Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
19:43:56 (24922): wrapper (7.7.26015): starting
19:43:56 (24922): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 19:43:56] Arguments: --nthreads 8
[2025-11-23 19:43:56] Threads: 8
[2025-11-23 19:43:56] Checking for CVMFS
[2025-11-23 19:43:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 19:43:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 19:43:56] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 19:43:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 19:43:57] 2.11.2.0 27562 330483 282172 153227 3 81 12197110 18432000 2529 130560 7 672367125 99.308 1127001472 26039 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-11-23 19:43:57] CVMFS is ok
[2025-11-23 19:43:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 19:43:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 19:43:57] Further information can be found at the LHC@home message board.
[2025-11-23 19:43:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 19:43:57] Checking for apptainer binary...
[2025-11-23 19:43:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 19:43:57] Running /usr/bin/apptainer --version
[2025-11-23 19:43:57] apptainer version 1.3.2-1.el7
[2025-11-23 19:43:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 19:43:58] c-9-30.aglt2.org
[2025-11-23 19:43:58] apptainer works
[2025-11-23 19:43:58] Set ATHENA_PROC_NUMBER=8
[2025-11-23 19:43:58] Set ATHENA_CORE_NUMBER=8
[2025-11-23 19:43:58] Starting ATLAS job with PandaID=6895364639
[2025-11-23 19:43:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 13:12:11]  *** The last 200 lines of the pilot log: ***
[2025-11-24 13:12:11] 2025-11-24 18:11:37,574 | INFO     | monitor loop #4342: job 0:6895364639 is in state 'finished'
[2025-11-24 13:12:11] 2025-11-24 18:11:37,575 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 13:12:11] 2025-11-24 18:11:37,835 | INFO     | time since job start (62849s) is within the limit (172800.0s)
[2025-11-24 13:12:11] 2025-11-24 18:11:38,951 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-24 13:12:11] 2025-11-24 18:11:38,955 | INFO     | found 16 cores (8 cores per socket, 2 sockets) HT, CPU MHz: 2999.9168750000013
[2025-11-24 13:12:11] 2025-11-24 18:11:38,958 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6895364639/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 13:12:11] 2025-11-24 18:11:38,959 | INFO     | extracted standard info from prmon json
[2025-11-24 13:12:11] 2025-11-24 18:11:38,959 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 13:12:11] 2025-11-24 18:11:38,959 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 13:12:11] 2025-11-24 18:11:38,971 | INFO     | fitting pss+swap vs Time
[2025-11-24 13:12:11] 2025-11-24 18:11:38,972 | INFO     | sum of square deviations: 338834931161.94324
[2025-11-24 13:12:11] 2025-11-24 18:11:38,988 | INFO     | sum of deviations: 1758252836831.602
[2025-11-24 13:12:11] 2025-11-24 18:11:38,988 | INFO     | mean x: 1763976457.1650486
[2025-11-24 13:12:11] 2025-11-24 18:11:38,988 | INFO     | mean y: 2873509.1611650484
[2025-11-24 13:12:11] 2025-11-24 18:11:38,988 | INFO     | intersect: -9150600128.514824
[2025-11-24 13:12:11] 2025-11-24 18:11:38,989 | INFO     | chi2: 4.6127814490732195
[2025-11-24 13:12:11] 2025-11-24 18:11:38,991 | INFO     | sum of square deviations: 333924545687.2192
[2025-11-24 13:12:11] 2025-11-24 18:11:39,021 | INFO     | sum of deviations: 2035165590914.3262
