Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
01:48:22 (446481): wrapper (7.7.26015): starting
01:48:22 (446481): wrapper: running run_atlas (--nthreads 3)
[2025-11-24 01:48:22] Arguments: --nthreads 3
[2025-11-24 01:48:22] Threads: 3
[2025-11-24 01:48:22] Checking for CVMFS
[2025-11-24 01:48:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 01:48:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 01:48:23] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 01:48:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 01:48:23] 2.9.2.0 154488 63 58164 153227 1 88 34930718 36864001 0 130560 0 876465 100.000 1301 1243 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-24 01:48:23] CVMFS is ok
[2025-11-24 01:48:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 01:48:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 01:48:23] Further information can be found at the LHC@home message board.
[2025-11-24 01:48:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 01:48:23] Checking for apptainer binary...
[2025-11-24 01:48:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 01:48:23] Running /usr/bin/apptainer --version
[2025-11-24 01:48:23] apptainer version 1.4.1-1.1
[2025-11-24 01:48:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 01:48:23] thA335
[2025-11-24 01:48:23] apptainer works
[2025-11-24 01:48:23] Set ATHENA_PROC_NUMBER=3
[2025-11-24 01:48:23] Set ATHENA_CORE_NUMBER=3
[2025-11-24 01:48:23] Starting ATLAS job with PandaID=6894250336
[2025-11-24 01:48:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 01:52:36]  *** The last 200 lines of the pilot log: ***
[2025-11-24 01:52:36] 2025-11-24 00:51:45,053 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 01:52:36] 2025-11-24 00:51:45,053 | INFO     | update_server=False
[2025-11-24 01:52:36] 2025-11-24 00:51:45,053 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 01:52:36] 2025-11-24 00:51:45,053 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 01:52:36] 2025-11-24 00:51:45,053 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 01:52:36] 2025-11-24 00:51:45,207 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-24 01:52:36] 2025-11-24 00:51:45,207 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-24 01:52:36] 2025-11-24 00:51:45,209 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 01:52:36] 2025-11-24 00:51:45,209 | INFO     | will abort loop
[2025-11-24 01:52:36] 2025-11-24 00:51:45,389 | INFO     | all data control threads have been joined
[2025-11-24 01:52:36] 2025-11-24 00:51:45,691 | INFO     | all payload control threads have been joined
[2025-11-24 01:52:36] 2025-11-24 00:51:46,059 | INFO     | [job] retrieve thread has finished
[2025-11-24 01:52:36] 2025-11-24 00:51:46,060 | INFO     | [job] queue monitor thread has finished
[2025-11-24 01:52:36] 2025-11-24 00:51:46,214 | INFO     | [job] job monitor thread has finished
[2025-11-24 01:52:36] 2025-11-24 00:51:46,277 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 01:52:36] 2025-11-24 00:51:46,287 | INFO     | all job control threads have been joined
[2025-11-24 01:52:36] 2025-11-24 00:51:46,309 | INFO     | [payload] validate_post thread has finished
[2025-11-24 01:52:36] 2025-11-24 00:51:46,395 | INFO     | [data] control thread has finished
[2025-11-24 01:52:36] 2025-11-24 00:51:46,528 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 01:52:36] 2025-11-24 00:51:46,614 | INFO     | [data] copytool_in thread has finished
