Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:03:46 (2341035): wrapper (7.7.26015): starting
00:03:46 (2341035): wrapper: running run_atlas (--nthreads 12)
[2025-11-24 00:03:46] Arguments: --nthreads 12
[2025-11-24 00:03:46] Threads: 12
[2025-11-24 00:03:46] Checking for CVMFS
[2025-11-24 00:03:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 00:03:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 00:03:47] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 00:03:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 00:03:50] 2.13.3.0 11601 26725 225096 153233 3 370 31716567 32935937 22262 16776704 0 102135477 99.537 116599143 37517 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-24 00:03:50] CVMFS is ok
[2025-11-24 00:03:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 00:03:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 00:03:50] Further information can be found at the LHC@home message board.
[2025-11-24 00:03:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 00:03:50] Checking for apptainer binary...
[2025-11-24 00:03:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 00:03:50] Running /usr/bin/apptainer --version
[2025-11-24 00:03:50] apptainer version 1.4.4-1.el9
[2025-11-24 00:03:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 00:03:51] c6-6-39-4.aglt2.org
[2025-11-24 00:03:51] apptainer works
[2025-11-24 00:03:51] Set ATHENA_PROC_NUMBER=12
[2025-11-24 00:03:51] Set ATHENA_CORE_NUMBER=12
[2025-11-24 00:03:51] Starting ATLAS job with PandaID=6895345500
[2025-11-24 00:03:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
11:00:03 (2341035): BOINC client no longer exists - exiting
11:00:03 (2341035): timer handler: client dead, exiting
11:12:03 (196171): wrapper (7.7.26015): starting
11:12:03 (196171): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 11:12:03] Arguments: --nthreads 8
[2025-11-24 11:12:03] Threads: 8
[2025-11-24 11:12:03] This job has been restarted, cleaning up previous attempt
[2025-11-24 11:12:03] Checking for CVMFS
[2025-11-24 11:12:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 11:12:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 11:12:03] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 11:12:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 11:12:04] 2.13.3.0 11601 27393 218404 153250 0 153 17669968 32935936 16916 16776704 0 104433219 99.523 124176290 37990 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-24 11:12:04] CVMFS is ok
[2025-11-24 11:12:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 11:12:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 11:12:04] Further information can be found at the LHC@home message board.
[2025-11-24 11:12:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 11:12:04] Checking for apptainer binary...
[2025-11-24 11:12:04] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 11:12:04] Running /usr/bin/apptainer --version
[2025-11-24 11:12:04] apptainer version 1.4.4-1.el9
[2025-11-24 11:12:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 11:12:04] c6-6-39-4.aglt2.org
[2025-11-24 11:12:04] apptainer works
[2025-11-24 11:12:04] Set ATHENA_PROC_NUMBER=8
[2025-11-24 11:12:04] Set ATHENA_CORE_NUMBER=8
[2025-11-24 11:12:04] Starting ATLAS job with PandaID=6895345500
[2025-11-24 11:12:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 21:29:28]  *** The last 200 lines of the pilot log: ***
[2025-11-25 21:29:28] 2025-11-26 02:28:50,849 | INFO     | sum of deviations: 6124909042351.024
[2025-11-25 21:29:28] 2025-11-26 02:28:50,850 | INFO     | mean x: 1764062404.0964391
