Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
20:00:20 (580631): wrapper (7.7.26015): starting
20:00:20 (580631): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 20:00:20] Arguments: --nthreads 8
[2025-11-23 20:00:20] Threads: 8
[2025-11-23 20:00:20] Checking for CVMFS
[2025-11-23 20:00:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 20:00:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 20:00:21] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 20:00:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 20:00:21] 2.13.2.0 6926 27760 230292 153227 2 431 31472976 40960001 25294 16776704 0 142405607 99.680 112526940 38613 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-23 20:00:21] CVMFS is ok
[2025-11-23 20:00:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 20:00:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 20:00:21] Further information can be found at the LHC@home message board.
[2025-11-23 20:00:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 20:00:21] Checking for apptainer binary...
[2025-11-23 20:00:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 20:00:21] Running /usr/bin/apptainer --version
[2025-11-23 20:00:21] apptainer version 1.4.4-1.el9
[2025-11-23 20:00:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 20:00:21] c-212-11.aglt2.org
[2025-11-23 20:00:21] apptainer works
[2025-11-23 20:00:21] Set ATHENA_PROC_NUMBER=8
[2025-11-23 20:00:21] Set ATHENA_CORE_NUMBER=8
[2025-11-23 20:00:21] Starting ATLAS job with PandaID=6895334456
[2025-11-23 20:00:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 08:51:54]  *** The last 200 lines of the pilot log: ***
[2025-11-25 08:51:54] 2025-11-25 13:51:15,061 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3865422 B
[2025-11-25 08:51:54] 2025-11-25 13:51:15,061 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 14521 B
[2025-11-25 08:51:54] 2025-11-25 13:51:15,061 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-25 08:51:54] 2025-11-25 13:51:15,961 | INFO     | time since job start (132637s) is within the limit (172800.0s)
[2025-11-25 08:51:54] 2025-11-25 13:51:17,968 | INFO     | time since job start (132639s) is within the limit (172800.0s)
[2025-11-25 08:51:54] 2025-11-25 13:51:19,974 | INFO     | time since job start (132641s) is within the limit (172800.0s)
[2025-11-25 08:51:54] 2025-11-25 13:51:20,241 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 08:51:54] 2025-11-25 13:51:20,247 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3002.250187500001
[2025-11-25 08:51:54] 2025-11-25 13:51:20,267 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6895334456/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 08:51:54] 2025-11-25 13:51:20,268 | INFO     | extracted standard info from prmon json
[2025-11-25 08:51:54] 2025-11-25 13:51:20,268 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 08:51:54] 2025-11-25 13:51:20,269 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 08:51:54] 2025-11-25 13:51:20,298 | INFO     | fitting pss+swap vs Time
[2025-11-25 08:51:54] 2025-11-25 13:51:20,300 | INFO     | sum of square deviations: 3186129318541.691
[2025-11-25 08:51:54] 2025-11-25 13:51:20,306 | INFO     | sufficient remaining disk space (122584825856 B)
[2025-11-25 08:51:54] 2025-11-25 13:51:20,306 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-11-25 08:51:54] 2025-11-25 13:51:20,357 | INFO     | size of work directory /tmp/boinchome/slots/3/PanDA_Pilot-6895334456: 8724946 B (within 2537553920 B limit)
