Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:02:37 (919845): wrapper (7.7.26015): starting
00:02:37 (919845): wrapper: running run_atlas (--nthreads 9)
[2025-11-24 00:02:37] Arguments: --nthreads 9
[2025-11-24 00:02:37] Threads: 9
[2025-11-24 00:02:37] Checking for CVMFS
[2025-11-24 00:02:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 00:02:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 00:02:38] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 00:02:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 00:02:40] 2.13.3.0 9371 26590 289944 153233 0 136 16477530 32935937 28140 16776704 0 146122976 99.776 83992422 34461 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-24 00:02:40] CVMFS is ok
[2025-11-24 00:02:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 00:02:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 00:02:40] Further information can be found at the LHC@home message board.
[2025-11-24 00:02:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 00:02:40] Checking for apptainer binary...
[2025-11-24 00:02:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 00:02:40] Running /usr/bin/apptainer --version
[2025-11-24 00:02:40] apptainer version 1.4.4-1.el9
[2025-11-24 00:02:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 00:02:40] c-8-1.aglt2.org
[2025-11-24 00:02:40] apptainer works
[2025-11-24 00:02:40] Set ATHENA_PROC_NUMBER=9
[2025-11-24 00:02:40] Set ATHENA_CORE_NUMBER=9
[2025-11-24 00:02:40] Starting ATLAS job with PandaID=6895353878
[2025-11-24 00:02:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 22:40:08]  *** The last 200 lines of the pilot log: ***
[2025-11-24 22:40:08] 2025-11-25 03:39:20,892 | INFO     | sum of deviations: 5996879770607.026
[2025-11-24 22:40:08] 2025-11-25 03:39:20,892 | INFO     | mean x: 1764001324.123874
[2025-11-24 22:40:08] 2025-11-25 03:39:20,892 | INFO     | mean y: 3094895.436186186
[2025-11-24 22:40:08] 2025-11-25 03:39:20,892 | INFO     | intersect: -14433158222.824087
[2025-11-24 22:40:08] 2025-11-25 03:39:20,895 | INFO     | chi2: 9.16149565716194
[2025-11-24 22:40:08] 2025-11-25 03:39:20,919 | INFO     | sum of square deviations: 724552749553.3262
[2025-11-24 22:40:08] 2025-11-25 03:39:21,052 | INFO     | sum of deviations: 6481751956716.038
[2025-11-24 22:40:08] 2025-11-25 03:39:21,052 | INFO     | mean x: 1764001171.6299925
[2025-11-24 22:40:08] 2025-11-25 03:39:21,052 | INFO     | mean y: 3103889.1446872647
[2025-11-24 22:40:08] 2025-11-25 03:39:21,052 | INFO     | intersect: -15777414579.539383
[2025-11-24 22:40:08] 2025-11-25 03:39:21,054 | INFO     | chi2: 5.905843650010411
[2025-11-24 22:40:08] 2025-11-25 03:39:21,054 | INFO     | current chi2=5.905843650010411 (change=35.53625007295009 %)
[2025-11-24 22:40:08] 2025-11-25 03:39:21,056 | INFO     | sum of square deviations: 716393550432.032
[2025-11-24 22:40:08] 2025-11-25 03:39:21,137 | INFO     | sum of deviations: 6750428398988.284
[2025-11-24 22:40:08] 2025-11-25 03:39:21,151 | INFO     | mean x: 1764001019.1346445
[2025-11-24 22:40:08] 2025-11-25 03:39:21,152 | INFO     | mean y: 3108902.987140696
[2025-11-24 22:40:08] 2025-11-25 03:39:21,152 | INFO     | intersect: -16618708208.891691
[2025-11-24 22:40:08] 2025-11-25 03:39:21,158 | INFO     | chi2: 4.201506584622568