[2025-11-25 21:29:28] 2025-11-26 02:28:50,850 | INFO     | mean y: 2943528.8768545995
[2025-11-25 21:29:28] 2025-11-26 02:28:50,850 | INFO     | intersect: -4212023864.131803
[2025-11-25 21:29:28] 2025-11-26 02:28:50,853 | INFO     | chi2: 9.001992811788025
[2025-11-25 21:29:28] 2025-11-26 02:28:50,860 | INFO     | sum of square deviations: 2544449667616.8984
[2025-11-25 21:29:28] 2025-11-26 02:28:51,044 | INFO     | sum of deviations: 6815075990153.483
[2025-11-25 21:29:28] 2025-11-26 02:28:51,044 | INFO     | mean x: 1764062251.6028755
[2025-11-25 21:29:28] 2025-11-26 02:28:51,044 | INFO     | mean y: 2949077.98810114
[2025-11-25 21:29:28] 2025-11-26 02:28:51,044 | INFO     | intersect: -4721930509.547508
[2025-11-25 21:29:28] 2025-11-26 02:28:51,047 | INFO     | chi2: 5.925657450231296
[2025-11-25 21:29:28] 2025-11-26 02:28:51,047 | INFO     | current chi2=5.925657450231296 (change=34.173937103441105 %)
[2025-11-25 21:29:28] 2025-11-26 02:28:51,050 | INFO     | sum of square deviations: 2525575387113.1636
[2025-11-25 21:29:28] 2025-11-26 02:28:51,215 | INFO     | time since job start (123396s) is within the limit (172800.0s)
[2025-11-25 21:29:28] 2025-11-26 02:28:51,231 | INFO     | sum of deviations: 7404699600875.055
[2025-11-25 21:29:28] 2025-11-26 02:28:51,231 | INFO     | mean x: 1764062099.108847
[2025-11-25 21:29:28] 2025-11-26 02:28:51,231 | INFO     | mean y: 2953839.986083499
[2025-11-25 21:29:28] 2025-11-26 02:28:51,231 | INFO     | intersect: -5169075467.806979
[2025-11-25 21:29:28] 2025-11-26 02:28:51,233 | INFO     | chi2: 3.4614141159265417
[2025-11-25 21:29:28] 2025-11-26 02:28:51,234 | INFO     | current chi2=3.4614141159265417 (change=41.58599033105715 %)
[2025-11-25 21:29:28] 2025-11-26 02:28:51,240 | INFO     | sum of square deviations: 2506794567275.508
[2025-11-25 21:29:28] 2025-11-26 02:28:51,396 | INFO     | sum of deviations: 7760356403295.287
[2025-11-25 21:29:28] 2025-11-26 02:28:51,396 | INFO     | mean x: 1764061946.6143498
[2025-11-25 21:29:28] 2025-11-26 02:28:51,396 | INFO     | mean y: 2956727.6218236173
[2025-11-25 21:29:28] 2025-11-26 02:28:51,400 | INFO     | intersect: -5458100832.470477
[2025-11-25 21:29:28] 2025-11-26 02:28:51,403 | INFO     | chi2: 2.5356223437737695
[2025-11-25 21:29:28] 2025-11-26 02:28:51,403 | INFO     | current chi2=2.5356223437737695 (change=26.746056413563764 %)
[2025-11-25 21:29:28] 2025-11-26 02:28:51,410 | INFO     | sum of square deviations: 2488106241295.8813
[2025-11-25 21:29:28] 2025-11-26 02:28:51,632 | INFO     | sum of deviations: 7916947369415.179
[2025-11-25 21:29:28] 2025-11-26 02:28:51,633 | INFO     | mean x: 1764061794.1163836
[2025-11-25 21:29:28] 2025-11-26 02:28:51,633 | INFO     | mean y: 2958004.7847152846
[2025-11-25 21:29:28] 2025-11-26 02:28:51,633 | INFO     | intersect: -5610140081.067765
[2025-11-25 21:29:28] 2025-11-26 02:28:51,639 | INFO     | chi2: 2.267712184740638
[2025-11-25 21:29:28] 2025-11-26 02:28:51,640 | INFO     | current chi2=2.267712184740638 (change=10.565854165585268 %)
[2025-11-25 21:29:28] 2025-11-26 02:28:51,640 | INFO     | right removable region: 2001
[2025-11-25 21:29:28] 2025-11-26 02:28:51,646 | INFO     | sum of square deviations: 2544446711443.3145
[2025-11-25 21:29:28] 2025-11-26 02:28:51,807 | INFO     | sum of deviations: 5638967295672.317
[2025-11-25 21:29:28] 2025-11-26 02:28:51,807 | INFO     | mean x: 1764062556.601884
[2025-11-25 21:29:28] 2025-11-26 02:28:51,807 | INFO     | mean y: 2947432.334159643
[2025-11-25 21:29:28] 2025-11-26 02:28:51,807 | INFO     | intersect: -3906543389.1715875
[2025-11-25 21:29:28] 2025-11-26 02:28:51,809 | INFO     | chi2: 7.221075529914204
