:47:41,916 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 12:48:15] 2025-11-24 17:47:41,916 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 12:48:15] 2025-11-24 17:47:41,916 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 12:48:15] 2025-11-24 17:47:41,916 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 12:48:15] 2025-11-24 17:47:41,916 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 12:48:15] 2025-11-24 17:47:41,917 | INFO     | job 6895364637 has completed (purged errors)
[2025-11-24 12:48:15] 2025-11-24 17:47:41,917 | INFO     | overall cleanup function is called
[2025-11-24 12:48:15] 2025-11-24 17:47:42,223 | INFO     | PID=5658 has CPU usage=19.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-24 12:48:15] 2025-11-24 17:47:42,223 | INFO     | .. there are 4 such processes running
[2025-11-24 12:48:15] 2025-11-24 17:47:42,938 | INFO     | --- collectZombieJob: --- 10, [12782]
[2025-11-24 12:48:15] 2025-11-24 17:47:42,939 | INFO     | zombie collector waiting for pid 12782
[2025-11-24 12:48:15] 2025-11-24 17:47:42,939 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 12:48:15] 2025-11-24 17:47:42,939 | INFO     | collected zombie processes
[2025-11-24 12:48:15] 2025-11-24 17:47:42,939 | INFO     | will attempt to kill all subprocesses of pid=12782
[2025-11-24 12:48:15] 2025-11-24 17:47:43,222 | INFO     | process IDs to be killed: [12782] (in reverse order)
[2025-11-24 12:48:15] 2025-11-24 17:47:43,334 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 12:48:15] 2025-11-24 17:47:43,335 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 12:48:15] 2025-11-24 17:47:43,346 | INFO     | did not find any defunct processes belonging to 12782
[2025-11-24 12:48:15] 2025-11-24 17:47:43,356 | INFO     | did not find any defunct processes belonging to 12782
[2025-11-24 12:48:15] 2025-11-24 17:47:43,358 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 12:48:15] 2025-11-24 17:47:43,358 | INFO     | ready for new job
[2025-11-24 12:48:15] 2025-11-24 17:47:43,358 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 12:48:15] 2025-11-24 17:47:43,363 | INFO     | ***************************************
[2025-11-24 12:48:15] 2025-11-24 17:47:43,363 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 12:48:15] 2025-11-24 17:47:43,363 | INFO     | ***************************************
[2025-11-24 12:48:15] 2025-11-24 17:47:43,363 | INFO     | 
[2025-11-24 12:48:15] 2025-11-24 17:47:43,365 | INFO     | architecture information:
[2025-11-24 12:48:15] 2025-11-24 17:47:43,366 | INFO     | executing command: cat /etc/os-release
[2025-11-24 12:48:15] 2025-11-24 17:47:43,379 | INFO     | cat /etc/os-release:
[2025-11-24 12:48:15] NAME="CentOS Linux"
[2025-11-24 12:48:15] VERSION="7 (Core)"
[2025-11-24 12:48:15] ID="centos"
[2025-11-24 12:48:15] ID_LIKE="rhel fedora"
[2025-11-24 12:48:15] VERSION_ID="7"
[2025-11-24 12:48:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 12:48:15] ANSI_COLOR="0;31"
[2025-11-24 12:48:15] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 12:48:15] HOME_URL="https://www.centos.org/"
[2025-11-24 12:48:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 12:48:15] 
[2025-11-24 12:48:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 12:48:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 12:48:15] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 12:48:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 12:48:15] 
[2025-11-24 12:48:15] 2025-11-24 17:47:43,380 | INFO     | ***************************************
[2025-11-24 12:48:15] 2025-11-24 17:47:43,881 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-24 12:48:15] 2025-11-24 17:47:43,896 | INFO     | sufficient remaining disk space (101124669440 B)
[2025-11-24 12:48:15] 2025-11-24 17:47:43,896 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 12:48:15] 2025-11-24 17:47:43,896 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 12:48:15] 2025-11-24 17:47:43,897 | INFO     | update_server=False
[2025-11-24 12:48:15] 2025-11-24 17:47:43,897 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 12:48:15] 2025-11-24 17:47:44,247 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-24 12:48:15] 2025-11-24 17:47:44,248 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-24 12:48:15] 2025-11-24 17:47:44,248 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 12:48:15] 2025-11-24 17:47:44,248 | INFO     | will abort loop