[2025-11-25 08:51:54] 2025-11-25 13:51:20,357 | INFO     | pfn file=/tmp/boinchome/slots/3/PanDA_Pilot-6895334456/HITS.47556137._002318.pool.root.1 does not exist (skip from workdir size calculation)
[2025-11-25 08:51:54] 2025-11-25 13:51:20,358 | INFO     | total size of present files: 0 B (workdir size: 8724946 B)
[2025-11-25 08:51:54] 2025-11-25 13:51:20,358 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/3/PanDA_Pilot-6895334456/HITS.47556137._002318.pool.root.1 since it does not exist
[2025-11-25 08:51:54] 2025-11-25 13:51:20,482 | INFO     | sum of deviations: 19190976755870.887
[2025-11-25 08:51:54] 2025-11-25 13:51:20,482 | INFO     | mean x: 1764012355.222171
[2025-11-25 08:51:54] 2025-11-25 13:51:20,482 | INFO     | mean y: 2887165.002299908
[2025-11-25 08:51:54] 2025-11-25 13:51:20,482 | INFO     | intersect: -10622268540.112804
[2025-11-25 08:51:54] 2025-11-25 13:51:20,484 | INFO     | chi2: 16.686689288845376
[2025-11-25 08:51:54] 2025-11-25 13:51:20,486 | INFO     | sum of square deviations: 3164197891079.3276
[2025-11-25 08:51:54] 2025-11-25 13:51:20,640 | INFO     | sum of deviations: 19887475906360.215
[2025-11-25 08:51:54] 2025-11-25 13:51:20,640 | INFO     | mean x: 1764012202.726141
[2025-11-25 08:51:54] 2025-11-25 13:51:20,640 | INFO     | mean y: 2892008.246196404
[2025-11-25 08:51:54] 2025-11-25 13:51:20,641 | INFO     | intersect: -11084199061.230162
[2025-11-25 08:51:54] 2025-11-25 13:51:20,642 | INFO     | chi2: 13.810046862702327
[2025-11-25 08:51:54] 2025-11-25 13:51:20,642 | INFO     | current chi2=13.810046862702327 (change=17.239144184616716 %)
[2025-11-25 08:51:54] 2025-11-25 13:51:20,642 | INFO     | right removable region: 2168
[2025-11-25 08:51:54] 2025-11-25 13:51:20,644 | INFO     | sum of square deviations: 3164195607239.334
[2025-11-25 08:51:54] 2025-11-25 13:51:20,779 | INFO     | sum of deviations: 18345046539036.78
[2025-11-25 08:51:54] 2025-11-25 13:51:20,779 | INFO     | mean x: 1764012507.726141
[2025-11-25 08:51:54] 2025-11-25 13:51:20,779 | INFO     | mean y: 2893046.112494237
[2025-11-25 08:51:54] 2025-11-25 13:51:20,779 | INFO     | intersect: -10224316509.340036
[2025-11-25 08:51:54] 2025-11-25 13:51:20,781 | INFO     | chi2: 12.798607147662393
[2025-11-25 08:51:54] 2025-11-25 13:51:20,781 | INFO     | current chi2=12.798607147662393 (change=23.30050061986871 %)
[2025-11-25 08:51:54] 2025-11-25 13:51:20,781 | INFO     | left removable region: 10
[2025-11-25 08:51:54] 2025-11-25 13:51:20,784 | INFO     | sum of square deviations: 3116298972889.885
[2025-11-25 08:51:54] 2025-11-25 13:51:20,921 | INFO     | sum of deviations: 18438960457203.14
[2025-11-25 08:51:54] 2025-11-25 13:51:20,921 | INFO     | mean x: 1764012477.2349398
[2025-11-25 08:51:54] 2025-11-25 13:51:20,921 | INFO     | mean y: 2904585.02734013
[2025-11-25 08:51:54] 2025-11-25 13:51:20,921 | INFO     | intersect: -10434655031.912966
[2025-11-25 08:51:54] 2025-11-25 13:51:20,923 | INFO     | chi2: 5.885939259192308
[2025-11-25 08:51:54] 2025-11-25 13:51:20,924 | INFO     | current memory leak: 5.92 B/s (using 2158 data points, chi2=5.89)
[2025-11-25 08:51:54] 2025-11-25 13:51:20,927 | INFO     | could have reported an average CPU frequency of 3033 MHz (76 samples)
[2025-11-25 08:51:54] 2025-11-25 13:51:20,927 | INFO     | ..............................