[2025-11-24 13:12:11] 2025-11-24 18:11:39,021 | INFO     | mean x: 1763976304.6682928
[2025-11-24 13:12:11] 2025-11-24 18:11:39,021 | INFO     | mean y: 2882102.803902439
[2025-11-24 13:12:11] 2025-11-24 18:11:39,021 | INFO     | intersect: -10748001367.175528
[2025-11-24 13:12:11] 2025-11-24 18:11:39,022 | INFO     | chi2: 2.3613908428077988
[2025-11-24 13:12:11] 2025-11-24 18:11:39,022 | INFO     | current chi2=2.3613908428077988 (change=48.80765826696083 %)
[2025-11-24 13:12:11] 2025-11-24 18:11:39,023 | INFO     | sum of square deviations: 329061835524.9758
[2025-11-24 13:12:11] 2025-11-24 18:11:39,039 | INFO     | sum of deviations: 2150934008361.1477
[2025-11-24 13:12:11] 2025-11-24 18:11:39,039 | INFO     | mean x: 1763976152.1715686
[2025-11-24 13:12:11] 2025-11-24 18:11:39,039 | INFO     | mean y: 2885730.5705882353
[2025-11-24 13:12:11] 2025-11-24 18:11:39,039 | INFO     | intersect: -11527458678.986095
[2025-11-24 13:12:11] 2025-11-24 18:11:39,040 | INFO     | chi2: 1.8739505425603562
[2025-11-24 13:12:11] 2025-11-24 18:11:39,040 | INFO     | current chi2=1.8739505425603562 (change=20.64208480066156 %)
[2025-11-24 13:12:11] 2025-11-24 18:11:39,040 | INFO     | right removable region: 1019
[2025-11-24 13:12:11] 2025-11-24 18:11:39,041 | INFO     | sum of square deviations: 333924127837.2193
[2025-11-24 13:12:11] 2025-11-24 18:11:39,057 | INFO     | sum of deviations: 1532901024959.6104
[2025-11-24 13:12:11] 2025-11-24 18:11:39,057 | INFO     | mean x: 1763976609.6682928
[2025-11-24 13:12:11] 2025-11-24 18:11:39,057 | INFO     | mean y: 2880495.8341463413
[2025-11-24 13:12:11] 2025-11-24 18:11:39,057 | INFO     | intersect: -8094772017.264416
[2025-11-24 13:12:11] 2025-11-24 18:11:39,058 | INFO     | chi2: 2.9762201196750184
[2025-11-24 13:12:11] 2025-11-24 18:11:39,058 | INFO     | current chi2=2.9762201196750184 (change=35.47883955627276 %)
[2025-11-24 13:12:11] 2025-11-24 18:11:39,059 | INFO     | sum of square deviations: 329060999824.9756
[2025-11-24 13:12:11] 2025-11-24 18:11:39,075 | INFO     | sum of deviations: 1462539338504.6262
[2025-11-24 13:12:11] 2025-11-24 18:11:39,075 | INFO     | mean x: 1763976762.1715686
[2025-11-24 13:12:11] 2025-11-24 18:11:39,075 | INFO     | mean y: 2882701.6078431373
[2025-11-24 13:12:11] 2025-11-24 18:11:39,075 | INFO     | intersect: -7837260640.374812
[2025-11-24 13:12:11] 2025-11-24 18:11:39,077 | INFO     | chi2: 2.9168256525885807
[2025-11-24 13:12:11] 2025-11-24 18:11:39,077 | INFO     | current chi2=2.9168256525885807 (change=1.9956342171668116 %)
[2025-11-24 13:12:11] 2025-11-24 18:11:39,077 | INFO     | left removable region: 20
[2025-11-24 13:12:11] 2025-11-24 18:11:39,078 | INFO     | sum of square deviations: 309152269874.044
[2025-11-24 13:12:11] 2025-11-24 18:11:39,111 | INFO     | sum of deviations: 1753436619637.803
[2025-11-24 13:12:11] 2025-11-24 18:11:39,111 | INFO     | mean x: 1763976731.6836836
[2025-11-24 13:12:11] 2025-11-24 18:11:39,111 | INFO     | mean y: 2898160.129129129
[2025-11-24 13:12:11] 2025-11-24 18:11:39,111 | INFO     | intersect: -10001949608.846813
[2025-11-24 13:12:11] 2025-11-24 18:11:39,113 | INFO     | chi2: 0.14717847781371196
[2025-11-24 13:12:11] 2025-11-24 18:11:39,113 | INFO     | current memory leak: 5.67 B/s (using 999 data points, chi2=0.15)
[2025-11-24 13:12:11] 2025-11-24 18:11:39,114 | INFO     | could have reported an average CPU frequency of 2999 MHz (38 samples)
[2025-11-24 13:12:11] 2025-11-24 18:11:39,115 | INFO     | ..............................