[2025-11-24 01:52:36] 2025-11-24 00:51:46,680 | INFO     | [job] validate thread has finished
[2025-11-24 01:52:36] 2025-11-24 00:51:46,697 | INFO     | [payload] control thread has finished
[2025-11-24 01:52:36] 2025-11-24 00:51:46,763 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 01:52:36] 2025-11-24 00:51:46,808 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 01:52:36] 2025-11-24 00:51:46,840 | INFO     | [payload] failed_post thread has finished
[2025-11-24 01:52:36] 2025-11-24 00:51:47,059 | INFO     | [data] copytool_out thread has finished
[2025-11-24 01:52:36] 2025-11-24 00:51:47,293 | INFO     | [job] control thread has finished
[2025-11-24 01:52:36] 2025-11-24 00:51:47,369 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 01:52:36] 2025-11-24 00:51:51,375 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 01:52:36] 2025-11-24 00:52:14,838 | INFO     | PID=450206 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-24 01:52:36] 2025-11-24 00:52:14,838 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 01:52:36] 2025-11-24 00:52:14,838 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 01:52:36] 2025-11-24 00:52:14,838 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 01:52:36] 2025-11-24 00:52:29,967 | INFO     | [monitor] cgroup control has ended
[2025-11-24 01:52:36] 2025-11-24 00:52:31,238 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140267522844480)>', '<ExcThread(monitor, started 140266904213248)>']
[2025-11-24 01:52:36] 2025-11-24 00:52:31,928 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 01:52:36] 2025-11-24 00:52:31,929 | INFO     | [monitor] control thread has ended
[2025-11-24 01:52:36] 2025-11-24 00:52:36,264 | INFO     | all workflow threads have been joined
[2025-11-24 01:52:36] 2025-11-24 00:52:36,265 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 01:52:36] 2025-11-24 00:52:36,265 | INFO     | traces error code: 0
[2025-11-24 01:52:36] 2025-11-24 00:52:36,266 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 01:52:36] 2025-11-24 00:52:36,312 [wrapper] ==== pilot stdout END ====
[2025-11-24 01:52:36] 2025-11-24 00:52:36,316 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 01:52:36] 2025-11-24 00:52:36,319 [wrapper] pilotpid: 450206
[2025-11-24 01:52:36] 2025-11-24 00:52:36,322 [wrapper] Pilot exit status: 0
[2025-11-24 01:52:36] 2025-11-24 00:52:36,328 [wrapper] pandaids: 6894250336
[2025-11-24 01:52:36] 2025-11-24 00:52:36,345 [wrapper] cleanup supervisor_pilot  450212 450207
[2025-11-24 01:52:36] 2025-11-24 00:52:36,348 [wrapper] Test setup, not cleaning
[2025-11-24 01:52:36] 2025-11-24 00:52:36,350 [wrapper] apfmon messages muted
[2025-11-24 01:52:36] 2025-11-24 00:52:36,353 [wrapper] ==== wrapper stdout END ====
[2025-11-24 01:52:36] 2025-11-24 00:52:36,356 [wrapper] ==== wrapper stderr END ====
[2025-11-24 01:52:36]  *** Error codes and diagnostics ***
[2025-11-24 01:52:36]     "exeErrorCode": 65,
[2025-11-24 01:52:36]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-24 01:52:36]     "pilotErrorCode": 1305,
[2025-11-24 01:52:36]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-24 01:52:36]  *** Listing of results directory ***
[2025-11-24 01:52:36] total 405320
[2025-11-24 01:52:36] -rw-r--r-- 1 boinc boinc    576529 Nov 21 02:08 pilot3.tar.gz
[2025-11-24 01:52:36] -rw-r--r-- 1 boinc boinc      5112 Nov 21 02:52 queuedata.json