[2025-11-25 08:51:54] 2025-11-25 13:51:20,927 | INFO     | . Timing measurements:
[2025-11-25 08:51:54] 2025-11-25 13:51:20,928 | INFO     | . get job = 0 s
[2025-11-25 08:51:54] 2025-11-25 13:51:20,928 | INFO     | . initial setup = 2 s
[2025-11-25 08:51:54] 2025-11-25 13:51:20,928 | INFO     | . payload setup = 12 s
[2025-11-25 08:51:54] 2025-11-25 13:51:20,928 | INFO     | . stage-in = 0 s
[2025-11-25 08:51:54] 2025-11-25 13:51:20,928 | INFO     | . payload execution = 132597 s
[2025-11-25 08:51:54] 2025-11-25 13:51:20,928 | INFO     | . stage-out = 3 s
[2025-11-25 08:51:54] 2025-11-25 13:51:20,928 | INFO     | . log creation = 1 s
[2025-11-25 08:51:54] 2025-11-25 13:51:20,928 | INFO     | ..............................
[2025-11-25 08:51:54] 2025-11-25 13:51:21,059 | INFO     | 
[2025-11-25 08:51:54] 2025-11-25 13:51:21,059 | INFO     | job summary report
[2025-11-25 08:51:54] 2025-11-25 13:51:21,059 | INFO     | --------------------------------------------------
[2025-11-25 08:51:54] 2025-11-25 13:51:21,059 | INFO     | PanDA job id: 6895334456
[2025-11-25 08:51:54] 2025-11-25 13:51:21,059 | INFO     | task id: 47556137
[2025-11-25 08:51:54] 2025-11-25 13:51:21,059 | INFO     | errors: (none)
[2025-11-25 08:51:54] 2025-11-25 13:51:21,059 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 08:51:54] 2025-11-25 13:51:21,060 | INFO     | pilot state: finished 
[2025-11-25 08:51:54] 2025-11-25 13:51:21,060 | INFO     | transexitcode: 0
[2025-11-25 08:51:54] 2025-11-25 13:51:21,060 | INFO     | exeerrorcode: 0
[2025-11-25 08:51:54] 2025-11-25 13:51:21,060 | INFO     | exeerrordiag: 
[2025-11-25 08:51:54] 2025-11-25 13:51:21,060 | INFO     | exitcode: 0
[2025-11-25 08:51:54] 2025-11-25 13:51:21,060 | INFO     | exitmsg: OK
[2025-11-25 08:51:54] 2025-11-25 13:51:21,060 | INFO     | cpuconsumptiontime: 214347 s
[2025-11-25 08:51:54] 2025-11-25 13:51:21,060 | INFO     | nevents: 1000
[2025-11-25 08:51:54] 2025-11-25 13:51:21,060 | INFO     | neventsw: 0
[2025-11-25 08:51:54] 2025-11-25 13:51:21,060 | INFO     | pid: 591775
[2025-11-25 08:51:54] 2025-11-25 13:51:21,060 | INFO     | pgrp: 591775
[2025-11-25 08:51:54] 2025-11-25 13:51:21,061 | INFO     | corecount: 8
[2025-11-25 08:51:54] 2025-11-25 13:51:21,061 | INFO     | event service: False
[2025-11-25 08:51:54] 2025-11-25 13:51:21,061 | INFO     | sizes: {0: 2298756, 7: 2299018, 11: 2299046, 132610: 2385733, 132615: 2395523, 132616: 2395579, 132624: 2395981}
[2025-11-25 08:51:54] 2025-11-25 13:51:21,061 | INFO     | --------------------------------------------------
[2025-11-25 08:51:54] 2025-11-25 13:51:21,061 | INFO     | 
[2025-11-25 08:51:54] 2025-11-25 13:51:21,061 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-25 08:51:54] 2025-11-25 13:51:21,088 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 08:51:54] 2025-11-25 13:51:21,089 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 08:51:54] 2025-11-25 13:51:21,089 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 08:51:54] 2025-11-25 13:51:21,089 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 08:51:54] 2025-11-25 13:51:21,089 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 08:51:54] 2025-11-25 13:51:21,089 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 08:51:54] 2025-11-25 13:51:21,089 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 08:51:54] 2025-11-25 13:51:21,090 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 08:51:54] 2025-11-25 