[2025-11-24 22:40:08] 2025-11-25 03:39:21,159 | INFO     | current chi2=4.201506584622568 (change=28.85848604178402 %)
[2025-11-24 22:40:08] 2025-11-25 03:39:21,160 | INFO     | sum of square deviations: 708295598672.5112
[2025-11-24 22:40:08] 2025-11-25 03:39:21,233 | INFO     | PID=926692 has CPU usage=13.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 22:40:08] 2025-11-25 03:39:21,233 | INFO     | .. there are 42 such processes running
[2025-11-24 22:40:08] 2025-11-25 03:39:21,293 | INFO     | sum of deviations: 6698133738671.573
[2025-11-24 22:40:08] 2025-11-25 03:39:21,293 | INFO     | mean x: 1764000866.637054
[2025-11-24 22:40:08] 2025-11-25 03:39:21,293 | INFO     | mean y: 3107918.2543659834
[2025-11-24 22:40:08] 2025-11-25 03:39:21,294 | INFO     | intersect: -16678506003.972738
[2025-11-24 22:40:08] 2025-11-25 03:39:21,296 | INFO     | chi2: 4.196212904509147
[2025-11-24 22:40:08] 2025-11-25 03:39:21,296 | INFO     | current chi2=4.196212904509147 (change=0.12599480702461202 %)
[2025-11-24 22:40:08] 2025-11-25 03:39:21,296 | INFO     | right removable region: 1316
[2025-11-24 22:40:08] 2025-11-25 03:39:21,302 | INFO     | sum of square deviations: 724551430123.3256
[2025-11-24 22:40:08] 2025-11-25 03:39:21,347 | INFO     | sum of deviations: 5485185120040.585
[2025-11-24 22:40:08] 2025-11-25 03:39:21,348 | INFO     | mean x: 1764001476.6299925
[2025-11-24 22:40:08] 2025-11-25 03:39:21,348 | INFO     | mean y: 3104383.7995478525
[2025-11-24 22:40:08] 2025-11-25 03:39:21,348 | INFO     | intersect: -13351192149.289248
[2025-11-24 22:40:08] 2025-11-25 03:39:21,350 | INFO     | chi2: 5.95789742939448
[2025-11-24 22:40:08] 2025-11-25 03:39:21,350 | INFO     | current chi2=5.95789742939448 (change=34.968070145435995 %)
[2025-11-24 22:40:08] 2025-11-25 03:39:21,352 | INFO     | sum of square deviations: 716391558169.0984
[2025-11-24 22:40:08] 2025-11-25 03:39:21,397 | INFO     | sum of deviations: 5271278024456.538
[2025-11-24 22:40:08] 2025-11-25 03:39:21,398 | INFO     | mean x: 1764001629.1316187
[2025-11-24 22:40:08] 2025-11-25 03:39:21,398 | INFO     | mean y: 3108377.767019667
[2025-11-24 22:40:08] 2025-11-25 03:39:21,398 | INFO     | intersect: -12976585361.940882
[2025-11-24 22:40:08] 2025-11-25 03:39:21,400 | INFO     | chi2: 5.44399468944639
[2025-11-24 22:40:08] 2025-11-25 03:39:21,400 | INFO     | current chi2=5.44399468944639 (change=8.625572125707437 %)
[2025-11-24 22:40:08] 2025-11-25 03:39:21,400 | INFO     | left removable region: 20
[2025-11-24 22:40:08] 2025-11-25 03:39:21,402 | INFO     | sum of square deviations: 674949000259.1599
[2025-11-24 22:40:08] 2025-11-25 03:39:21,445 | INFO     | sum of deviations: 5699211072382.193
[2025-11-24 22:40:08] 2025-11-25 03:39:21,446 | INFO     | mean x: 1764001446.1412036
[2025-11-24 22:40:08] 2025-11-25 03:39:21,446 | INFO     | mean y: 3126635.6929012346
[2025-11-24 22:40:08] 2025-11-25 03:39:21,446 | INFO     | intersect: -14891949243.64901
[2025-11-24 22:40:08] 2025-11-25 03:39:21,448 | INFO     | chi2: 0.29681160897762976
[2025-11-24 22:40:08] 2025-11-25 03:39:21,448 | INFO     | current memory leak: 8.44 B/s (using 1296 data points, chi2=0.30)
[2025-11-24 22:40:08] 2025-11-25 03:39:21,449 | INFO     | could have reported an average CPU frequency of 2599 MHz (48 samples)
[2025-11-24 22:40:08] 2025-11-25 03:39:21,450 | INFO     | ..............................
