Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
23:16:42 (511967): wrapper (7.7.26015): starting
23:16:42 (511967): wrapper: running run_atlas (--nthreads 9)
[2025-11-23 23:16:42] Arguments: --nthreads 9
[2025-11-23 23:16:42] Threads: 9
[2025-11-23 23:16:42] Checking for CVMFS
[2025-11-23 23:16:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 23:16:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 23:16:43] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 23:16:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 23:16:45] 2.13.2.0 3240580 25502 167528 153233 3 57 25686828 40960001 9488 16776704 0 30352147 99.736 17723967 37855 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-23 23:16:45] CVMFS is ok
[2025-11-23 23:16:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 23:16:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 23:16:45] Further information can be found at the LHC@home message board.
[2025-11-23 23:16:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 23:16:45] Checking for apptainer binary...
[2025-11-23 23:16:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 23:16:45] Running /usr/bin/apptainer --version
[2025-11-23 23:16:45] apptainer version 1.4.4-1.el9
[2025-11-23 23:16:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 23:16:46] c-210-37-4.aglt2.org
[2025-11-23 23:16:46] apptainer works
[2025-11-23 23:16:46] Set ATHENA_PROC_NUMBER=9
[2025-11-23 23:16:46] Set ATHENA_CORE_NUMBER=9
[2025-11-23 23:16:46] Starting ATLAS job with PandaID=6895353429
[2025-11-23 23:16:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 22:25:16]  *** The last 200 lines of the pilot log: ***
[2025-11-24 22:25:16] 2025-11-25 03:24:40,638 | INFO     | fitting pss+swap vs Time
[2025-11-24 22:25:16] 2025-11-25 03:24:40,640 | INFO     | sum of square deviations: 781671123289.1942
[2025-11-24 22:25:16] 2025-11-25 03:24:40,680 | INFO     | sum of deviations: 6008578821768.958
[2025-11-24 22:25:16] 2025-11-25 03:24:40,680 | INFO     | mean x: 1763999539.1454813
[2025-11-24 22:25:16] 2025-11-25 03:24:40,680 | INFO     | mean y: 3061610.252755327
[2025-11-24 22:25:16] 2025-11-25 03:24:40,681 | INFO     | intersect: -13556516013.54337
[2025-11-24 22:25:16] 2025-11-25 03:24:40,682 | INFO     | chi2: 12.959017693975465
[2025-11-24 22:25:16] 2025-11-25 03:24:40,684 | INFO     | sum of square deviations: 773090925699.4535
[2025-11-24 22:25:16] 2025-11-25 03:24:40,726 | INFO     | sum of deviations: 6517140301205.642
[2025-11-24 22:25:16] 2025-11-25 03:24:40,734 | INFO     | mean x: 1763999386.6792035
[2025-11-24 22:25:16] 2025-11-25 03:24:40,734 | INFO     | mean y: 3070647.452064897
[2025-11-24 22:25:16] 2025-11-25 03:24:40,734 | INFO     | intersect: -14867407212.351894
[2025-11-24 22:25:16] 2025-11-25 03:24:40,736 | INFO     | chi2: 9.511540284182674
[2025-11-24 22:25:16] 2025-11-25 03:24:40,736 | INFO     | current chi2=9.511540284182674 (change=26.602922314053888 %)
[2025-11-24 22:25:16] 2025-11-25 03:24:40,741 | INFO     | sum of square deviations: 764573303589.1376
[2025-11-24 22:25:16] 2025-11-25 03:24:41,016 | INFO     | sum of deviations: 6820765992584.804
[2025-11-24 22:25:16] 2025-11-25 03:24:41,017 | INFO     | mean x: 1763999234.2087343
[2025-11-24 22:25:16] 2025-11-25 03:24:41,019 | INFO     | mean y: 3076078.440414508