[2025-11-24 01:52:36] -rwx------ 1 boinc boinc     36292 Nov 21 02:54 runpilot2-wrapper.sh
[2025-11-24 01:52:36] -rw-r--r-- 1 boinc boinc       100 Nov 24 01:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 01:52:36] -rwxr-xr-x 1 boinc boinc      7986 Nov 24 01:48 run_atlas
[2025-11-24 01:52:36] -rw-r--r-- 1 boinc boinc       105 Nov 24 01:48 job.xml
[2025-11-24 01:52:36] -rw-r--r-- 2 boinc boinc 410854098 Nov 24 01:48 EVNT.47493127._002105.pool.root.1
[2025-11-24 01:52:36] -rw-r--r-- 2 boinc boinc    590104 Nov 24 01:48 input.tar.gz
[2025-11-24 01:52:36] -rw-r--r-- 2 boinc boinc     15847 Nov 24 01:48 start_atlas.sh
[2025-11-24 01:52:36] drwxrwx--x 2 boinc boinc      4096 Nov 24 01:48 shared
[2025-11-24 01:52:36] -rw-r--r-- 1 boinc boinc         0 Nov 24 01:48 boinc_setup_complete
[2025-11-24 01:52:36] -rw-r--r-- 1 boinc boinc      6195 Nov 24 01:48 init_data.xml
[2025-11-24 01:52:36] -rw-r--r-- 1 boinc boinc         0 Nov 24 01:48 boinc_lockfile
[2025-11-24 01:52:36] -rw-r--r-- 1 boinc boinc      2785 Nov 24 01:48 pandaJob.out
[2025-11-24 01:52:36] -rw------- 1 boinc boinc    989786 Nov 24 01:48 agis_schedconf.cvmfs.json
[2025-11-24 01:52:36] -rw------- 1 boinc boinc   1526164 Nov 24 01:48 agis_ddmendpoints.agis.ALL.json
[2025-11-24 01:52:36] drwx------ 5 boinc boinc      4096 Nov 24 01:48 pilot3
[2025-11-24 01:52:36] -rw-r--r-- 1 boinc boinc       522 Nov 24 01:49 boinc_task_state.xml
[2025-11-24 01:52:36] -rw------- 1 boinc boinc       948 Nov 24 01:49 memory_monitor_summary.json
[2025-11-24 01:52:36] -rw------- 1 boinc boinc     55705 Nov 24 01:49 log.47533967._000770.job.log.tgz.1
[2025-11-24 01:52:36] -rw------- 1 boinc boinc        95 Nov 24 01:51 pilot_heartbeat.json
[2025-11-24 01:52:36] -rw------- 1 boinc boinc      8402 Nov 24 01:51 heartbeat.json
[2025-11-24 01:52:36] -rw-r--r-- 1 boinc boinc        22 Nov 24 01:52 wrapper_checkpoint.txt
[2025-11-24 01:52:36] -rw-r--r-- 1 boinc boinc      8192 Nov 24 01:52 boinc_mmap_file
[2025-11-24 01:52:36] -rw------- 1 boinc boinc      4937 Nov 24 01:52 pilotlog.txt
[2025-11-24 01:52:36] -rw------- 1 boinc boinc     93585 Nov 24 01:52 log.47533967._000770.job.log.1
[2025-11-24 01:52:36] -rw------- 1 boinc boinc       186 Nov 24 01:52 output.list
[2025-11-24 01:52:36] -rw-r--r-- 1 boinc boinc       620 Nov 24 01:52 runtime_log
[2025-11-24 01:52:36] -rw------- 1 boinc boinc    163840 Nov 24 01:52 result.tar.gz
[2025-11-24 01:52:36] -rw-r--r-- 1 boinc boinc      8744 Nov 24 01:52 runtime_log.err
[2025-11-24 01:52:36] -rw------- 1 boinc boinc       649 Nov 24 01:52 gpzLDmpWVg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmgqIKDm4t9r5n.diag
[2025-11-24 01:52:36] -rw-r--r-- 1 boinc boinc      8115 Nov 24 01:52 stderr.txt
[2025-11-24 01:52:36] No HITS result produced
[2025-11-24 01:52:36]  *** Contents of shared directory: ***
[2025-11-24 01:52:36] total 401988
[2025-11-24 01:52:36] -rw-r--r-- 2 boinc boinc 410854098 Nov 24 01:48 ATLAS.root_0
[2025-11-24 01:52:36] -rw-r--r-- 2 boinc boinc    590104 Nov 24 01:48 input.tar.gz
[2025-11-24 01:52:36] -rw-r--r-- 2 boinc boinc     15847 Nov 24 01:48 start_atlas.sh
[2025-11-24 01:52:36] -rw------- 1 boinc boinc    163840 Nov 24 01:52 result.tar.gz
01:52:37 (446481): run_atlas exited; CPU time 31.129841
01:52:37 (446481): called boinc_finish(0)

</stderr_txt>
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