[2025-11-24 13:12:11] 2025-11-24 18:11:39,115 | INFO     | . Timing measurements:
[2025-11-24 13:12:11] 2025-11-24 18:11:39,115 | INFO     | . get job = 0 s
[2025-11-24 13:12:11] 2025-11-24 18:11:39,115 | INFO     | . initial setup = 2 s
[2025-11-24 13:12:11] 2025-11-24 18:11:39,115 | INFO     | . payload setup = 4 s
[2025-11-24 13:12:11] 2025-11-24 18:11:39,115 | INFO     | . stage-in = 0 s
[2025-11-24 13:12:11] 2025-11-24 18:11:39,115 | INFO     | . payload execution = 62818 s
[2025-11-24 13:12:11] 2025-11-24 18:11:39,116 | INFO     | . stage-out = 3 s
[2025-11-24 13:12:11] 2025-11-24 18:11:39,116 | INFO     | . log creation = 0 s
[2025-11-24 13:12:11] 2025-11-24 18:11:39,116 | INFO     | ..............................
[2025-11-24 13:12:11] 2025-11-24 18:11:39,190 | INFO     | 
[2025-11-24 13:12:11] 2025-11-24 18:11:39,190 | INFO     | job summary report
[2025-11-24 13:12:11] 2025-11-24 18:11:39,190 | INFO     | --------------------------------------------------
[2025-11-24 13:12:11] 2025-11-24 18:11:39,190 | INFO     | PanDA job id: 6895364639
[2025-11-24 13:12:11] 2025-11-24 18:11:39,190 | INFO     | task id: 47556137
[2025-11-24 13:12:11] 2025-11-24 18:11:39,191 | INFO     | errors: (none)
[2025-11-24 13:12:11] 2025-11-24 18:11:39,191 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 13:12:11] 2025-11-24 18:11:39,191 | INFO     | pilot state: finished 
[2025-11-24 13:12:11] 2025-11-24 18:11:39,191 | INFO     | transexitcode: 0
[2025-11-24 13:12:11] 2025-11-24 18:11:39,191 | INFO     | exeerrorcode: 0
[2025-11-24 13:12:11] 2025-11-24 18:11:39,191 | INFO     | exeerrordiag: 
[2025-11-24 13:12:11] 2025-11-24 18:11:39,192 | INFO     | exitcode: 0
[2025-11-24 13:12:11] 2025-11-24 18:11:39,192 | INFO     | exitmsg: OK
[2025-11-24 13:12:11] 2025-11-24 18:11:39,192 | INFO     | cpuconsumptiontime: 482900 s
[2025-11-24 13:12:11] 2025-11-24 18:11:39,192 | INFO     | nevents: 1000
[2025-11-24 13:12:11] 2025-11-24 18:11:39,192 | INFO     | neventsw: 0
[2025-11-24 13:12:11] 2025-11-24 18:11:39,192 | INFO     | pid: 36840
[2025-11-24 13:12:11] 2025-11-24 18:11:39,192 | INFO     | pgrp: 36840
[2025-11-24 13:12:11] 2025-11-24 18:11:39,193 | INFO     | corecount: 8
[2025-11-24 13:12:11] 2025-11-24 18:11:39,193 | INFO     | event service: False
[2025-11-24 13:12:11] 2025-11-24 18:11:39,193 | INFO     | sizes: {0: 2298636, 1: 2298835, 4: 2299097, 11: 2299125, 62826: 2352451, 62827: 2352450, 62831: 2362419, 62832: 2362475, 62836: 2362721}
[2025-11-24 13:12:11] 2025-11-24 18:11:39,193 | INFO     | --------------------------------------------------
[2025-11-24 13:12:11] 2025-11-24 18:11:39,193 | INFO     | 
[2025-11-24 13:12:11] 2025-11-24 18:11:39,193 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-24 13:12:11] 2025-11-24 18:11:39,211 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 13:12:11] 2025-11-24 18:11:39,211 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 13:12:11] 2025-11-24 18:11:39,211 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 13:12:11] 2025-11-24 18:11:39,211 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 13:12:11] 2025-11-24 18:11:39,211 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 13:12:11] 2025-11-24 18:11:39,211 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 13:12:11] 2025-11-24 18:11:39,212 