[2025-11-24 22:25:16] 2025-11-25 03:24:41,019 | INFO     | intersect: -15733578511.976952
[2025-11-24 22:25:16] 2025-11-25 03:24:41,029 | INFO     | chi2: 7.940899990498739
[2025-11-24 22:25:16] 2025-11-25 03:24:41,031 | INFO     | current chi2=7.940899990498739 (change=16.512996284059792 %)
[2025-11-24 22:25:16] 2025-11-25 03:24:41,032 | INFO     | right removable region: 1350
[2025-11-24 22:25:16] 2025-11-25 03:24:41,041 | INFO     | sum of square deviations: 773083333029.4546
[2025-11-24 22:25:16] 2025-11-25 03:24:41,241 | INFO     | sum of deviations: 5419821110537.862
[2025-11-24 22:25:16] 2025-11-25 03:24:41,241 | INFO     | mean x: 1763999691.6792035
[2025-11-24 22:25:16] 2025-11-25 03:24:41,242 | INFO     | mean y: 3072066.1261061947
[2025-11-24 22:25:16] 2025-11-25 03:24:41,242 | INFO     | intersect: -12363722507.59803
[2025-11-24 22:25:16] 2025-11-25 03:24:41,244 | INFO     | chi2: 8.678066855945183
[2025-11-24 22:25:16] 2025-11-25 03:24:41,244 | INFO     | current chi2=8.678066855945183 (change=33.03453193076864 %)
[2025-11-24 22:25:16] 2025-11-25 03:24:41,254 | INFO     | sum of square deviations: 764558613716.6042
[2025-11-24 22:25:16] 2025-11-25 03:24:41,469 | INFO     | sum of deviations: 4952945351944.872
[2025-11-24 22:25:16] 2025-11-25 03:24:41,470 | INFO     | mean x: 1763999844.2131755
[2025-11-24 22:25:16] 2025-11-25 03:24:41,470 | INFO     | mean y: 3080418.29903775
[2025-11-24 22:25:16] 2025-11-25 03:24:41,470 | INFO     | intersect: -11424421244.0727
[2025-11-24 22:25:16] 2025-11-25 03:24:41,488 | INFO     | chi2: 6.131441765568782
[2025-11-24 22:25:16] 2025-11-25 03:24:41,488 | INFO     | current chi2=6.131441765568782 (change=29.345534352869784 %)
[2025-11-24 22:25:16] 2025-11-25 03:24:41,490 | INFO     | sum of square deviations: 756097226485.0593
[2025-11-24 22:25:16] 2025-11-25 03:24:41,679 | INFO     | sum of deviations: 4703923426159.586
[2025-11-24 22:25:16] 2025-11-25 03:24:41,680 | INFO     | mean x: 1763999996.742942
[2025-11-24 22:25:16] 2025-11-25 03:24:41,680 | INFO     | mean y: 3084903.588410104
[2025-11-24 22:25:16] 2025-11-25 03:24:41,680 | INFO     | intersect: -10971325023.821268
[2025-11-24 22:25:16] 2025-11-25 03:24:41,681 | INFO     | chi2: 5.426838402443682
[2025-11-24 22:25:16] 2025-11-25 03:24:41,681 | INFO     | current chi2=5.426838402443682 (change=11.491642423839247 %)
[2025-11-24 22:25:16] 2025-11-25 03:24:41,682 | INFO     | left removable region: 30
[2025-11-24 22:25:16] 2025-11-25 03:24:41,703 | INFO     | sum of square deviations: 713120597024.1086
[2025-11-24 22:25:16] 2025-11-25 03:24:41,832 | INFO     | sum of deviations: 5256701692040.029
[2025-11-24 22:25:16] 2025-11-25 03:24:41,833 | INFO     | mean x: 1764000118.871212
[2025-11-24 22:25:16] 2025-11-25 03:24:41,833 | INFO     | mean y: 3105338.8295454546
[2025-11-24 22:25:16] 2025-11-25 03:24:41,834 | INFO     | intersect: -13000056326.00682
[2025-11-24 22:25:16] 2025-11-25 03:24:41,841 | INFO     | chi2: 0.20919806921535003
[2025-11-24 22:25:16] 2025-11-25 03:24:41,842 | INFO     | current memory leak: 7.37 B/s (using 1320 data points, chi2=0.21)
[2025-11-24 22:25:16] 2025-11-25 03:24:41,852 | INFO     | could have reported an average CPU frequency of 2822 MHz (49 samples)
[2025-11-24 22:25:16] 2025-11-25 03:24:41,852 | INFO     | ..............................