[2025-11-24 22:40:08] 2025-11-25 03:39:21,450 | INFO     | . Timing measurements:
[2025-11-24 22:40:08] 2025-11-25 03:39:21,450 | INFO     | . get job = 0 s
[2025-11-24 22:40:08] 2025-11-25 03:39:21,450 | INFO     | . initial setup = 4 s
[2025-11-24 22:40:08] 2025-11-25 03:39:21,450 | INFO     | . payload setup = 36 s
[2025-11-24 22:40:08] 2025-11-25 03:39:21,450 | INFO     | . stage-in = 0 s
[2025-11-24 22:40:08] 2025-11-25 03:39:21,450 | INFO     | . payload execution = 81236 s
[2025-11-24 22:40:08] 2025-11-25 03:39:21,450 | INFO     | . stage-out = 4 s
[2025-11-24 22:40:08] 2025-11-25 03:39:21,451 | INFO     | . log creation = 1 s
[2025-11-24 22:40:08] 2025-11-25 03:39:21,451 | INFO     | ..............................
[2025-11-24 22:40:08] 2025-11-25 03:39:21,563 | INFO     | 
[2025-11-24 22:40:08] 2025-11-25 03:39:21,564 | INFO     | job summary report
[2025-11-24 22:40:08] 2025-11-25 03:39:21,564 | INFO     | --------------------------------------------------
[2025-11-24 22:40:08] 2025-11-25 03:39:21,564 | INFO     | PanDA job id: 6895353878
[2025-11-24 22:40:08] 2025-11-25 03:39:21,564 | INFO     | task id: 47556149
[2025-11-24 22:40:08] 2025-11-25 03:39:21,564 | INFO     | errors: (none)
[2025-11-24 22:40:08] 2025-11-25 03:39:21,564 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 22:40:08] 2025-11-25 03:39:21,564 | INFO     | pilot state: finished 
[2025-11-24 22:40:08] 2025-11-25 03:39:21,565 | INFO     | transexitcode: 0
[2025-11-24 22:40:08] 2025-11-25 03:39:21,565 | INFO     | exeerrorcode: 0
[2025-11-24 22:40:08] 2025-11-25 03:39:21,565 | INFO     | exeerrordiag: 
[2025-11-24 22:40:08] 2025-11-25 03:39:21,565 | INFO     | exitcode: 0
[2025-11-24 22:40:08] 2025-11-25 03:39:21,565 | INFO     | exitmsg: OK
[2025-11-24 22:40:08] 2025-11-25 03:39:21,565 | INFO     | cpuconsumptiontime: 316454 s
[2025-11-24 22:40:08] 2025-11-25 03:39:21,565 | INFO     | nevents: 1000
[2025-11-24 22:40:08] 2025-11-25 03:39:21,565 | INFO     | neventsw: 0
[2025-11-24 22:40:08] 2025-11-25 03:39:21,565 | INFO     | pid: 934507
[2025-11-24 22:40:08] 2025-11-25 03:39:21,566 | INFO     | pgrp: 934507
[2025-11-24 22:40:08] 2025-11-25 03:39:21,566 | INFO     | corecount: 9
[2025-11-24 22:40:08] 2025-11-25 03:39:21,566 | INFO     | event service: False
[2025-11-24 22:40:08] 2025-11-25 03:39:21,566 | INFO     | sizes: {0: 2298528, 1: 2298612, 2: 2298811, 3: 2298811, 14: 2298839, 22: 2299129, 25: 2299285, 81277: 2361943, 81282: 2371728, 81283: 2371784, 81296: 2372030}
[2025-11-24 22:40:08] 2025-11-25 03:39:21,566 | INFO     | --------------------------------------------------
[2025-11-24 22:40:08] 2025-11-25 03:39:21,566 | INFO     | 
[2025-11-24 22:40:08] 2025-11-25 03:39:21,566 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-24 22:40:08] 2025-11-25 03:39:21,633 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 22:40:08] 2025-11-25 03:39:21,633 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 22:40:08] 2025-11-25 03:39:21,633 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 22:40:08] 2025-11-25 03:39:21,634 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 22:40:08] 2025-11-25 03:39:21,634 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 22:40:08] 2025-11-25 03:39:21,634 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 22:40:08] 2025-11-25 03:39:21,634 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 