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 13:12:11] 2025-11-24 18:11:39,212 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 13:12:11] 2025-11-24 18:11:39,212 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 13:12:11] 2025-11-24 18:11:39,212 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 13:12:11] 2025-11-24 18:11:39,212 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 13:12:11] 2025-11-24 18:11:39,212 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 13:12:11] 2025-11-24 18:11:39,212 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 13:12:11] 2025-11-24 18:11:39,212 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 13:12:11] 2025-11-24 18:11:39,212 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 13:12:11] 2025-11-24 18:11:39,212 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 13:12:11] 2025-11-24 18:11:39,212 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 13:12:11] 2025-11-24 18:11:39,213 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 13:12:11] 2025-11-24 18:11:39,213 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 13:12:11] 2025-11-24 18:11:39,213 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 13:12:11] 2025-11-24 18:11:39,213 | INFO     | job 6895364639 has completed (purged errors)
[2025-11-24 13:12:11] 2025-11-24 18:11:39,213 | INFO     | overall cleanup function is called
[2025-11-24 13:12:11] 2025-11-24 18:11:40,226 | INFO     | --- collectZombieJob: --- 10, [36840]
[2025-11-24 13:12:11] 2025-11-24 18:11:40,227 | INFO     | zombie collector waiting for pid 36840
[2025-11-24 13:12:11] 2025-11-24 18:11:40,227 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 13:12:11] 2025-11-24 18:11:40,227 | INFO     | collected zombie processes
[2025-11-24 13:12:11] 2025-11-24 18:11:40,227 | INFO     | will attempt to kill all subprocesses of pid=36840
[2025-11-24 13:12:11] 2025-11-24 18:11:40,532 | INFO     | process IDs to be killed: [36840] (in reverse order)
[2025-11-24 13:12:11] 2025-11-24 18:11:40,631 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 13:12:11] 2025-11-24 18:11:40,631 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 13:12:11] 2025-11-24 18:11:40,642 | INFO     | did not find any defunct processes belonging to 36840
[2025-11-24 13:12:11] 2025-11-24 18:11:40,652 | INFO     | did not find any defunct processes belonging to 36840
[2025-11-24 13:12:11] 2025-11-24 18:11:40,654 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 13:12:11] 2025-11-24 18:11:40,654 | INFO     | ready for new job
[2025-11-24 13:12:11] 2025-11-24 18:11:40,654 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 13:12:11] 2025-11-24 18:11:40,659 | INFO     | ***************************************
[2025-11-24 13:12:11] 2025-11-24 18:11:40,660 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 13:12:11] 2025-11-24 18:11:40,660 | INFO     | ***************************************
[2025-11-24 13:12:11] 2025-11-24 18:11:40,660 | INFO     | 
[2025-11-24 13:12:11] 2025-11-24 18:11:40,662 | INFO     | architecture information:
[2025-11-24 13:12:11] 2025-11-24 18:11:40,665 | INFO     | executing command: cat /etc/os-release
[2025-11-24 13:12:11] 2025-11-24 18:11:40,686 | INFO     | cat /etc/os-release:
[2025-11-24 13:12:11] NAME="CentOS Linux"
[2025-11-24 13:12:11] VERSION="7 (Core)"
[2025-11-24 13:12:11] ID="centos"