[2025-11-24 22:25:16] 2025-11-25 03:24:41,852 | INFO     | . Timing measurements:
[2025-11-24 22:25:16] 2025-11-25 03:24:41,852 | INFO     | . get job = 0 s
[2025-11-24 22:25:16] 2025-11-25 03:24:41,852 | INFO     | . initial setup = 8 s
[2025-11-24 22:25:16] 2025-11-25 03:24:41,854 | INFO     | . payload setup = 53 s
[2025-11-24 22:25:16] 2025-11-25 03:24:41,855 | INFO     | . stage-in = 0 s
[2025-11-24 22:25:16] 2025-11-25 03:24:41,855 | INFO     | . payload execution = 83021 s
[2025-11-24 22:25:16] 2025-11-25 03:24:41,855 | INFO     | . stage-out = 10 s
[2025-11-24 22:25:16] 2025-11-25 03:24:41,855 | INFO     | . log creation = 3 s
[2025-11-24 22:25:16] 2025-11-25 03:24:41,855 | INFO     | ..............................
[2025-11-24 22:25:16] 2025-11-25 03:24:41,871 | INFO     | PID=515995 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-24 22:25:16] 2025-11-25 03:24:41,912 | INFO     | .. there are 10 such processes running
[2025-11-24 22:25:16] 2025-11-25 03:24:42,126 | INFO     | 
[2025-11-24 22:25:16] 2025-11-25 03:24:42,126 | INFO     | job summary report
[2025-11-24 22:25:16] 2025-11-25 03:24:42,126 | INFO     | --------------------------------------------------
[2025-11-24 22:25:16] 2025-11-25 03:24:42,126 | INFO     | PanDA job id: 6895353429
[2025-11-24 22:25:16] 2025-11-25 03:24:42,126 | INFO     | task id: 47556137
[2025-11-24 22:25:16] 2025-11-25 03:24:42,126 | INFO     | errors: (none)
[2025-11-24 22:25:16] 2025-11-25 03:24:42,126 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 22:25:16] 2025-11-25 03:24:42,126 | INFO     | pilot state: finished 
[2025-11-24 22:25:16] 2025-11-25 03:24:42,126 | INFO     | transexitcode: 0
[2025-11-24 22:25:16] 2025-11-25 03:24:42,127 | INFO     | exeerrorcode: 0
[2025-11-24 22:25:16] 2025-11-25 03:24:42,127 | INFO     | exeerrordiag: 
[2025-11-24 22:25:16] 2025-11-25 03:24:42,127 | INFO     | exitcode: 0
[2025-11-24 22:25:16] 2025-11-25 03:24:42,127 | INFO     | exitmsg: OK
[2025-11-24 22:25:16] 2025-11-25 03:24:42,127 | INFO     | cpuconsumptiontime: 232109 s
[2025-11-24 22:25:16] 2025-11-25 03:24:42,127 | INFO     | nevents: 1000
[2025-11-24 22:25:16] 2025-11-25 03:24:42,127 | INFO     | neventsw: 0
[2025-11-24 22:25:16] 2025-11-25 03:24:42,127 | INFO     | pid: 526411
[2025-11-24 22:25:16] 2025-11-25 03:24:42,127 | INFO     | pgrp: 526411
[2025-11-24 22:25:16] 2025-11-25 03:24:42,127 | INFO     | corecount: 9
[2025-11-24 22:25:16] 2025-11-25 03:24:42,127 | INFO     | event service: False
[2025-11-24 22:25:16] 2025-11-25 03:24:42,127 | INFO     | sizes: {0: 2297979, 1: 2298664, 2: 2298863, 3: 2298863, 14: 2298891, 26: 2298919, 36: 2299337, 37: 2299365, 83078: 2363228, 83079: 2363227, 83090: 2373068, 83094: 
[2025-11-24 22:25:16] 2025-11-25 03:24:42,127 | INFO     | --------------------------------------------------
[2025-11-24 22:25:16] 2025-11-25 03:24:42,127 | INFO     | 