22:40:08] 2025-11-25 03:39:21,634 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 22:40:08] 2025-11-25 03:39:21,634 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 22:40:08] 2025-11-25 03:39:21,634 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 22:40:08] 2025-11-25 03:39:21,634 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 22:40:08] 2025-11-25 03:39:21,635 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 22:40:08] 2025-11-25 03:39:21,635 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 22:40:08] 2025-11-25 03:39:21,635 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 22:40:08] 2025-11-25 03:39:21,635 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 22:40:08] 2025-11-25 03:39:21,635 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 22:40:08] 2025-11-25 03:39:21,635 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 22:40:08] 2025-11-25 03:39:21,635 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 22:40:08] 2025-11-25 03:39:21,635 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 22:40:08] 2025-11-25 03:39:21,635 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 22:40:08] 2025-11-25 03:39:21,636 | INFO     | job 6895353878 has completed (purged errors)
[2025-11-24 22:40:08] 2025-11-25 03:39:21,636 | INFO     | overall cleanup function is called
[2025-11-24 22:40:08] 2025-11-25 03:39:22,654 | INFO     | --- collectZombieJob: --- 10, [934507]
[2025-11-24 22:40:08] 2025-11-25 03:39:22,654 | INFO     | zombie collector waiting for pid 934507
[2025-11-24 22:40:08] 2025-11-25 03:39:22,655 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 22:40:08] 2025-11-25 03:39:22,655 | INFO     | collected zombie processes
[2025-11-24 22:40:08] 2025-11-25 03:39:22,655 | INFO     | will attempt to kill all subprocesses of pid=934507
[2025-11-24 22:40:08] 2025-11-25 03:39:23,264 | INFO     | process IDs to be killed: [934507] (in reverse order)
[2025-11-24 22:40:08] 2025-11-25 03:39:23,464 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 22:40:08] 2025-11-25 03:39:23,465 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 22:40:08] 2025-11-25 03:39:23,482 | INFO     | did not find any defunct processes belonging to 934507
[2025-11-24 22:40:08] 2025-11-25 03:39:23,499 | INFO     | did not find any defunct processes belonging to 934507
[2025-11-24 22:40:08] 2025-11-25 03:39:23,520 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 22:40:08] 2025-11-25 03:39:23,520 | INFO     | ready for new job
[2025-11-24 22:40:08] 2025-11-25 03:39:23,520 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 22:40:08] 2025-11-25 03:39:23,525 | INFO     | ***************************************
[2025-11-24 22:40:08] 2025-11-25 03:39:23,526 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 22:40:08] 2025-11-25 03:39:23,526 | INFO     | ***************************************
[2025-11-24 22:40:08] 2025-11-25 03:39:23,526 | INFO     | 
[2025-11-24 22:40:08] 2025-11-25 03:39:23,528 | INFO     | architecture information:
[2025-11-24 22:40:08] 2025-11-25 03:39:23,529 | INFO     | executing command: cat /etc/os-release
[2025-11-24 22:40:08] 2025-11-25 03:39:23,560 | INFO     | cat /etc/os-release:
[2025-11-24 22:40:08] NAME="CentOS Linux"
[2025-11-24 22:40:08] VERSION="7 (Core)"
[2025-11-24 22:40:08] ID="centos"
[2025-11-24 22:40:08] ID_LIKE="rhel fedora"
[2025-11-24 22:40:08] VERSION_ID="7"