13:51:21,090 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 08:51:54] 2025-11-25 13:51:21,090 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 08:51:54] 2025-11-25 13:51:21,090 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 08:51:54] 2025-11-25 13:51:21,090 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 08:51:54] 2025-11-25 13:51:21,091 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 08:51:54] 2025-11-25 13:51:21,091 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 08:51:54] 2025-11-25 13:51:21,091 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 08:51:54] 2025-11-25 13:51:21,091 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 08:51:54] 2025-11-25 13:51:21,091 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 08:51:54] 2025-11-25 13:51:21,091 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 08:51:54] 2025-11-25 13:51:21,091 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 08:51:54] 2025-11-25 13:51:21,092 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 08:51:54] 2025-11-25 13:51:21,092 | INFO     | job 6895334456 has completed (purged errors)
[2025-11-25 08:51:54] 2025-11-25 13:51:21,092 | INFO     | overall cleanup function is called
[2025-11-25 08:51:54] 2025-11-25 13:51:21,329 | INFO     | number of running child processes to parent process 591775: 1
[2025-11-25 08:51:54] 2025-11-25 13:51:21,337 | INFO     | maximum number of monitored processes: 16
[2025-11-25 08:51:54] 2025-11-25 13:51:21,337 | INFO     | aborting job monitoring since job object (job id=6895334456) has expired
[2025-11-25 08:51:54] 2025-11-25 13:51:22,118 | INFO     | --- collectZombieJob: --- 10, [591775]
[2025-11-25 08:51:54] 2025-11-25 13:51:22,118 | INFO     | zombie collector waiting for pid 591775
[2025-11-25 08:51:54] 2025-11-25 13:51:22,119 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 08:51:54] 2025-11-25 13:51:22,119 | INFO     | collected zombie processes
[2025-11-25 08:51:54] 2025-11-25 13:51:22,119 | INFO     | will attempt to kill all subprocesses of pid=591775
[2025-11-25 08:51:54] 2025-11-25 13:51:22,561 | INFO     | process IDs to be killed: [591775] (in reverse order)
[2025-11-25 08:51:54] 2025-11-25 13:51:22,714 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 08:51:54] 2025-11-25 13:51:22,715 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 08:51:54] 2025-11-25 13:51:22,732 | INFO     | did not find any defunct processes belonging to 591775
[2025-11-25 08:51:54] 2025-11-25 13:51:22,749 | INFO     | did not find any defunct processes belonging to 591775
[2025-11-25 08:51:54] 2025-11-25 13:51:22,751 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 08:51:54] 2025-11-25 13:51:22,751 | INFO     | ready for new job
[2025-11-25 08:51:54] 2025-11-25 13:51:22,751 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 08:51:54] 2025-11-25 13:51:22,757 | INFO     | ***************************************
[2025-11-25 08:51:54] 2025-11-25 13:51:22,758 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 08:51:54] 2025-11-25 13:51:22,758 | INFO     | ***************************************
[2025-11-25 08:51:54] 2025-11-25 13:51:22,758 | INFO     | 
[2025-11-25 08:51:54] 2025-11-25 13:51:22,763 | INFO     | architecture information:
[2025-11-25 08:51:54] 2025-11-25 13:51:22,764 | INFO     | executing command: cat /etc/os-release
[2025-11-25 08:51:54] 2025-11-25 13:51:22,781 | INFO     | cat /etc/os-release:
[2025-11-25 08:51:54] NAME="CentOS Linux"
[2025-11-25 08:51:54] VERSION="7 (Core)"
[2025-11-25 08:51:54] ID="centos"
[2025-11-25 08:51:54] ID_LIKE="rhel fedora"
[2025-11-25 08:51:54] VERSION_ID="7"
[2025-11-25 08:51:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 08:51:54] ANSI_COLOR="0;31"
[2025-11-25 08:51:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 08:51:54] HOME_URL="https://www.centos.org/"
[2025-11-25 08:51:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 08:51:54] 
[2025-11-25 08:51:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 08:51:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 08:51:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 08:51:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 08:51:54] 
[2025-11-25 08:51:54] 2025-11-25 13:51:22,782 | INFO     | ***************************************
[2025-11-25 08:51:54] 2025-11-25 13:51:23,285 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-25 08:51:54] 2025-11-25 13:51:23,405 | INFO     | sufficient remaining disk space (122611040256 B)
[2025-11-25 08:51:54] 2025-11-25 13:51:23,406 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 08:51:54] 2025-11-25 13:51:23,407 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 08:51:54] 2025-11-25 13:51:23,407 | INFO     | update_server=False
[2025-11-25 08:51:54] 2025-11-25 13:51:23,407 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 08:51:54] 2025-11-25 13:51:23,407 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 08:51:54] 2025-11-25 13:51:23,503 | INFO     | all data control threads have been joined
[2025-11-25 08:51:54] 2025-11-25 13:51:23,842 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 08:51:54] 2025-11-25 13:51:23,842 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-25 08:51:54] 2025-11-25 13:51:23,842 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-25 08:51:54] 2025-11-25 13:51:23,843 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 08:51:54] 2025-11-25 13:51:23,843 | INFO     | will abort loop
[2025-11-25 08:51:54] 2025-11-25 13:51:24,413 | INFO     | [job] retrieve thread has finished
[2025-11-25 08:51:54] 2025-11-25 13:51:24,492 | INFO     | all payload control threads have been joined
[2025-11-25 08:51:54] 2025-11-25 13:51:24,509 | INFO     | [data] control thread has finished
[2025-11-25 08:51:54] 2025-11-25 13:51:24,547 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 08:51:54] 2025-11-25 13:51:24,632 | INFO     | all job control threads have been joined
[2025-11-25 08:51:54] 2025-11-25 13:51:24,828 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 08:51:54] 2025-11-25 13:51:24,848 | INFO     | [data] copytool_in thread has finished
[2025-11-25 08:51:54] 2025-11-25 13:51:24,849 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 08:51:54] 2025-11-25 13:51:24,854 | INFO     | [job] job monitor thread has finished
[2025-11-25 08:51:54] 2025-11-25 13:51:25,414 | INFO     | [data] copytool_out thread has finished
[2025-11-25 08:51:54] 2025-11-25 13:51:25,498 | INFO     | [payload] control thread has finished
[2025-11-25 08:51:54] 2025-11-25 13:51:25,643 | INFO     | [job] control thread has finished
[2025-11-25 08:51:54] 2025-11-25 13:51:25,736 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 08:51:54] 2025-11-25 13:51:25,770 | INFO     | [payload] failed_post thread has finished
[2025-11-25 08:51:54] 2025-11-25 13:51:25,774 | INFO     | [payload] validate_post thread has finished