[2025-11-24 22:25:16] 2025-11-25 03:24:42,128 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-24 22:25:16] 2025-11-25 03:24:42,210 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 22:25:16] 2025-11-25 03:24:42,210 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 22:25:16] 2025-11-25 03:24:42,210 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 22:25:16] 2025-11-25 03:24:42,211 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 22:25:16] 2025-11-25 03:24:42,211 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 22:25:16] 2025-11-25 03:24:42,211 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 22:25:16] 2025-11-25 03:24:42,211 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 22:25:16] 2025-11-25 03:24:42,211 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 22:25:16] 2025-11-25 03:24:42,211 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 22:25:16] 2025-11-25 03:24:42,211 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 22:25:16] 2025-11-25 03:24:42,211 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 22:25:16] 2025-11-25 03:24:42,211 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 22:25:16] 2025-11-25 03:24:42,211 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 22:25:16] 2025-11-25 03:24:42,211 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 22:25:16] 2025-11-25 03:24:42,211 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 22:25:16] 2025-11-25 03:24:42,211 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 22:25:16] 2025-11-25 03:24:42,212 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 22:25:16] 2025-11-25 03:24:42,212 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 22:25:16] 2025-11-25 03:24:42,212 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 22:25:16] 2025-11-25 03:24:42,212 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 22:25:16] 2025-11-25 03:24:42,212 | INFO     | job 6895353429 has completed (purged errors)
[2025-11-24 22:25:16] 2025-11-25 03:24:42,213 | INFO     | overall cleanup function is called
[2025-11-24 22:25:16] 2025-11-25 03:24:43,255 | INFO     | --- collectZombieJob: --- 10, [526411]
[2025-11-24 22:25:16] 2025-11-25 03:24:43,255 | INFO     | zombie collector waiting for pid 526411
[2025-11-24 22:25:16] 2025-11-25 03:24:43,256 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 22:25:16] 2025-11-25 03:24:43,256 | INFO     | collected zombie processes
[2025-11-24 22:25:16] 2025-11-25 03:24:43,256 | INFO     | will attempt to kill all subprocesses of pid=526411
[2025-11-24 22:25:16] 2025-11-25 03:24:43,897 | INFO     | process IDs to be killed: [526411] (in reverse order)
[2025-11-24 22:25:16] 2025-11-25 03:24:44,099 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 22:25:16] 2025-11-25 03:24:44,100 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 22:25:16] 2025-11-25 03:24:44,179 | INFO     | did not find any defunct processes belonging to 526411
[2025-11-24 22:25:16] 2025-11-25 03:24:44,198 | INFO     | did not find any defunct processes belonging to 526411
[2025-11-24 22:25:16] 2025-11-25 03:24:44,204 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 22:25:16] 2025-11-25 03:24:44,205 | INFO     | ready for new job
[2025-11-24 22:25:16] 2025-11-25 03:24:44,261 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 22:25:16] 2025-11-25 03:24:44,322 | INFO     | ***************************************
[2025-11-24 22:25:16] 2025-11-25 03:24:44,322 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 22:25:16] 2025-11-25 03:24:44,322 | INFO     | ***************************************
[2025-11-24 22:25:16] 2025-11-25 03:24:44,322 | INFO     | 
[2025-11-24 22:25:16] 2025-11-25 03:24:44,357 | INFO     | architecture information:
[2025-11-24 22:25:16] 2025-11-25 03:24:44,373 | INFO     | executing command: cat /etc/os-release
[2025-11-24 22:25:16] 2025-11-25 03:24:44,434 | INFO     | cat /etc/os-release:
[2025-11-24 22:25:16] NAME="CentOS Linux"
[2025-11-24 22:25:16] VERSION="7 (Core)"
[2025-11-24 22:25:16] ID="centos"
[2025-11-24 22:25:16] ID_LIKE="rhel fedora"
[2025-11-24 22:25:16] VERSION_ID="7"
[2025-11-24 22:25:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 22:25:16] ANSI_COLOR="0;31"
[2025-11-24 22:25:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 22:25:16] HOME_URL="https://www.centos.org/"
[2025-11-24 22:25:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 22:25:16] 
[2025-11-24 22:25:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 22:25:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 22:25:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 22:25:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 22:25:16] 
[2025-11-24 22:25:16] 2025-11-25 03:24:44,434 | INFO     | ***************************************
[2025-11-24 22:25:16] 2025-11-25 03:24:44,940 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-24 22:25:16] 2025-11-25 03:24:44,984 | INFO     | sufficient remaining disk space (72161951744 B)
[2025-11-24 22:25:16] 2025-11-25 03:24:44,985 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 22:25:16] 2025-11-25 03:24:44,985 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 22:25:16] 2025-11-25 03:24:44,985 | INFO     | update_server=False
[2025-11-24 22:25:16] 2025-11-25 03:24:44,985 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 22:25:16] 2025-11-25 03:24:45,196 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 22:25:16] 2025-11-25 03:24:45,368 | INFO     | all data control threads have been joined
[2025-11-24 22:25:16] 2025-11-25 03:24:45,917 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 22:25:16] 2025-11-25 03:24:45,917 | INFO     | aborting loop
[2025-11-24 22:25:16] 2025-11-25 03:24:45,991 | INFO     | [job] retrieve thread has finished
[2025-11-24 22:25:16] 2025-11-25 03:24:46,183 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 22:25:16] 2025-11-25 03:24:46,247 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 22:25:16] 2025-11-25 03:24:46,378 | INFO     | [data] control thread has finished
[2025-11-24 22:25:16] 2025-11-25 03:24:46,383 | INFO     | all payload control threads have been joined
[2025-11-24 22:25:16] 2025-11-25 03:24:46,529 | INFO     | [data] copytool_in thread has finished
[2025-11-24 22:25:16] 2025-11-25 03:24:46,586 | INFO     | [monitor] cgroup control has ended
[2025-11-24 22:25:16] 2025-11-25 03:24:46,600 | INFO     | [job] validate thread has finished
[2025-11-24 22:25:16] 2025-11-25 03:24:46,605 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 22:25:16] 2025-11-25 03:24:46,684 | INFO     | all job control threads have been joined
[2025-11-24 22:25:16] 2025-11-25 03:24:46,815 | INFO     | [payload] failed_post thread has finished
[2025-11-24 22:25:16] 2025-11-25 03:24:46,924 | INFO     | [job] job monitor thread has finished
[2025-11-24 22:25:16] 2025-11-25 03:24:46,937 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 22:25:16] 2025-11-25 03:24:47,141 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 22:25:16] 2025-11-25 03:24:47,159 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 22:25:16] 2025-11-25 03:24:47,204 | INFO     | [data] copytool_out thread has finished
[2025-11-24 22:25:16] 2025-11-25 03:24:47,389 | INFO     | [payload] control thread has finished