[2025-11-24 13:12:11] ID_LIKE="rhel fedora"
[2025-11-24 13:12:11] VERSION_ID="7"
[2025-11-24 13:12:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 13:12:11] ANSI_COLOR="0;31"
[2025-11-24 13:12:11] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 13:12:11] HOME_URL="https://www.centos.org/"
[2025-11-24 13:12:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 13:12:11] 
[2025-11-24 13:12:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 13:12:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 13:12:11] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 13:12:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 13:12:11] 
[2025-11-24 13:12:11] 2025-11-24 18:11:40,687 | INFO     | ***************************************
[2025-11-24 13:12:11] 2025-11-24 18:11:41,189 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-24 13:12:11] 2025-11-24 18:11:41,207 | INFO     | sufficient remaining disk space (101963530240 B)
[2025-11-24 13:12:11] 2025-11-24 18:11:41,207 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 13:12:11] 2025-11-24 18:11:41,208 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 13:12:11] 2025-11-24 18:11:41,208 | INFO     | update_server=False
[2025-11-24 13:12:11] 2025-11-24 18:11:41,208 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 13:12:11] 2025-11-24 18:11:41,208 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 13:12:11] 2025-11-24 18:11:41,208 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 13:12:11] 2025-11-24 18:11:41,209 | INFO     | aborting loop
[2025-11-24 13:12:11] 2025-11-24 18:11:41,548 | INFO     | all data control threads have been joined
[2025-11-24 13:12:11] 2025-11-24 18:11:41,589 | INFO     | all payload control threads have been joined
[2025-11-24 13:12:11] 2025-11-24 18:11:42,027 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 13:12:11] 2025-11-24 18:11:42,214 | INFO     | [job] retrieve thread has finished
[2025-11-24 13:12:11] 2025-11-24 18:11:42,215 | INFO     | [job] job monitor thread has finished
[2025-11-24 13:12:11] 2025-11-24 18:11:42,245 | INFO     | [payload] validate_post thread has finished
[2025-11-24 13:12:11] 2025-11-24 18:11:42,322 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 13:12:11] 2025-11-24 18:11:42,553 | INFO     | [data] control thread has finished
[2025-11-24 13:12:11] 2025-11-24 18:11:42,593 | INFO     | [payload] control thread has finished
[2025-11-24 13:12:11] 2025-11-24 18:11:42,713 | INFO     | all job control threads have been joined
[2025-11-24 13:12:11] 2025-11-24 18:11:42,745 | INFO     | [data] copytool_in thread has finished
[2025-11-24 13:12:11] 2025-11-24 18:11:42,780 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 13:12:11] 2025-11-24 18:11:42,801 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 13:12:11] 2025-11-24 18:11:42,898 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 13:12:11] 2025-11-24 18:11:43,024 | INFO     | [payload] failed_post thread has finished
[2025-11-24 13:12:11] 2025-11-24 18:11:43,064 | INFO     | [job] validate thread has finished
[2025-11-24 13:12:11] 2025-11-24 18:11:43,718 | INFO     | [job] control thread has finished
[2025-11-24 13:12:11] 2025-11-24 18:11:44,033 | INFO     | [data] copytool_out thread has finished