[2025-11-25 08:51:54] 2025-11-25 13:51:25,850 | INFO     | [job] validate thread has finished
[2025-11-25 08:51:54] 2025-11-25 13:51:26,080 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 08:51:54] 2025-11-25 13:51:27,086 | INFO     | [job] queue monitor thread has finished
[2025-11-25 08:51:54] 2025-11-25 13:51:27,856 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 08:51:54] 2025-11-25 13:51:34,638 | INFO     | [monitor] cgroup control has ended
[2025-11-25 08:51:54] 2025-11-25 13:51:36,245 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140278098396992)>', '<ExcThread(monitor, started 140277373196032)>']
[2025-11-25 08:51:54] 2025-11-25 13:51:41,270 | INFO     | all workflow threads have been joined
[2025-11-25 08:51:54] 2025-11-25 13:51:41,271 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 08:51:54] 2025-11-25 13:51:41,275 | INFO     | traces error code: 0
[2025-11-25 08:51:54] 2025-11-25 13:51:41,275 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 08:51:54] 2025-11-25 13:51:53,575 | INFO     | PID=584296 has CPU usage=7.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-25 08:51:54] 2025-11-25 13:51:53,575 | INFO     | .. there are 25 such processes running
[2025-11-25 08:51:54] 2025-11-25 13:51:53,576 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 08:51:54] 2025-11-25 13:51:53,576 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 08:51:54] 2025-11-25 13:51:53,576 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 08:51:54] 2025-11-25 13:51:53,576 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 08:51:54] 2025-11-25 13:51:53,577 | INFO     | [monitor] control thread has ended
[2025-11-25 08:51:54] 2025-11-25 13:51:53,905 [wrapper] ==== pilot stdout END ====
[2025-11-25 08:51:54] 2025-11-25 13:51:53,910 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 08:51:54] 2025-11-25 13:51:53,912 [wrapper] pilotpid: 584296
[2025-11-25 08:51:54] 2025-11-25 13:51:53,920 [wrapper] Pilot exit status: 0
[2025-11-25 08:51:54] 2025-11-25 13:51:53,937 [wrapper] pandaids: 6895334456
[2025-11-25 08:51:54] 2025-11-25 13:51:54,027 [wrapper] cleanup supervisor_pilot 2709766 584297
[2025-11-25 08:51:54] 2025-11-25 13:51:54,030 [wrapper] Test setup, not cleaning
[2025-11-25 08:51:54] 2025-11-25 13:51:54,034 [wrapper] apfmon messages muted
[2025-11-25 08:51:54] 2025-11-25 13:51:54,037 [wrapper] ==== wrapper stdout END ====
[2025-11-25 08:51:54] 2025-11-25 13:51:54,039 [wrapper] ==== wrapper stderr END ====
[2025-11-25 08:51:54]  *** Error codes and diagnostics ***
[2025-11-25 08:51:54]     "exeErrorCode": 0,
[2025-11-25 08:51:54]     "exeErrorDiag": "",
[2025-11-25 08:51:54]     "pilotErrorCode": 0,
[2025-11-25 08:51:54]     "pilotErrorDiag": "",
[2025-11-25 08:51:54]  *** Listing of results directory ***
[2025-11-25 08:51:54] total 1344628
[2025-11-25 08:51:54] -rw-r--r--. 1 boincer umatlas    576529 Nov 21 22:44 pilot3.tar.gz
[2025-11-25 08:51:54] -rwx------. 1 boincer umatlas     36292 Nov 21 22:47 runpilot2-wrapper.sh
[2025-11-25 08:51:54] -rw-r--r--. 1 boincer umatlas      5112 Nov 21 22:47 queuedata.json
[2025-11-25 08:51:54] -rw-r--r--. 1 boincer umatlas       100 Nov 23 20:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 08:51:54] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 23 20:00 run_atlas
[2025-11-25 08:51:54] -rw-r--r--. 1 boincer umatlas       105 Nov 23 20:00 job.xml