[2025-11-24 22:25:16] 2025-11-25 03:24:47,585 | INFO     | [payload] validate_post thread has finished
[2025-11-24 22:25:16] 2025-11-25 03:24:47,699 | INFO     | [job] control thread has finished
[2025-11-24 22:25:16] 2025-11-25 03:24:48,147 | INFO     | [job] queue monitor thread has finished
[2025-11-24 22:25:16] 2025-11-25 03:24:50,946 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 22:25:16] 2025-11-25 03:24:52,985 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140382173448000)>', '<ExcThread(monitor, started 140381400327936)>']
[2025-11-24 22:25:16] 2025-11-25 03:24:58,012 | INFO     | all workflow threads have been joined
[2025-11-24 22:25:16] 2025-11-25 03:24:58,012 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 22:25:16] 2025-11-25 03:24:58,012 | INFO     | traces error code: 0
[2025-11-24 22:25:16] 2025-11-25 03:24:58,012 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 22:25:16] 2025-11-25 03:25:15,148 | INFO     | PID=515995 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-24 22:25:16] 2025-11-25 03:25:15,149 | INFO     | .. there are 10 such processes running
[2025-11-24 22:25:16] 2025-11-25 03:25:15,149 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 22:25:16] 2025-11-25 03:25:15,150 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 22:25:16] 2025-11-25 03:25:15,150 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 22:25:16] 2025-11-25 03:25:15,150 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 22:25:16] 2025-11-25 03:25:15,150 | INFO     | [monitor] control thread has ended
[2025-11-24 22:25:16] 2025-11-25 03:25:15,401 [wrapper] ==== pilot stdout END ====
[2025-11-24 22:25:16] 2025-11-25 03:25:15,421 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 22:25:16] 2025-11-25 03:25:15,431 [wrapper] pilotpid: 515995
[2025-11-24 22:25:16] 2025-11-25 03:25:15,436 [wrapper] Pilot exit status: 0
[2025-11-24 22:25:16] 2025-11-25 03:25:15,499 [wrapper] pandaids: 6895353429
[2025-11-24 22:25:16] 2025-11-25 03:25:15,682 [wrapper] cleanup supervisor_pilot 2888273 515996
[2025-11-24 22:25:16] 2025-11-25 03:25:15,686 [wrapper] Test setup, not cleaning
[2025-11-24 22:25:16] 2025-11-25 03:25:15,689 [wrapper] apfmon messages muted
[2025-11-24 22:25:16] 2025-11-25 03:25:15,693 [wrapper] ==== wrapper stdout END ====
[2025-11-24 22:25:16] 2025-11-25 03:25:15,696 [wrapper] ==== wrapper stderr END ====
[2025-11-24 22:25:16]  *** Error codes and diagnostics ***
[2025-11-24 22:25:16]     "exeErrorCode": 0,
[2025-11-24 22:25:16]     "exeErrorDiag": "",
[2025-11-24 22:25:16]     "pilotErrorCode": 0,
[2025-11-24 22:25:16]     "pilotErrorDiag": "",
[2025-11-24 22:25:16]  *** Listing of results directory ***
[2025-11-24 22:25:16] total 1325988
[2025-11-24 22:25:16] -rw-r--r--. 1 boincer umatlas    576529 Nov 22 23:55 pilot3.tar.gz
[2025-11-24 22:25:16] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 00:12 queuedata.json
[2025-11-24 22:25:16] -rwx------. 1 boincer umatlas     36292 Nov 23 00:13 runpilot2-wrapper.sh
[2025-11-24 22:25:16] -rw-r--r--. 1 boincer umatlas       100 Nov 23 23:16 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 22:25:16] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 23 23:16 run_atlas
[2025-11-24 22:25:16] -rw-r--r--. 1 boincer umatlas       105 Nov 23 23:16 job.xml
[2025-11-24 22:25:16] -rw-r--r--. 2 boincer umatlas 410209878 Nov 23 23:16 EVNT.47483658._000622.pool.root.1