[2025-11-24 22:40:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 22:40:08] ANSI_COLOR="0;31"
[2025-11-24 22:40:08] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 22:40:08] HOME_URL="https://www.centos.org/"
[2025-11-24 22:40:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 22:40:08] 
[2025-11-24 22:40:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 22:40:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 22:40:08] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 22:40:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 22:40:08] 
[2025-11-24 22:40:08] 2025-11-25 03:39:23,560 | INFO     | ***************************************
[2025-11-24 22:40:08] 2025-11-25 03:39:24,063 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-24 22:40:08] 2025-11-25 03:39:24,081 | INFO     | sufficient remaining disk space (72267857920 B)
[2025-11-24 22:40:08] 2025-11-25 03:39:24,082 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 22:40:08] 2025-11-25 03:39:24,082 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 22:40:08] 2025-11-25 03:39:24,082 | INFO     | update_server=False
[2025-11-24 22:40:08] 2025-11-25 03:39:24,082 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 22:40:08] 2025-11-25 03:39:24,083 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 22:40:08] 2025-11-25 03:39:24,292 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-24 22:40:08] 2025-11-25 03:39:24,293 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-24 22:40:08] 2025-11-25 03:39:24,293 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 22:40:08] 2025-11-25 03:39:24,293 | INFO     | will abort loop
[2025-11-24 22:40:08] 2025-11-25 03:39:24,336 | INFO     | all job control threads have been joined
[2025-11-24 22:40:08] 2025-11-25 03:39:25,094 | INFO     | [job] retrieve thread has finished
[2025-11-24 22:40:08] 2025-11-25 03:39:25,163 | INFO     | all data control threads have been joined
[2025-11-24 22:40:08] 2025-11-25 03:39:25,190 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 22:40:08] 2025-11-25 03:39:25,298 | INFO     | [job] job monitor thread has finished
[2025-11-24 22:40:08] 2025-11-25 03:39:25,327 | INFO     | all payload control threads have been joined
[2025-11-24 22:40:08] 2025-11-25 03:39:25,341 | INFO     | [job] control thread has finished
[2025-11-24 22:40:08] 2025-11-25 03:39:25,425 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 22:40:08] 2025-11-25 03:39:25,526 | INFO     | [data] copytool_in thread has finished
[2025-11-24 22:40:08] 2025-11-25 03:39:25,538 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 22:40:08] 2025-11-25 03:39:25,613 | INFO     | [payload] validate_post thread has finished
[2025-11-24 22:40:08] 2025-11-25 03:39:25,701 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 22:40:08] 2025-11-25 03:39:25,950 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 22:40:08] 2025-11-25 03:39:26,169 | INFO     | [data] control thread has finished
[2025-11-24 22:40:08] 2025-11-25 03:39:26,196 | INFO     | [payload] failed_post thread has finished
[2025-11-24 22:40:08] 2025-11-25 03:39:26,338 | INFO     | [payload] control thread has finished
[2025-11-24 22:40:08] 2025-11-25 03:39:26,443 | INFO     | [job] validate thread has finished
[2025-11-24 22:40:08] 2025-11-25 03:39:26,591 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 22:40:08] 2025-11-25 03:39:27,197 | INFO     | [data] copytool_out thread has finished