[2025-11-25 21:29:28] 2025-11-26 02:28:51,810 | INFO     | current chi2=7.221075529914204 (change=19.78358924639138 %)
[2025-11-25 21:29:28] 2025-11-26 02:28:51,810 | INFO     | left removable region: 10
[2025-11-25 21:29:28] 2025-11-26 02:28:51,816 | INFO     | sum of square deviations: 2447316130237.724
[2025-11-25 21:29:28] 2025-11-26 02:28:51,864 | INFO     | monitor loop #7145: job 0:6895345500 is in state 'finished'
[2025-11-25 21:29:28] 2025-11-26 02:28:51,865 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 21:29:28] 2025-11-26 02:28:51,971 | INFO     | sum of deviations: 7286527010087.284
[2025-11-25 21:29:28] 2025-11-26 02:28:51,971 | INFO     | mean x: 1764062068.6268208
[2025-11-25 21:29:28] 2025-11-26 02:28:51,971 | INFO     | mean y: 2963418.8483174285
[2025-11-25 21:29:28] 2025-11-26 02:28:51,971 | INFO     | intersect: -5249274226.997295
[2025-11-25 21:29:28] 2025-11-26 02:28:51,973 | INFO     | chi2: 0.3772548367492909
[2025-11-25 21:29:28] 2025-11-26 02:28:51,974 | INFO     | current memory leak: 2.98 B/s (using 1991 data points, chi2=0.38)
[2025-11-25 21:29:28] 2025-11-26 02:28:51,980 | INFO     | could have reported an average CPU frequency of 2856 MHz (70 samples)
[2025-11-25 21:29:28] 2025-11-26 02:28:51,980 | INFO     | ..............................
[2025-11-25 21:29:28] 2025-11-26 02:28:51,980 | INFO     | . Timing measurements:
[2025-11-25 21:29:28] 2025-11-26 02:28:51,980 | INFO     | . get job = 0 s
[2025-11-25 21:29:28] 2025-11-26 02:28:51,980 | INFO     | . initial setup = 2 s
[2025-11-25 21:29:28] 2025-11-26 02:28:51,980 | INFO     | . payload setup = 5 s
[2025-11-25 21:29:28] 2025-11-26 02:28:51,980 | INFO     | . stage-in = 0 s
[2025-11-25 21:29:28] 2025-11-26 02:28:51,980 | INFO     | . payload execution = 123332 s
[2025-11-25 21:29:28] 2025-11-26 02:28:51,981 | INFO     | . stage-out = 7 s
[2025-11-25 21:29:28] 2025-11-26 02:28:51,981 | INFO     | . log creation = 1 s
[2025-11-25 21:29:28] 2025-11-26 02:28:51,981 | INFO     | ..............................
[2025-11-25 21:29:28] 2025-11-26 02:28:52,531 | INFO     | 
[2025-11-25 21:29:28] 2025-11-26 02:28:52,531 | INFO     | job summary report
[2025-11-25 21:29:28] 2025-11-26 02:28:52,531 | INFO     | --------------------------------------------------
[2025-11-25 21:29:28] 2025-11-26 02:28:52,531 | INFO     | PanDA job id: 6895345500
[2025-11-25 21:29:28] 2025-11-26 02:28:52,531 | INFO     | task id: 47556137
[2025-11-25 21:29:28] 2025-11-26 02:28:52,532 | INFO     | errors: (none)
[2025-11-25 21:29:28] 2025-11-26 02:28:52,532 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 21:29:28] 2025-11-26 02:28:52,532 | INFO     | pilot state: finished 
[2025-11-25 21:29:28] 2025-11-26 02:28:52,532 | INFO     | transexitcode: 0
[2025-11-25 21:29:28] 2025-11-26 02:28:52,532 | INFO     | exeerrorcode: 0
[2025-11-25 21:29:28] 2025-11-26 02:28:52,532 | INFO     | exeerrordiag: 
[2025-11-25 21:29:28] 2025-11-26 02:28:52,532 | INFO     | exitcode: 0
[2025-11-25 21:29:28] 2025-11-26 02:28:52,532 | INFO     | exitmsg: OK
[2025-11-25 21:29:28] 2025-11-26 02:28:52,532 | INFO     | cpuconsumptiontime: 256679 s
[2025-11-25 21:29:28] 2025-11-26 02:28:52,532 | INFO     | nevents: 1000
[2025-11-25 21:29:28] 2025-11-26 02:28:52,532 | INFO     | neventsw: 0
[2025-11-25 21:29:28] 2025-11-26 02:28:52,532 | INFO     | pid: 227631
[2025-11-25 21:29:28] 2025-11-26 02:28:52,532 | INFO     | pgrp: 227631
[2025-11-25 21:29:28] 2025-11-26 02:28:52,532 | INFO     | corecount: 8
[2025-11-25 21:29:28] 2025-11-26 02:28:52,533 | INFO     | event service: False