[2025-11-24 13:12:11] 2025-11-24 18:11:44,201 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 13:12:11] 2025-11-24 18:11:45,207 | INFO     | [job] queue monitor thread has finished
[2025-11-24 13:12:11] 2025-11-24 18:11:45,214 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 13:12:11] 2025-11-24 18:11:53,512 | INFO     | [monitor] cgroup control has ended
[2025-11-24 13:12:11] 2025-11-24 18:11:54,810 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140185926096704)>', '<ExcThread(monitor, started 140185475983104)>']
[2025-11-24 13:12:11] 2025-11-24 18:11:59,835 | INFO     | all workflow threads have been joined
[2025-11-24 13:12:11] 2025-11-24 18:11:59,836 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 13:12:11] 2025-11-24 18:11:59,836 | INFO     | traces error code: 0
[2025-11-24 13:12:11] 2025-11-24 18:11:59,836 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 13:12:11] 2025-11-24 18:12:11,213 | INFO     | PID=29922 has CPU usage=10.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-24 13:12:11] 2025-11-24 18:12:11,214 | INFO     | .. there are 4 such processes running
[2025-11-24 13:12:11] 2025-11-24 18:12:11,215 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 13:12:11] 2025-11-24 18:12:11,215 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 13:12:11] 2025-11-24 18:12:11,215 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 13:12:11] 2025-11-24 18:12:11,215 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 13:12:11] 2025-11-24 18:12:11,215 | INFO     | [monitor] control thread has ended
[2025-11-24 13:12:11] 2025-11-24 18:12:11,304 [wrapper] ==== pilot stdout END ====
[2025-11-24 13:12:11] 2025-11-24 18:12:11,307 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 13:12:11] 2025-11-24 18:12:11,309 [wrapper] pilotpid: 29922
[2025-11-24 13:12:11] 2025-11-24 18:12:11,311 [wrapper] Pilot exit status: 0
[2025-11-24 13:12:11] 2025-11-24 18:12:11,319 [wrapper] pandaids: 6895364639
[2025-11-24 13:12:11] 2025-11-24 18:12:11,363 [wrapper] cleanup supervisor_pilot 31095 29923
[2025-11-24 13:12:11] 2025-11-24 18:12:11,365 [wrapper] Test setup, not cleaning
[2025-11-24 13:12:11] 2025-11-24 18:12:11,367 [wrapper] apfmon messages muted
[2025-11-24 13:12:11] 2025-11-24 18:12:11,371 [wrapper] ==== wrapper stdout END ====
[2025-11-24 13:12:11] 2025-11-24 18:12:11,373 [wrapper] ==== wrapper stderr END ====
[2025-11-24 13:12:11]  *** Error codes and diagnostics ***
[2025-11-24 13:12:11]     "exeErrorCode": 0,
[2025-11-24 13:12:11]     "exeErrorDiag": "",
[2025-11-24 13:12:11]     "pilotErrorCode": 0,
[2025-11-24 13:12:11]     "pilotErrorDiag": "",
[2025-11-24 13:12:11]  *** Listing of results directory ***
[2025-11-24 13:12:11] total 1327680
[2025-11-24 13:12:11] -rw-r--r-- 1 boincer umatlas      5112 Nov 23 11:03 queuedata.json
[2025-11-24 13:12:11] -rw-r--r-- 1 boincer umatlas    576529 Nov 23 11:03 pilot3.tar.gz
[2025-11-24 13:12:11] -rwx------ 1 boincer umatlas     36292 Nov 23 11:03 runpilot2-wrapper.sh
[2025-11-24 13:12:11] -rw-r--r-- 1 boincer umatlas       100 Nov 23 19:43 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 13:12:11] -rwxr-xr-x 1 boincer umatlas      7986 Nov 23 19:43 run_atlas
[2025-11-24 13:12:11] -rw-r--r-- 1 boincer umatlas       105 Nov 23 19:43 job.xml
[2025-11-24 13:12:11] -rw-r--r-- 2 boincer umatlas 409238228 Nov 23 19:43 EVNT.47483658._000811.pool.root.1
[2025-11-24 13:12:11] -rw-r--r-- 2 boincer umatlas     15847 Nov 23 19:43 start_atlas.sh
[2025-11-24 13:12:11] drwxrwx--x 2 boincer umatlas      4096 Nov 23 19:43 shared
[2025-11-24 13:12:11] -rw-r--r-- 2 boincer umatlas    590101 Nov 23 19:43 input.tar.gz
[2025-11-24 13:12:11] -rw-r--r-- 1 boincer umatlas         0 Nov 23 19:43 boinc_lockfile
[2025-11-24 13:12:11] -rw-r--r-- 1 boincer umatlas      2786 Nov 23 19:43 pandaJob.out
[2025-11-24 13:12:11] -rw------- 1 boincer umatlas        57 Nov 23 19:43 setup.sh.local
[2025-11-24 13:12:11] -rw------- 1 boincer umatlas    989786 Nov 23 19:44 agis_schedconf.cvmfs.json
[2025-11-24 13:12:11] drwx------ 5 boincer umatlas      4096 Nov 23 19:44 pilot3
[2025-11-24 13:12:11] -rw-r--r-- 1 boincer umatlas       533 Nov 24 13:00 boinc_task_state.xml
[2025-11-24 13:12:11] -rw-r--r-- 1 boincer umatlas      6037 Nov 24 13:09 init_data.xml
[2025-11-24 13:12:11] -rw------- 1 boincer umatlas 924810945 Nov 24 13:10 HITS.47556137._007975.pool.root.1
[2025-11-24 13:12:11] -rw------- 1 boincer umatlas      1061 Nov 24 13:11 memory_monitor_summary.json
[2025-11-24 13:12:11] -rw------- 1 boincer umatlas   1516227 Nov 24 13:11 agis_ddmendpoints.agis.ALL.json
[2025-11-24 13:12:11] -rw------- 1 boincer umatlas   2223294 Nov 24 13:11 log.47556137._007975.job.log.tgz.1
[2025-11-24 13:12:11] -rw------- 1 boincer umatlas      8633 Nov 24 13:11 heartbeat.json
[2025-11-24 13:12:11] -rw-r--r-- 1 boincer umatlas      8192 Nov 24 13:12 boinc_mmap_file
[2025-11-24 13:12:11] -rw-r--r-- 1 boincer umatlas        29 Nov 24 13:12 wrapper_checkpoint.txt
[2025-11-24 13:12:11] -rw------- 1 boincer umatlas        95 Nov 24 13:12 pilot_heartbeat.json
[2025-11-24 13:12:11] -rw------- 1 boincer umatlas       821 Nov 24 13:12 pilotlog.txt
[2025-11-24 13:12:11] -rw------- 1 boincer umatlas   8565724 Nov 24 13:12 log.47556137._007975.job.log.1
[2025-11-24 13:12:11] -rw------- 1 boincer umatlas       353 Nov 24 13:12 output.list
[2025-11-24 13:12:11] -rw-r--r-- 1 boincer umatlas       620 Nov 24 13:12 runtime_log
[2025-11-24 13:12:11] -rw------- 1 boincer umatlas  10813440 Nov 24 13:12 result.tar.gz
[2025-11-24 13:12:11] -rw-r--r-- 1 boincer umatlas      9333 Nov 24 13:12 runtime_log.err
[2025-11-24 13:12:11] -rw------- 1 boincer umatlas       665 Nov 24 13:12 R8DNDmKkRh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmC2KKDmLnOnDm.diag
[2025-11-24 13:12:11] -rw-r--r-- 1 boincer umatlas     21336 Nov 24 13:12 stderr.txt
[2025-11-24 13:12:11] HITS file was successfully produced:
[2025-11-24 13:12:11] -rw------- 1 boincer umatlas 924810945 Nov 24 13:10 shared/HITS.pool.root.1
[2025-11-24 13:12:11]  *** Contents of shared directory: ***
[2025-11-24 13:12:11] total 1313948
[2025-11-24 13:12:11] -rw-r--r-- 2 boincer umatlas 409238228 Nov 23 19:43 ATLAS.root_0
[2025-11-24 13:12:11] -rw-r--r-- 2 boincer umatlas     15847 Nov 23 19:43 start_atlas.sh
[2025-11-24 13:12:11] -rw-r--r-- 2 boincer umatlas    590101 Nov 23 19:43 input.tar.gz
[2025-11-24 13:12:11] -rw------- 1 boincer umatlas 924810945 Nov 24 13:10 HITS.pool.root.1
[2025-11-24 13:12:11] -rw------- 1 boincer umatlas  10813440 Nov 24 13:12 result.tar.gz
13:12:13 (24922): run_atlas exited; CPU time 483271.520115
13:12:13 (24922): called boinc_finish(0)

</stderr_txt>
]]>

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