[2025-11-24 12:48:15] 2025-11-24 17:47:44,273 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 12:48:15] 2025-11-24 17:47:44,417 | INFO     | all job control threads have been joined
[2025-11-24 12:48:15] 2025-11-24 17:47:44,759 | INFO     | all data control threads have been joined
[2025-11-24 12:48:15] 2025-11-24 17:47:44,902 | INFO     | [job] retrieve thread has finished
[2025-11-24 12:48:15] 2025-11-24 17:47:44,945 | INFO     | all payload control threads have been joined
[2025-11-24 12:48:15] 2025-11-24 17:47:44,994 | INFO     | [data] copytool_in thread has finished
[2025-11-24 12:48:15] 2025-11-24 17:47:44,995 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 12:48:15] 2025-11-24 17:47:45,255 | INFO     | [job] job monitor thread has finished
[2025-11-24 12:48:15] 2025-11-24 17:47:45,422 | INFO     | [job] control thread has finished
[2025-11-24 12:48:15] 2025-11-24 17:47:45,624 | INFO     | [payload] failed_post thread has finished
[2025-11-24 12:48:15] 2025-11-24 17:47:45,736 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 12:48:15] 2025-11-24 17:47:45,764 | INFO     | [data] control thread has finished
[2025-11-24 12:48:15] 2025-11-24 17:47:45,856 | INFO     | [job] validate thread has finished
[2025-11-24 12:48:15] 2025-11-24 17:47:45,948 | INFO     | [payload] control thread has finished
[2025-11-24 12:48:15] 2025-11-24 17:47:46,207 | INFO     | [payload] validate_post thread has finished
[2025-11-24 12:48:15] 2025-11-24 17:47:46,278 | INFO     | [data] copytool_out thread has finished
[2025-11-24 12:48:15] 2025-11-24 17:47:46,375 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 12:48:15] 2025-11-24 17:47:46,897 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 12:48:15] 2025-11-24 17:47:46,911 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 12:48:15] 2025-11-24 17:47:47,902 | INFO     | [job] queue monitor thread has finished
[2025-11-24 12:48:15] 2025-11-24 17:47:50,917 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 12:48:15] 2025-11-24 17:47:54,052 | INFO     | job.realtimelogging is not enabled
[2025-11-24 12:48:15] 2025-11-24 17:47:55,058 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 12:48:15] 2025-11-24 17:48:09,309 | INFO     | [monitor] cgroup control has ended
[2025-11-24 12:48:15] 2025-11-24 17:48:10,314 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140642521179968)>', '<ExcThread(monitor, started 140641782720256)>']
[2025-11-24 12:48:15] 2025-11-24 17:48:14,640 | INFO     | PID=5658 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-24 12:48:15] 2025-11-24 17:48:14,640 | INFO     | .. there are 4 such processes running
[2025-11-24 12:48:15] 2025-11-24 17:48:14,640 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 12:48:15] 2025-11-24 17:48:14,641 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 12:48:15] 2025-11-24 17:48:14,641 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 12:48:15] 2025-11-24 17:48:14,641 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 12:48:15] 2025-11-24 17:48:14,641 | INFO     | [monitor] control thread has ended
[2025-11-24 12:48:15] 2025-11-24 17:48:15,339 | INFO     | all workflow threads have been joined
[2025-11-24 12:48:15] 2025-11-24 17:48:15,340 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 12:48:15] 2025-11-24 17:48:15,340 | INFO     | traces error code: 0
[2025-11-24 12:48:15] 2025-11-24 17:48:15,340 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 12:48:15] 2025-11-24 17:48:15,454 [wrapper] ==== pilot stdout END ====
[2025-11-24 12:48:15] 2025-11-24 17:48:15,456 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 12:48:15] 2025-11-24 17:48:15,458 [wrapper] pilotpid: 5658
[2025-11-24 12:48:15] 2025-11-24 17:48:15,461 [wrapper] Pilot exit status: 0
[2025-11-24 12:48:15] 2025-11-24 17:48:15,468 [wrapper] pandaids: 6895364637
[2025-11-24 12:48:15] 2025-11-24 17:48:15,513 [wrapper] cleanup supervisor_pilot 23330 5659
[2025-11-24 12:48:15] 2025-11-24 17:48:15,516 [wrapper] Test setup, not cleaning
[2025-11-24 12:48:15] 2025-11-24 17:48:15,518 [wrapper] apfmon messages muted
[2025-11-24 12:48:15] 2025-11-24 17:48:15,523 [wrapper] ==== wrapper stdout END ====
[2025-11-24 12:48:15] 2025-11-24 17:48:15,526 [wrapper] ==== wrapper stderr END ====