[2025-11-25 21:29:28] 2025-11-26 02:28:52,533 | INFO     | sizes: {0: 2284259, 4: 2284521, 11: 2284549, 123342: 2365915, 123343: 2365914, 123350: 2374969, 123351: 2375153, 123381: 2375399}
[2025-11-25 21:29:28] 2025-11-26 02:28:52,533 | INFO     | --------------------------------------------------
[2025-11-25 21:29:28] 2025-11-26 02:28:52,533 | INFO     | 
[2025-11-25 21:29:28] 2025-11-26 02:28:52,533 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-25 21:29:28] 2025-11-26 02:28:52,564 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 21:29:28] 2025-11-26 02:28:52,565 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 21:29:28] 2025-11-26 02:28:52,565 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 21:29:28] 2025-11-26 02:28:52,565 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 21:29:28] 2025-11-26 02:28:52,565 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 21:29:28] 2025-11-26 02:28:52,565 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 21:29:28] 2025-11-26 02:28:52,565 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 21:29:28] 2025-11-26 02:28:52,565 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 21:29:28] 2025-11-26 02:28:52,565 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 21:29:28] 2025-11-26 02:28:52,565 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 21:29:28] 2025-11-26 02:28:52,565 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 21:29:28] 2025-11-26 02:28:52,566 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 21:29:28] 2025-11-26 02:28:52,566 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 21:29:28] 2025-11-26 02:28:52,566 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 21:29:28] 2025-11-26 02:28:52,566 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 21:29:28] 2025-11-26 02:28:52,566 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 21:29:28] 2025-11-26 02:28:52,566 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 21:29:28] 2025-11-26 02:28:52,566 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 21:29:28] 2025-11-26 02:28:52,566 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 21:29:28] 2025-11-26 02:28:52,566 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 21:29:28] 2025-11-26 02:28:52,566 | INFO     | job 6895345500 has completed (purged errors)
[2025-11-25 21:29:28] 2025-11-26 02:28:52,567 | INFO     | overall cleanup function is called
[2025-11-25 21:29:28] 2025-11-26 02:28:53,596 | INFO     | --- collectZombieJob: --- 10, [227631]
[2025-11-25 21:29:28] 2025-11-26 02:28:53,601 | INFO     | zombie collector waiting for pid 227631
[2025-11-25 21:29:28] 2025-11-26 02:28:53,602 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 21:29:28] 2025-11-26 02:28:53,602 | INFO     | collected zombie processes
[2025-11-25 21:29:28] 2025-11-26 02:28:53,602 | INFO     | will attempt to kill all subprocesses of pid=227631
[2025-11-25 21:29:28] 2025-11-26 02:28:53,997 | INFO     | process IDs to be killed: [227631] (in reverse order)
[2025-11-25 21:29:28] 2025-11-26 02:28:54,431 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 21:29:28] 2025-11-26 02:28:54,431 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 21:29:28] 2025-11-26 02:28:54,458 | INFO     | did not find any defunct processes belonging to 227631
[2025-11-25 21:29:28] 2025-11-26 02:28:54,474 | INFO     | did not find any defunct processes belonging to 227631
[2025-11-25 21:29:28] 2025-11-26 02:28:54,480 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 21:29:28] 2025-11-26 02:28:54,480 | INFO     | ready for new job
[2025-11-25 21:29:28] 2025-11-26 02:28:54,481 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 21:29:28] 2025-11-26 02:28:54,496 | INFO     | ***************************************