[2025-11-25 08:51:54] -rw-r--r--. 2 boincer umatlas 411156688 Nov 23 20:00 EVNT.47483658._000235.pool.root.1
[2025-11-25 08:51:54] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 20:00 start_atlas.sh
[2025-11-25 08:51:54] drwxrwx--x. 2 boincer umatlas      4096 Nov 23 20:00 shared
[2025-11-25 08:51:54] -rw-r--r--. 2 boincer umatlas    590097 Nov 23 20:00 input.tar.gz
[2025-11-25 08:51:54] -rw-r--r--. 1 boincer umatlas         0 Nov 23 20:00 boinc_lockfile
[2025-11-25 08:51:54] -rw-r--r--. 1 boincer umatlas      2785 Nov 23 20:00 pandaJob.out
[2025-11-25 08:51:54] -rw-------. 1 boincer umatlas        57 Nov 23 20:00 setup.sh.local
[2025-11-25 08:51:54] -rw-------. 1 boincer umatlas    989786 Nov 23 20:00 agis_schedconf.cvmfs.json
[2025-11-25 08:51:54] drwx------. 5 boincer umatlas      4096 Nov 23 20:00 pilot3
[2025-11-25 08:51:54] -rw-r--r--. 1 boincer umatlas       534 Nov 25 08:40 boinc_task_state.xml
[2025-11-25 08:51:54] -rw-r--r--. 1 boincer umatlas      6950 Nov 25 08:45 init_data.xml
[2025-11-25 08:51:54] -rw-------. 1 boincer umatlas 921699321 Nov 25 08:50 HITS.47556137._002318.pool.root.1
[2025-11-25 08:51:54] -rw-------. 1 boincer umatlas      1074 Nov 25 08:51 memory_monitor_summary.json
[2025-11-25 08:51:54] -rw-------. 1 boincer umatlas   1516240 Nov 25 08:51 agis_ddmendpoints.agis.ALL.json
[2025-11-25 08:51:54] -rw-------. 1 boincer umatlas   3052154 Nov 25 08:51 log.47556137._002318.job.log.tgz.1
[2025-11-25 08:51:54] -rw-------. 1 boincer umatlas      8633 Nov 25 08:51 heartbeat.json
[2025-11-25 08:51:54] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 08:51 boinc_mmap_file
[2025-11-25 08:51:54] -rw-r--r--. 1 boincer umatlas        30 Nov 25 08:51 wrapper_checkpoint.txt
[2025-11-25 08:51:54] -rw-------. 1 boincer umatlas       822 Nov 25 08:51 pilotlog.txt
[2025-11-25 08:51:54] -rw-------. 1 boincer umatlas        95 Nov 25 08:51 pilot_heartbeat.json
[2025-11-25 08:51:54] -rw-------. 1 boincer umatlas  17009924 Nov 25 08:51 log.47556137._002318.job.log.1
[2025-11-25 08:51:54] -rw-------. 1 boincer umatlas       353 Nov 25 08:51 output.list
[2025-11-25 08:51:54] -rw-r--r--. 1 boincer umatlas       620 Nov 25 08:51 runtime_log
[2025-11-25 08:51:54] -rw-------. 1 boincer umatlas  20080640 Nov 25 08:51 result.tar.gz
[2025-11-25 08:51:54] -rw-r--r--. 1 boincer umatlas      9344 Nov 25 08:51 runtime_log.err
[2025-11-25 08:51:54] -rw-------. 1 boincer umatlas       670 Nov 25 08:51 2PTKDmrltg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmqvHKDm5ZfYxn.diag
[2025-11-25 08:51:54] -rw-r--r--. 1 boincer umatlas     21901 Nov 25 08:51 stderr.txt
[2025-11-25 08:51:54] HITS file was successfully produced:
[2025-11-25 08:51:54] -rw-------. 1 boincer umatlas 921699321 Nov 25 08:50 shared/HITS.pool.root.1
[2025-11-25 08:51:54]  *** Contents of shared directory: ***
[2025-11-25 08:51:54] total 1321840
[2025-11-25 08:51:54] -rw-r--r--. 2 boincer umatlas 411156688 Nov 23 20:00 ATLAS.root_0
[2025-11-25 08:51:54] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 20:00 start_atlas.sh
[2025-11-25 08:51:54] -rw-r--r--. 2 boincer umatlas    590097 Nov 23 20:00 input.tar.gz
[2025-11-25 08:51:54] -rw-------. 1 boincer umatlas 921699321 Nov 25 08:50 HITS.pool.root.1
[2025-11-25 08:51:54] -rw-------. 1 boincer umatlas  20080640 Nov 25 08:51 result.tar.gz
08:51:55 (580631): run_atlas exited; CPU time 215844.097712
08:51:55 (580631): called boinc_finish(0)

</stderr_txt>
]]>

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