[2025-11-24 22:25:16] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 23:16 start_atlas.sh
[2025-11-24 22:25:16] drwxrwx--x. 2 boincer umatlas      4096 Nov 23 23:16 shared
[2025-11-24 22:25:16] -rw-r--r--. 2 boincer umatlas    590100 Nov 23 23:16 input.tar.gz
[2025-11-24 22:25:16] -rw-r--r--. 1 boincer umatlas         0 Nov 23 23:16 boinc_lockfile
[2025-11-24 22:25:16] -rw-r--r--. 1 boincer umatlas      2786 Nov 23 23:16 pandaJob.out
[2025-11-24 22:25:16] -rw-------. 1 boincer umatlas        57 Nov 23 23:16 setup.sh.local
[2025-11-24 22:25:16] -rw-------. 1 boincer umatlas    989786 Nov 23 23:18 agis_schedconf.cvmfs.json
[2025-11-24 22:25:16] drwx------. 5 boincer umatlas      4096 Nov 23 23:18 pilot3
[2025-11-24 22:25:16] -rw-r--r--. 1 boincer umatlas       533 Nov 24 22:10 boinc_task_state.xml
[2025-11-24 22:25:16] -rw-r--r--. 1 boincer umatlas      6843 Nov 24 22:19 init_data.xml
[2025-11-24 22:25:16] -rw-------. 1 boincer umatlas 917489646 Nov 24 22:23 HITS.47556137._006180.pool.root.1
[2025-11-24 22:25:16] -rw-------. 1 boincer umatlas      1058 Nov 24 22:23 memory_monitor_summary.json
[2025-11-24 22:25:16] -rw-------. 1 boincer umatlas   1516227 Nov 24 22:24 agis_ddmendpoints.agis.ALL.json
[2025-11-24 22:25:16] -rw-------. 1 boincer umatlas   2510739 Nov 24 22:24 log.47556137._006180.job.log.tgz.1
[2025-11-24 22:25:16] -rw-------. 1 boincer umatlas      8623 Nov 24 22:24 heartbeat.json
[2025-11-24 22:25:16] -rw-r--r--. 1 boincer umatlas      8192 Nov 24 22:25 boinc_mmap_file
[2025-11-24 22:25:16] -rw-r--r--. 1 boincer umatlas        29 Nov 24 22:25 wrapper_checkpoint.txt
[2025-11-24 22:25:16] -rw-------. 1 boincer umatlas        95 Nov 24 22:25 pilot_heartbeat.json
[2025-11-24 22:25:16] -rw-------. 1 boincer umatlas       822 Nov 24 22:25 pilotlog.txt
[2025-11-24 22:25:16] -rw-------. 1 boincer umatlas  10591677 Nov 24 22:25 log.47556137._006180.job.log.1
[2025-11-24 22:25:16] -rw-------. 1 boincer umatlas       353 Nov 24 22:25 output.list
[2025-11-24 22:25:16] -rw-r--r--. 1 boincer umatlas       620 Nov 24 22:25 runtime_log
[2025-11-24 22:25:16] -rw-------. 1 boincer umatlas  13117440 Nov 24 22:25 result.tar.gz
[2025-11-24 22:25:16] -rw-------. 1 boincer umatlas       662 Nov 24 22:25 vMmNDmgaHh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm4dKKDmW5ErAo.diag
[2025-11-24 22:25:16] -rw-r--r--. 1 boincer umatlas      9353 Nov 24 22:25 runtime_log.err
[2025-11-24 22:25:16] -rw-r--r--. 1 boincer umatlas     21271 Nov 24 22:25 stderr.txt
[2025-11-24 22:25:16] HITS file was successfully produced:
[2025-11-24 22:25:16] -rw-------. 1 boincer umatlas 917489646 Nov 24 22:23 shared/HITS.pool.root.1
[2025-11-24 22:25:16]  *** Contents of shared directory: ***
[2025-11-24 22:25:16] total 1310000
[2025-11-24 22:25:16] -rw-r--r--. 2 boincer umatlas 410209878 Nov 23 23:16 ATLAS.root_0
[2025-11-24 22:25:16] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 23:16 start_atlas.sh
[2025-11-24 22:25:16] -rw-r--r--. 2 boincer umatlas    590100 Nov 23 23:16 input.tar.gz
[2025-11-24 22:25:16] -rw-------. 1 boincer umatlas 917489646 Nov 24 22:23 HITS.pool.root.1
[2025-11-24 22:25:16] -rw-------. 1 boincer umatlas  13117440 Nov 24 22:25 result.tar.gz
22:25:18 (511967): run_atlas exited; CPU time 233273.783963
22:25:18 (511967): called boinc_finish(0)

</stderr_txt>
]]>

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