[2025-11-25 21:29:28] 2025-11-26 02:28:54,496 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 21:29:28] 2025-11-26 02:28:54,496 | INFO     | ***************************************
[2025-11-25 21:29:28] 2025-11-26 02:28:54,497 | INFO     | 
[2025-11-25 21:29:28] 2025-11-26 02:28:54,502 | INFO     | architecture information:
[2025-11-25 21:29:28] 2025-11-26 02:28:54,506 | INFO     | executing command: cat /etc/os-release
[2025-11-25 21:29:28] 2025-11-26 02:28:54,568 | INFO     | cat /etc/os-release:
[2025-11-25 21:29:28] NAME="CentOS Linux"
[2025-11-25 21:29:28] VERSION="7 (Core)"
[2025-11-25 21:29:28] ID="centos"
[2025-11-25 21:29:28] ID_LIKE="rhel fedora"
[2025-11-25 21:29:28] VERSION_ID="7"
[2025-11-25 21:29:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 21:29:28] ANSI_COLOR="0;31"
[2025-11-25 21:29:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 21:29:28] HOME_URL="https://www.centos.org/"
[2025-11-25 21:29:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 21:29:28] 
[2025-11-25 21:29:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 21:29:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 21:29:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 21:29:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 21:29:28] 
[2025-11-25 21:29:28] 2025-11-26 02:28:54,568 | INFO     | ***************************************
[2025-11-25 21:29:28] 2025-11-26 02:28:55,072 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-25 21:29:28] 2025-11-26 02:28:55,135 | INFO     | sufficient remaining disk space (70550290432 B)
[2025-11-25 21:29:28] 2025-11-26 02:28:55,135 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 21:29:28] 2025-11-26 02:28:55,136 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 21:29:28] 2025-11-26 02:28:55,136 | INFO     | update_server=False
[2025-11-25 21:29:28] 2025-11-26 02:28:55,136 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 21:29:28] 2025-11-26 02:28:55,143 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 21:29:28] 2025-11-26 02:28:55,144 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 21:29:28] 2025-11-26 02:28:55,378 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 21:29:28] 2025-11-26 02:28:55,379 | INFO     | aborting loop
[2025-11-25 21:29:28] 2025-11-26 02:28:55,563 | INFO     | all job control threads have been joined
[2025-11-25 21:29:28] 2025-11-26 02:28:55,677 | INFO     | all payload control threads have been joined
[2025-11-25 21:29:28] 2025-11-26 02:28:55,739 | INFO     | all data control threads have been joined
[2025-11-25 21:29:28] 2025-11-26 02:28:56,141 | INFO     | [job] retrieve thread has finished
[2025-11-25 21:29:28] 2025-11-26 02:28:56,234 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 21:29:28] 2025-11-26 02:28:56,351 | INFO     | [job] validate thread has finished
[2025-11-25 21:29:28] 2025-11-26 02:28:56,392 | INFO     | [job] job monitor thread has finished
[2025-11-25 21:29:28] 2025-11-26 02:28:56,428 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 21:29:28] 2025-11-26 02:28:56,569 | INFO     | [job] control thread has finished
[2025-11-25 21:29:28] 2025-11-26 02:28:56,684 | INFO     | [payload] control thread has finished
[2025-11-25 21:29:28] 2025-11-26 02:28:56,717 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 21:29:28] 2025-11-26 02:28:56,738 | INFO     | [data] copytool_in thread has finished
[2025-11-25 21:29:28] 2025-11-26 02:28:56,746 | INFO     | [data] control thread has finished