[2025-11-24 22:40:08] 2025-11-25 03:39:27,596 | INFO     | [job] queue monitor thread has finished
[2025-11-24 22:40:08] 2025-11-25 03:39:28,177 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 22:40:08] 2025-11-25 03:39:54,148 | INFO     | PID=926692 has CPU usage=5.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-24 22:40:08] 2025-11-25 03:39:54,149 | INFO     | .. there are 42 such processes running
[2025-11-24 22:40:08] 2025-11-25 03:39:54,150 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 22:40:08] 2025-11-25 03:39:54,150 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 22:40:08] 2025-11-25 03:39:54,150 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 22:40:08] 2025-11-25 03:40:01,916 | INFO     | [monitor] cgroup control has ended
[2025-11-24 22:40:08] 2025-11-25 03:40:03,262 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140330787632960)>', '<ExcThread(monitor, started 140329961367296)>']
[2025-11-24 22:40:08] 2025-11-25 03:40:04,217 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 22:40:08] 2025-11-25 03:40:04,217 | INFO     | [monitor] control thread has ended
[2025-11-24 22:40:08] 2025-11-25 03:40:08,287 | INFO     | all workflow threads have been joined
[2025-11-24 22:40:08] 2025-11-25 03:40:08,287 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 22:40:08] 2025-11-25 03:40:08,287 | INFO     | traces error code: 0
[2025-11-24 22:40:08] 2025-11-25 03:40:08,287 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 22:40:08] 2025-11-25 03:40:08,478 [wrapper] ==== pilot stdout END ====
[2025-11-24 22:40:08] 2025-11-25 03:40:08,503 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 22:40:08] 2025-11-25 03:40:08,533 [wrapper] pilotpid: 926692
[2025-11-24 22:40:08] 2025-11-25 03:40:08,561 [wrapper] Pilot exit status: 0
[2025-11-24 22:40:08] 2025-11-25 03:40:08,650 [wrapper] pandaids: 6895353878
[2025-11-24 22:40:08] 2025-11-25 03:40:08,745 [wrapper] cleanup supervisor_pilot 1137226 926693
[2025-11-24 22:40:08] 2025-11-25 03:40:08,749 [wrapper] Test setup, not cleaning
[2025-11-24 22:40:08] 2025-11-25 03:40:08,751 [wrapper] apfmon messages muted
[2025-11-24 22:40:08] 2025-11-25 03:40:08,765 [wrapper] ==== wrapper stdout END ====
[2025-11-24 22:40:08] 2025-11-25 03:40:08,768 [wrapper] ==== wrapper stderr END ====
[2025-11-24 22:40:08]  *** Error codes and diagnostics ***
[2025-11-24 22:40:08]     "exeErrorCode": 0,
[2025-11-24 22:40:08]     "exeErrorDiag": "",
[2025-11-24 22:40:08]     "pilotErrorCode": 0,
[2025-11-24 22:40:08]     "pilotErrorDiag": "",
[2025-11-24 22:40:08]  *** Listing of results directory ***
[2025-11-24 22:40:08] total 1338452
[2025-11-24 22:40:08] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 00:21 pilot3.tar.gz
[2025-11-24 22:40:08] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 00:24 queuedata.json
[2025-11-24 22:40:08] -rwx------. 1 boincer umatlas     36292 Nov 23 00:25 runpilot2-wrapper.sh
[2025-11-24 22:40:08] -rw-r--r--. 1 boincer umatlas       100 Nov 24 00:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 22:40:08] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 00:02 run_atlas
[2025-11-24 22:40:08] -rw-r--r--. 1 boincer umatlas       105 Nov 24 00:02 job.xml
[2025-11-24 22:40:08] -rw-r--r--. 2 boincer umatlas 412848764 Nov 24 00:02 EVNT.47483658._001140.pool.root.1
[2025-11-24 22:40:08] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 00:02 start_atlas.sh
[2025-11-24 22:40:08] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 00:02 shared
[2025-11-24 22:40:08] -rw-r--r--. 2 boincer umatlas    590104 Nov 24 00:02 input.tar.gz
[2025-11-24 22:40:08] -rw-r--r--. 1 boincer umatlas         0 Nov 24 00:02 boinc_lockfile
[2025-11-24 22:40:08] -rw-r--r--. 1 boincer umatlas      2784 Nov 24 00:02 pandaJob.out
[2025-11-24 22:40:08] -rw-------. 1 boincer umatlas        57 Nov 24 00:02 setup.sh.local
[2025-11-24 22:40:08] -rw-------. 1 boincer umatlas    989786 Nov 24 00:03 agis_schedconf.cvmfs.json
[2025-11-24 22:40:08] drwx------. 5 boincer umatlas      4096 Nov 24 00:03 pilot3
[2025-11-24 22:40:08] -rw-r--r--. 1 boincer umatlas       533 Nov 24 22:28 boinc_task_state.xml
[2025-11-24 22:40:08] -rw-------. 1 boincer umatlas 928257423 Nov 24 22:38 HITS.47556149._001268.pool.root.1
[2025-11-24 22:40:08] -rw-------. 1 boincer umatlas      1069 Nov 24 22:38 memory_monitor_summary.json
[2025-11-24 22:40:08] -rw-------. 1 boincer umatlas   1516227 Nov 24 22:39 agis_ddmendpoints.agis.ALL.json
[2025-11-24 22:40:08] -rw-------. 1 boincer umatlas   2508426 Nov 24 22:39 log.47556149._001268.job.log.tgz.1
[2025-11-24 22:40:08] -rw-------. 1 boincer umatlas      8666 Nov 24 22:39 heartbeat.json
[2025-11-24 22:40:08] -rw-------. 1 boincer umatlas        95 Nov 24 22:39 pilot_heartbeat.json
[2025-11-24 22:40:08] -rw-r--r--. 1 boincer umatlas      6659 Nov 24 22:39 init_data.xml
[2025-11-24 22:40:08] -rw-r--r--. 1 boincer umatlas      8192 Nov 24 22:40 boinc_mmap_file
[2025-11-24 22:40:08] -rw-r--r--. 1 boincer umatlas        29 Nov 24 22:40 wrapper_checkpoint.txt
[2025-11-24 22:40:08] -rw-------. 1 boincer umatlas      5009 Nov 24 22:40 pilotlog.txt
[2025-11-24 22:40:08] -rw-------. 1 boincer umatlas  10265112 Nov 24 22:40 log.47556149._001268.job.log.1
[2025-11-24 22:40:08] -rw-------. 1 boincer umatlas       353 Nov 24 22:40 output.list
[2025-11-24 22:40:08] -rw-r--r--. 1 boincer umatlas       620 Nov 24 22:40 runtime_log
[2025-11-24 22:40:08] -rw-------. 1 boincer umatlas  12789760 Nov 24 22:40 result.tar.gz
[2025-11-24 22:40:08] -rw-r--r--. 1 boincer umatlas      9328 Nov 24 22:40 runtime_log.err
[2025-11-24 22:40:08] -rw-------. 1 boincer umatlas       662 Nov 24 22:40 78TKDmWmHh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmhRIKDmgxs9lm.diag
[2025-11-24 22:40:08] -rw-r--r--. 1 boincer umatlas     21302 Nov 24 22:40 stderr.txt
[2025-11-24 22:40:08] HITS file was successfully produced:
[2025-11-24 22:40:08] -rw-------. 1 boincer umatlas 928257423 Nov 24 22:38 shared/HITS.pool.root.1
[2025-11-24 22:40:08]  *** Contents of shared directory: ***
[2025-11-24 22:40:08] total 1322776
[2025-11-24 22:40:08] -rw-r--r--. 2 boincer umatlas 412848764 Nov 24 00:02 ATLAS.root_0
[2025-11-24 22:40:08] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 00:02 start_atlas.sh
[2025-11-24 22:40:08] -rw-r--r--. 2 boincer umatlas    590104 Nov 24 00:02 input.tar.gz
[2025-11-24 22:40:08] -rw-------. 1 boincer umatlas 928257423 Nov 24 22:38 HITS.pool.root.1
[2025-11-24 22:40:08] -rw-------. 1 boincer umatlas  12789760 Nov 24 22:40 result.tar.gz
22:40:10 (919845): run_atlas exited; CPU time 319059.488106
22:40:10 (919845): called boinc_finish(0)

</stderr_txt>
]]>

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