[2025-11-24 12:48:15]  *** Error codes and diagnostics ***
[2025-11-24 12:48:15]     "exeErrorCode": 0,
[2025-11-24 12:48:15]     "exeErrorDiag": "",
[2025-11-24 12:48:15]     "pilotErrorCode": 0,
[2025-11-24 12:48:15]     "pilotErrorDiag": "",
[2025-11-24 12:48:15]  *** Listing of results directory ***
[2025-11-24 12:48:15] total 1312004
[2025-11-24 12:48:15] -rw-r--r-- 1 boincer umatlas      5112 Nov 23 11:03 queuedata.json
[2025-11-24 12:48:15] -rw-r--r-- 1 boincer umatlas    576529 Nov 23 11:03 pilot3.tar.gz
[2025-11-24 12:48:15] -rwx------ 1 boincer umatlas     36292 Nov 23 11:03 runpilot2-wrapper.sh
[2025-11-24 12:48:15] -rw-r--r-- 1 boincer umatlas       100 Nov 23 19:47 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 12:48:15] -rwxr-xr-x 1 boincer umatlas      7986 Nov 23 19:47 run_atlas
[2025-11-24 12:48:15] -rw-r--r-- 1 boincer umatlas       105 Nov 23 19:47 job.xml
[2025-11-24 12:48:15] -rw-r--r-- 2 boincer umatlas 409238228 Nov 23 19:47 EVNT.47483658._000811.pool.root.1
[2025-11-24 12:48:15] -rw-r--r-- 2 boincer umatlas     15847 Nov 23 19:47 start_atlas.sh
[2025-11-24 12:48:15] drwxrwx--x 2 boincer umatlas      4096 Nov 23 19:47 shared
[2025-11-24 12:48:15] -rw-r--r-- 2 boincer umatlas    590102 Nov 23 19:47 input.tar.gz
[2025-11-24 12:48:15] -rw-r--r-- 1 boincer umatlas         0 Nov 23 19:47 boinc_lockfile
[2025-11-24 12:48:15] -rw-r--r-- 1 boincer umatlas      2786 Nov 23 19:47 pandaJob.out
[2025-11-24 12:48:15] -rw------- 1 boincer umatlas        57 Nov 23 19:47 setup.sh.local
[2025-11-24 12:48:15] -rw------- 1 boincer umatlas    989786 Nov 23 19:47 agis_schedconf.cvmfs.json
[2025-11-24 12:48:15] drwx------ 5 boincer umatlas      4096 Nov 23 19:47 pilot3
[2025-11-24 12:48:15] -rw-r--r-- 1 boincer umatlas       533 Nov 24 12:35 boinc_task_state.xml
[2025-11-24 12:48:15] -rw-r--r-- 1 boincer umatlas      6037 Nov 24 12:39 init_data.xml
[2025-11-24 12:48:15] -rw------- 1 boincer umatlas 909242383 Nov 24 12:47 HITS.47556137._007973.pool.root.1
[2025-11-24 12:48:15] -rw------- 1 boincer umatlas      1061 Nov 24 12:47 memory_monitor_summary.json
[2025-11-24 12:48:15] -rw------- 1 boincer umatlas   1516227 Nov 24 12:47 agis_ddmendpoints.agis.ALL.json
[2025-11-24 12:48:15] -rw------- 1 boincer umatlas   2204058 Nov 24 12:47 log.47556137._007973.job.log.tgz.1
[2025-11-24 12:48:15] -rw------- 1 boincer umatlas        95 Nov 24 12:47 pilot_heartbeat.json
[2025-11-24 12:48:15] -rw------- 1 boincer umatlas      8642 Nov 24 12:47 heartbeat.json
[2025-11-24 12:48:15] -rw-r--r-- 1 boincer umatlas      8192 Nov 24 12:47 boinc_mmap_file
[2025-11-24 12:48:15] -rw-r--r-- 1 boincer umatlas        29 Nov 24 12:47 wrapper_checkpoint.txt
[2025-11-24 12:48:15] -rw------- 1 boincer umatlas      5079 Nov 24 12:48 pilotlog.txt
[2025-11-24 12:48:15] -rw------- 1 boincer umatlas   8339947 Nov 24 12:48 log.47556137._007973.job.log.1
[2025-11-24 12:48:15] -rw------- 1 boincer umatlas       353 Nov 24 12:48 output.list
[2025-11-24 12:48:15] -rw-r--r-- 1 boincer umatlas       620 Nov 24 12:48 runtime_log
[2025-11-24 12:48:15] -rw------- 1 boincer umatlas  10567680 Nov 24 12:48 result.tar.gz
[2025-11-24 12:48:15] -rw-r--r-- 1 boincer umatlas      9333 Nov 24 12:48 runtime_log.err
[2025-11-24 12:48:15] -rw------- 1 boincer umatlas       665 Nov 24 12:48 NkBNDmKkRh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmA2KKDmDzrGVn.diag
[2025-11-24 12:48:15] -rw-r--r-- 1 boincer umatlas     21323 Nov 24 12:48 stderr.txt
[2025-11-24 12:48:15] HITS file was successfully produced:
[2025-11-24 12:48:15] -rw------- 1 boincer umatlas 909242383 Nov 24 12:47 shared/HITS.pool.root.1
[2025-11-24 12:48:15]  *** Contents of shared directory: ***
[2025-11-24 12:48:15] total 1298504
[2025-11-24 12:48:15] -rw-r--r-- 2 boincer umatlas 409238228 Nov 23 19:47 ATLAS.root_0
[2025-11-24 12:48:15] -rw-r--r-- 2 boincer umatlas     15847 Nov 23 19:47 start_atlas.sh
[2025-11-24 12:48:15] -rw-r--r-- 2 boincer umatlas    590102 Nov 23 19:47 input.tar.gz
[2025-11-24 12:48:15] -rw------- 1 boincer umatlas 909242383 Nov 24 12:47 HITS.pool.root.1
[2025-11-24 12:48:15] -rw------- 1 boincer umatlas  10567680 Nov 24 12:48 result.tar.gz
12:48:16 (1686): run_atlas exited; CPU time 470982.923077
12:48:16 (1686): called boinc_finish(0)

</stderr_txt>
]]>

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