[2025-11-25 21:29:28] 2025-11-26 02:28:56,762 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 21:29:28] 2025-11-26 02:28:56,796 | INFO     | [payload] failed_post thread has finished
[2025-11-25 21:29:28] 2025-11-26 02:28:57,019 | INFO     | [payload] validate_post thread has finished
[2025-11-25 21:29:28] 2025-11-26 02:28:57,152 | INFO     | [data] copytool_out thread has finished
[2025-11-25 21:29:28] 2025-11-26 02:28:57,552 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 21:29:28] 2025-11-26 02:28:58,565 | INFO     | [job] queue monitor thread has finished
[2025-11-25 21:29:28] 2025-11-26 02:28:59,153 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 21:29:28] 2025-11-26 02:29:04,746 | INFO     | [monitor] cgroup control has ended
[2025-11-25 21:29:28] 2025-11-26 02:29:04,754 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139893081261888)>', '<ExcThread(monitor, started 139892310927104)>']
[2025-11-25 21:29:28] 2025-11-26 02:29:09,780 | INFO     | all workflow threads have been joined
[2025-11-25 21:29:28] 2025-11-26 02:29:09,781 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 21:29:28] 2025-11-26 02:29:09,781 | INFO     | traces error code: 0
[2025-11-25 21:29:28] 2025-11-26 02:29:09,781 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 21:29:28] 2025-11-26 02:29:25,915 | INFO     | PID=208033 has CPU usage=4.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-25 21:29:28] 2025-11-26 02:29:25,916 | INFO     | .. there are 32 such processes running
[2025-11-25 21:29:28] 2025-11-26 02:29:25,916 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 21:29:28] 2025-11-26 02:29:25,916 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 21:29:28] 2025-11-26 02:29:25,916 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 21:29:28] 2025-11-26 02:29:25,916 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 21:29:28] 2025-11-26 02:29:25,916 | CRITICAL | thread 'MainThread' is not alive
[2025-11-25 21:29:28] 2025-11-26 02:29:25,916 | INFO     | [monitor] control thread has ended
[2025-11-25 21:29:28] 2025-11-26 02:29:26,192 [wrapper] ==== pilot stdout END ====
[2025-11-25 21:29:28] 2025-11-26 02:29:26,222 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 21:29:28] 2025-11-26 02:29:26,277 [wrapper] pilotpid: 208033
[2025-11-25 21:29:28] 2025-11-26 02:29:26,329 [wrapper] Pilot exit status: 0
[2025-11-25 21:29:28] 2025-11-26 02:29:26,430 [wrapper] pandaids: 6895345500 6895345500
[2025-11-25 21:29:28] 2025-11-26 02:29:27,130 [wrapper] cleanup supervisor_pilot 1863749 208034
[2025-11-25 21:29:28] 2025-11-26 02:29:27,201 [wrapper] Test setup, not cleaning
[2025-11-25 21:29:28] 2025-11-26 02:29:27,227 [wrapper] apfmon messages muted
[2025-11-25 21:29:28] 2025-11-26 02:29:27,236 [wrapper] ==== wrapper stdout END ====
[2025-11-25 21:29:28] 2025-11-26 02:29:27,265 [wrapper] ==== wrapper stderr END ====
[2025-11-25 21:29:28]  *** Error codes and diagnostics ***
[2025-11-25 21:29:28]     "exeErrorCode": 0,
[2025-11-25 21:29:28]     "exeErrorDiag": "",
[2025-11-25 21:29:28]     "pilotErrorCode": 0,
[2025-11-25 21:29:28]     "pilotErrorDiag": "",
[2025-11-25 21:29:28]  *** Listing of results directory ***
[2025-11-25 21:29:28] total 1728080
[2025-11-25 21:29:28] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-25 21:29:28] -rw-r--r--. 1 boincer umatlas    576529 Nov 22 12:17 pilot3.tar.gz
[2025-11-25 21:29:28] -rwx------. 1 boincer umatlas     36292 Nov 22 12:23 runpilot2-wrapper.sh
[2025-11-25 21:29:28] -rw-r--r--. 1 boincer umatlas      5112 Nov 22 12:23 queuedata.json
[2025-11-25 21:29:28] -rw-r--r--. 1 boincer umatlas       100 Nov 24 00:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 21:29:28] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 00:03 run_atlas
[2025-11-25 21:29:28] -rw-r--r--. 1 boincer umatlas       105 Nov 24 00:03 job.xml
[2025-11-25 21:29:28] -rw-r--r--. 3 boincer umatlas 410247692 Nov 24 00:03 EVNT.47483658._000448.pool.root.1
[2025-11-25 21:29:28] -rw-r--r--. 3 boincer umatlas 410247692 Nov 24 00:03 ATLAS.root_0
[2025-11-25 21:29:28] -rw-r--r--. 2 boincer umatlas    590102 Nov 24 00:03 input.tar.gz
[2025-11-25 21:29:28] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 00:03 start_atlas.sh
[2025-11-25 21:29:28] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 00:03 shared
[2025-11-25 21:29:28] -rw-r--r--. 1 boincer umatlas         0 Nov 24 00:03 boinc_lockfile
[2025-11-25 21:29:28] -rw-r--r--. 1 boincer umatlas      2785 Nov 24 11:12 pandaJob.out
[2025-11-25 21:29:28] -rw-------. 1 boincer umatlas        57 Nov 24 11:12 setup.sh.local
[2025-11-25 21:29:28] -rw-------. 1 boincer umatlas    987541 Nov 24 11:12 agis_schedconf.cvmfs.json
[2025-11-25 21:29:28] -rw-r--r--. 1 boincer umatlas       534 Nov 25 21:06 boinc_task_state.xml
[2025-11-25 21:29:28] -rw-r--r--. 1 boincer umatlas      6844 Nov 25 21:27 init_data.xml
[2025-11-25 21:29:28] -rw-------. 1 boincer umatlas 909086640 Nov 25 21:27 HITS.47556137._004433.pool.root.1
[2025-11-25 21:29:28] -rw-------. 1 boincer umatlas      1070 Nov 25 21:28 memory_monitor_summary.json
[2025-11-25 21:29:28] -rw-------. 1 boincer umatlas   1516240 Nov 25 21:28 agis_ddmendpoints.agis.ALL.json
[2025-11-25 21:29:28] -rw-------. 1 boincer umatlas   2836324 Nov 25 21:28 log.47556137._004433.job.log.tgz.1
[2025-11-25 21:29:28] -rw-------. 1 boincer umatlas        96 Nov 25 21:28 pilot_heartbeat.json
[2025-11-25 21:29:28] -rw-------. 1 boincer umatlas      8641 Nov 25 21:28 heartbeat.json
[2025-11-25 21:29:28] -rw-------. 1 boincer umatlas       892 Nov 25 21:29 pilotlog.txt
[2025-11-25 21:29:28] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 21:29 boinc_mmap_file
[2025-11-25 21:29:28] -rw-r--r--. 1 boincer umatlas        30 Nov 25 21:29 wrapper_checkpoint.txt
[2025-11-25 21:29:28] -rw-------. 1 boincer umatlas  15188949 Nov 25 21:29 log.47556137._004433.job.log.1
[2025-11-25 21:29:28] -rw-------. 1 boincer umatlas       353 Nov 25 21:29 output.list
[2025-11-25 21:29:28] -rw-r--r--. 1 boincer umatlas       620 Nov 25 21:29 runtime_log
[2025-11-25 21:29:28] -rw-------. 1 boincer umatlas  18042880 Nov 25 21:29 result.tar.gz
[2025-11-25 21:29:28] -rw-------. 1 boincer umatlas       793 Nov 25 21:29 y11NDmqV6g8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm9IKKDm0h4gsn.diag
[2025-11-25 21:29:28] -rw-r--r--. 1 boincer umatlas      9434 Nov 25 21:29 runtime_log.err
[2025-11-25 21:29:28] -rw-r--r--. 1 boincer umatlas     23496 Nov 25 21:29 stderr.txt
[2025-11-25 21:29:28] HITS file was successfully produced:
[2025-11-25 21:29:28] -rw-------. 1 boincer umatlas 909086640 Nov 25 21:27 shared/HITS.pool.root.1
[2025-11-25 21:29:28]  *** Contents of shared directory: ***
[2025-11-25 21:29:28] total 1306640
[2025-11-25 21:29:28] -rw-r--r--. 3 boincer umatlas 410247692 Nov 24 00:03 ATLAS.root_0
[2025-11-25 21:29:28] -rw-r--r--. 2 boincer umatlas    590102 Nov 24 00:03 input.tar.gz
[2025-11-25 21:29:28] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 00:03 start_atlas.sh
[2025-11-25 21:29:28] -rw-------. 1 boincer umatlas 909086640 Nov 25 21:27 HITS.pool.root.1
[2025-11-25 21:29:28] -rw-------. 1 boincer umatlas  18042880 Nov 25 21:29 result.tar.gz
21:29:30 (196171): run_atlas exited; CPU time 259830.899961
21:29:30 (196171): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN